BQ622929

Overview
NameBQ622929
Unique NameBQ622929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:317..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FERB_ALOMA (Ferredoxin-B OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.650e-24
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKV +G VDQS+ SFLDDDQIGEG+VLTC AYPTSDV IETHKEEEL
Sbjct:   43 GSCSSCAGKVKNGNVDQSDGSFLDDDQIGEGWVLTCVAYPTSDVVIETHKEEEL 96          

HSP 2 Score: 38.1206 bits (87), Expect = 2.650e-24
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G+DLPYSCRAG+
Sbjct:   25 ILDQAEEEGIDLPYSCRAGS 44          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_SCEQU (Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.650e-24
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKV +GTVDQS+QSFLDD Q+  GFVLTC AYPTSD TI THKEE+L
Sbjct:   42 GACSSCAGKVEAGTVDQSDQSFLDDSQMDGGFVLTCVAYPTSDCTIATHKEEDL 95          

HSP 2 Score: 43.8986 bits (102), Expect = 2.650e-24
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEEAGLDLPYSCRAGA
Sbjct:   24 ILDAAEEAGLDLPYSCRAGA 43          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER2_SPIOL (Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.450e-24
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKV SG+VDQS+QSFL+D Q+ EG+VLTC AYPT DVTIETHKEEEL
Sbjct:   42 GACSSCAGKVTSGSVDQSDQSFLEDGQMEEGWVLTCIAYPTGDVTIETHKEEEL 95          

HSP 2 Score: 41.2022 bits (95), Expect = 3.450e-24
Identity = 18/20 (90.00%), Postives = 19/20 (95.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEE G+DLPYSCRAGA
Sbjct:   24 ILDAAEEKGMDLPYSCRAGA 43          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_PHYAF (Ferredoxin OS=Physalis alkekengi var. francheti PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.490e-24
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKV +GTVDQS+ +FLDDDQ+ +GFVLTC AYP SDVTIETHKEEEL
Sbjct:   42 GSCSSCAGKVTAGTVDQSDGNFLDDDQVADGFVLTCVAYPQSDVTIETHKEEEL 95          

HSP 2 Score: 38.1206 bits (87), Expect = 4.490e-24
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEE G DLPYSCRAG+
Sbjct:   24 ILDAAEEQGHDLPYSCRAGS 43          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_HORVU (Ferredoxin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.490e-24
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GK+VSG +DQS+QSFLDDDQ+ EG+VLTCAAYP SDV IETHKEEEL
Sbjct:   42 GSCSSCAGKLVSGEIDQSDQSFLDDDQMEEGWVLTCAAYPKSDVVIETHKEEEL 95          

HSP 2 Score: 38.1206 bits (87), Expect = 4.490e-24
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G+DLPYSCRAG+
Sbjct:   24 ILDQAEEEGIDLPYSCRAGS 43          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_NOSMU (Ferredoxin OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 4.490e-24
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK+VSGTVDQS+QSFLDDDQI  G+VLTC AYPTSDV I+THKEE+L
Sbjct:   45 GACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          

HSP 2 Score: 38.5058 bits (88), Expect = 4.490e-24
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEE G DLP+SCRAGA
Sbjct:   27 ILDAAEEEGYDLPFSCRAGA 46          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER1_ANASP (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=petF PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 4.490e-24
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK+VSGTVDQS+QSFLDDDQI  G+VLTC AYPTSDV I+THKEE+L
Sbjct:   45 GACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          

HSP 2 Score: 38.5058 bits (88), Expect = 4.490e-24
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEE G DLP+SCRAGA
Sbjct:   27 ILDAAEEQGYDLPFSCRAGA 46          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER1_ANASO (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=petF PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 4.490e-24
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK+VSGTVDQS+QSFLDDDQI  G+VLTC AYPTSDV I+THKEE+L
Sbjct:   45 GACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          

HSP 2 Score: 38.5058 bits (88), Expect = 4.490e-24
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEE G DLP+SCRAGA
Sbjct:   27 ILDAAEEQGYDLPFSCRAGA 46          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_DATME (Ferredoxin OS=Datura metel PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.844e-24
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 225
            G CSSC GKV +GTVDQS+ ++LDDDQ+ EGFVLTC AYP SDVTIETHKEEEL G
Sbjct:   42 GSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEELTG 97          

HSP 2 Score: 36.1946 bits (82), Expect = 5.844e-24
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G DLPYSCRAG+
Sbjct:   24 ILDRAEEEGHDLPYSCRAGS 43          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_DATIN (Ferredoxin OS=Datura inoxia PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.844e-24
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 225
            G CSSC GKV +GTVDQS+ ++LDDDQ+ EGFVLTC AYP SDVTIETHKEEEL G
Sbjct:   42 GSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEELTG 97          

HSP 2 Score: 36.1946 bits (82), Expect = 5.844e-24
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G DLPYSCRAG+
Sbjct:   24 ILDRAEEEGHDLPYSCRAGS 43          
The following BLAST results are available for this feature:
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FERB_ALOMA2.650e-2481.48Ferredoxin-B OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER_SCEQU2.650e-2475.93Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1[more]
FER2_SPIOL3.450e-2477.78Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1[more]
FER_PHYAF4.490e-2477.78Ferredoxin OS=Physalis alkekengi var. francheti PE... [more]
FER_HORVU4.490e-2479.63Ferredoxin OS=Hordeum vulgare PE=1 SV=1[more]
FER_NOSMU4.490e-2477.78Ferredoxin OS=Nostoc muscorum PE=1 SV=2[more]
FER1_ANASP4.490e-2477.78Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=... [more]
FER1_ANASO4.490e-2477.78Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=... [more]
FER_DATME5.844e-2476.79Ferredoxin OS=Datura metel PE=1 SV=1[more]
FER_DATIN5.844e-2476.79Ferredoxin OS=Datura inoxia PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00020 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00020 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622929 ID=BQ622929; Name=BQ622929; organism=Citrus sinensis; type=EST; length=486bp
TTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGC
AGGGCTGGGGCCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCG
TTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATTGGAGAAGGT
TTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATGTTACTATAGAGAC
TCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCTCTTGATATCTCAT
TATTATCTTCTCTTTTATGTGTTGTGTTTTGTCTGATTATTTTAATGCTT
TGAAAGGGATATTGAGTAATTTGAGAATGATTCTTGTAATGTGTTTTTAT
TTCTTGTTGCAAAGAAGTTGTTGTAATTGCACCGGCCATGAATGCGCATC
GTACCTAGAGGGGGAGGTTTCTCATCCCATCCGAACATGGTACCGTTCTA
TAATTAAGAGTCAAGCAAGAACAATAGATCTTTCGT
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