BQ622929

Overview
NameBQ622929
Unique NameBQ622929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:317..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER2_APHSA (Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.132e-17
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTV-DQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK+VSG   +Q +Q+FLDDDQ+  G+V+TC AYPT D TI TH+E E+
Sbjct:   45 GSCSTCAGKLVSGAAPNQDDQAFLDDDQLAAGWVMTCVAYPTGDCTIMTHQESEV 99          

HSP 2 Score: 37.7354 bits (86), Expect = 1.132e-17
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDA EEAGLDLP SCRAG+
Sbjct:   27 ILDAGEEAGLDLPSSCRAGS 46          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.411e-17
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C G++ +G VDQSE SFLDD Q+ EG++LTC +YP +D  I THKEE+L
Sbjct:  101 GSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDL 154          

HSP 2 Score: 34.6538 bits (78), Expect = 1.411e-17
Identity = 14/20 (70.00%), Postives = 19/20 (95.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            IL+AAE AG++LP+SCRAG+
Sbjct:   83 ILEAAETAGVELPFSCRAGS 102          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FERH_ANASP (Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC 7120) GN=fdxH PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.473e-17
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELA 222
            G CSSC GKVV G VDQS+Q FLDD+Q+G+GF L C  YP S+ TI+TH+E  LA
Sbjct:   45 GSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQEPYLA 99          

HSP 2 Score: 31.9574 bits (71), Expect = 1.473e-17
Identity = 12/20 (60.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G++LP+SC +G+
Sbjct:   27 ILDGAEENGIELPFSCHSGS 46          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER2_EQUAR (Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.491e-17
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK+VSGTVDQSE SFLDD+QI +G+VLTC A P SDV IETHKE+EL
Sbjct:   40 GACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93          

HSP 2 Score: 21.9422 bits (45), Expect = 2.491e-17
Identity = 10/20 (50.00%), Postives = 13/20 (65.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ++D   E   DLP SC+AGA
Sbjct:   23 LIDIGSEKA-DLPLSCQAGA 41          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER2_PLEBO (Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.205e-16
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKVV G ++Q +Q+FLD++Q+ +GFVL C  YP +D TI TH+E  L
Sbjct:   45 GACSSCVGKVVEGEINQDDQTFLDEEQVAKGFVLLCVTYPRTDCTIRTHQEAYL 98          

HSP 2 Score: 34.2686 bits (77), Expect = 1.205e-16
Identity = 14/20 (70.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            +L+AAEEA LDLP+SC +GA
Sbjct:   27 VLEAAEEAELDLPFSCHSGA 46          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FERV_ANAVT (Ferredoxin, vegetative OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH2 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.842e-16
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC  KVV G VDQSEQ FLD++Q+ +GF++ C +YP SD TI TH+E  L
Sbjct:   45 GSCSSCVAKVVEGEVDQSEQVFLDEEQMAKGFIVLCVSYPRSDCTIRTHQEPYL 98          

HSP 2 Score: 30.4166 bits (67), Expect = 9.842e-16
Identity = 11/20 (55.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAE+  ++LP+SC++G+
Sbjct:   27 ILDAAEQQDIELPFSCQSGS 46          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FERH_FREDI (Ferredoxin, heterocyst OS=Fremyella diplosiphon GN=fdxH PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.812e-15
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKVV G VDQS+Q FLDD+Q+ +GF L C  YP S+ TI+TH+E  L
Sbjct:   45 GSCSSCVGKVVEGEVDQSDQIFLDDEQMSKGFALLCVTYPRSNCTIKTHQEPYL 98          

HSP 2 Score: 28.1054 bits (61), Expect = 2.812e-15
Identity = 10/20 (50.00%), Postives = 16/20 (80.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            IL+ A E G++LP+SC +G+
Sbjct:   27 ILEGAAENGIELPFSCHSGS 46          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER4_ARATH (Probable ferredoxin-4, chloroplastic OS=Arabidopsis thaliana GN=FD4 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.909e-15
Identity = 28/54 (51.85%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G C +C GK+VSG VDQS  SFL+++QI +G++LTC A P  D  + THK+ +L
Sbjct:   94 GTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147          

HSP 2 Score: 35.039 bits (79), Expect = 5.909e-15
Identity = 14/19 (73.68%), Postives = 18/19 (94.74%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAG 59
            IL++AE AGL+LPYSCR+G
Sbjct:   76 ILESAENAGLELPYSCRSG 94          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER2_SYNP6 (Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF2 PE=3 SV=2)

HSP 1 Score: 58.5362 bits (140), Expect = 9.970e-11
Identity = 24/54 (44.44%), Postives = 36/54 (66.67%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G C++C  +++SG VDQ +   +  +   +G+ L C AYP SD+ IETHKE+EL
Sbjct:   43 GVCTTCAARILSGEVDQPDAMGVGPEPAKQGYTLLCVAYPRSDLKIETHKEDEL 96          

HSP 2 Score: 28.4906 bits (62), Expect = 9.970e-11
Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAG 59
            +LD+A+ AG+DLP SC  G
Sbjct:   25 VLDSAQAAGVDLPASCLTG 43          
The following BLAST results are available for this feature:
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER2_APHSA1.132e-1758.18Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2[more]
FER6_MAIZE1.411e-1759.26Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE... [more]
FERH_ANASP1.473e-1763.64Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC... [more]
FER2_EQUAR2.491e-1774.07Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1[more]
FER2_PLEBO1.205e-1655.56Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 S... [more]
FERV_ANAVT9.842e-1659.26Ferredoxin, vegetative OS=Anabaena variabilis (str... [more]
FERH_FREDI2.812e-1561.11Ferredoxin, heterocyst OS=Fremyella diplosiphon GN... [more]
FER4_ARATH5.909e-1551.85Probable ferredoxin-4, chloroplastic OS=Arabidopsi... [more]
FER2_SYNP69.970e-1144.44Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 271... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00020 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00020 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622929 ID=BQ622929; Name=BQ622929; organism=Citrus sinensis; type=EST; length=486bp
TTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGC
AGGGCTGGGGCCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCG
TTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATTGGAGAAGGT
TTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATGTTACTATAGAGAC
TCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCTCTTGATATCTCAT
TATTATCTTCTCTTTTATGTGTTGTGTTTTGTCTGATTATTTTAATGCTT
TGAAAGGGATATTGAGTAATTTGAGAATGATTCTTGTAATGTGTTTTTAT
TTCTTGTTGCAAAGAAGTTGTTGTAATTGCACCGGCCATGAATGCGCATC
GTACCTAGAGGGGGAGGTTTCTCATCCCATCCGAACATGGTACCGTTCTA
TAATTAAGAGTCAAGCAAGAACAATAGATCTTTCGT
back to top