BQ622929 | Citrus Genome Database

Overview


Name	BQ622929
Unique Name	BQ622929
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	486

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1721	contig	Csv1_Contig1721:317..801.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_DATAR (Ferredoxin OS=Datura arborea PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.677e-23
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 225
            G CSSC GKV +GTVDQS+ +FLDDDQ+ +GFVLTC AYP SDVTIETHKEEEL G
Sbjct:   42 GSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEELTG 97

HSP 2 Score: 34.6538 bits (78), Expect = 1.677e-23
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G +LPYSCRAG+
Sbjct:   24 ILDQAEEEGHELPYSCRAGS 43

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_LEUGL (Ferredoxin OS=Leucaena glauca PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.677e-23
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 225
            G CSSC GK+V G +DQS+QSFLDD+QI EG+VLTCAAYP SDV IETHKEEEL G
Sbjct:   41 GSCSSCAGKLVEGDLDQSDQSFLDDEQIEEGWVLTCAAYPRSDVVIETHKEEELTG 96

HSP 2 Score: 36.5798 bits (83), Expect = 1.677e-23
Identity = 15/20 (75.00%), Postives = 18/20 (90.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G++LPYSCRAG+
Sbjct:   23 ILDQAEELGIELPYSCRAGS 42

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_BUMFI (Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.183e-23
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GKV+SGT+DQSEQSFLDDDQ+G GF+LTC AYPTSD  ++TH E++L
Sbjct:   44 GACSTCAGKVLSGTIDQSEQSFLDDDQMGAGFLLTCVAYPTSDCKVQTHAEDDL 97

HSP 2 Score: 39.6614 bits (91), Expect = 2.183e-23
Identity = 17/20 (85.00%), Postives = 19/20 (95.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEE G++LPYSCRAGA
Sbjct:   26 ILDAAEEQGIELPYSCRAGA 45

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_GUITH (Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 2.183e-23
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GKV +G+VDQS+QSFLDD QIG+GFVLTC AYPTSD TI TH+EE L
Sbjct:   43 GACSTCAGKVAAGSVDQSDQSFLDDSQIGDGFVLTCVAYPTSDCTILTHQEEGL 96

HSP 2 Score: 41.2022 bits (95), Expect = 2.183e-23
Identity = 18/20 (90.00%), Postives = 19/20 (95.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEE G+DLPYSCRAGA
Sbjct:   25 ILDAAEEQGIDLPYSCRAGA 44

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER1_CYACA (Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 2.183e-23
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK++SGTVDQS+QSFLDD+QI EGFVLTC AYPTS+ TI TH+EE L
Sbjct:   45 GACSTCAGKLISGTVDQSDQSFLDDEQIKEGFVLTCVAYPTSNCTILTHQEEAL 98

HSP 2 Score: 41.2022 bits (95), Expect = 2.183e-23
Identity = 18/20 (90.00%), Postives = 19/20 (95.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEE G+DLPYSCRAGA
Sbjct:   27 ILDAAEEQGIDLPYSCRAGA 46

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER5_MAIZE (Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.769e-23
Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKVVSG++DQS+QSFLDD Q+ +G+VLTC AYPTSDV IETHKE++L
Sbjct:   80 GSCSSCAGKVVSGSLDQSDQSFLDDSQVADGWVLTCVAYPTSDVVIETHKEDDL 133

HSP 2 Score: 37.7354 bits (86), Expect = 2.769e-23
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G+DLPYSCRAG+
Sbjct:   62 ILDYAEEEGIDLPYSCRAGS 81

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_ATRBE (Ferredoxin OS=Atropa belladonna PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.841e-23
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 225
            G CSSC GKV +GTVDQS+ +FLDDDQ+ +GFVLTC AYP SDVTIETHKEEEL G
Sbjct:   42 GSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEELTG 97

HSP 2 Score: 34.6538 bits (78), Expect = 2.841e-23
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G +LPYSCRAG+
Sbjct:   24 ILDQAEEEGHELPYSCRAGS 43

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER1_HYONI (Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.841e-23
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 225
            G CSSC GKV +GTVDQS+ +FLDDDQI +GFVLTC AYP SDVTIETHKEE+L G
Sbjct:   42 GSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEDLTG 97

HSP 2 Score: 34.6538 bits (78), Expect = 2.841e-23
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G +LPYSCRAG+
Sbjct:   24 ILDQAEEEGHELPYSCRAGS 43

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_SAMNI (Ferredoxin OS=Sambucus nigra PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.841e-23
Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GK+V+G+VDQS+QSFLDD+QI EG+VLTC AYP SDVTIETHKEEEL
Sbjct:   42 GSCSSCAGKLVAGSVDQSDQSFLDDEQIEEGWVLTCVAYPKSDVTIETHKEEEL 95

HSP 2 Score: 35.4242 bits (80), Expect = 2.841e-23
Identity = 14/20 (70.00%), Postives = 18/20 (90.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            IL+ AEE G+D+PYSCRAG+
Sbjct:   24 ILEHAEELGIDIPYSCRAGS 43

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER1_PLEBO (Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.841e-23
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK+ +GTVDQS+QSFLDDDQI  G+VLTC AYPTSD TI TH+EE+L
Sbjct:   45 GACSTCAGKITAGTVDQSDQSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEEDL 98

HSP 2 Score: 41.2022 bits (95), Expect = 2.841e-23
Identity = 18/20 (90.00%), Postives = 19/20 (95.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEE G+DLPYSCRAGA
Sbjct:   27 ILDAAEEQGIDLPYSCRAGA 46

The following BLAST results are available for this feature:

BLAST of BQ622929 vs. ExPASy Swiss-Prot

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109


Match Name	E-value	Identity	Description
FER_DATAR	1.677e-23	76.79	Ferredoxin OS=Datura arborea PE=1 SV=1	[more]
FER_LEUGL	1.677e-23	76.79	Ferredoxin OS=Leucaena glauca PE=1 SV=1	[more]
FER_BUMFI	2.183e-23	70.37	Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1	[more]
FER_GUITH	2.183e-23	74.07	Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3	[more]
FER1_CYACA	2.183e-23	74.07	Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=...	[more]
FER5_MAIZE	2.769e-23	74.07	Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE...	[more]
FER_ATRBE	2.841e-23	76.79	Ferredoxin OS=Atropa belladonna PE=1 SV=1	[more]
FER1_HYONI	2.841e-23	76.79	Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1	[more]
FER_SAMNI	2.841e-23	79.63	Ferredoxin OS=Sambucus nigra PE=1 SV=1	[more]
FER1_PLEBO	2.841e-23	72.22	Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 ...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00020 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00020 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ622929 ID=BQ622929; Name=BQ622929; organism=Citrus sinensis; type=EST; length=486bp
TTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGC
AGGGCTGGGGCCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCG
TTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATTGGAGAAGGT
TTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATGTTACTATAGAGAC
TCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCTCTTGATATCTCAT
TATTATCTTCTCTTTTATGTGTTGTGTTTTGTCTGATTATTTTAATGCTT
TGAAAGGGATATTGAGTAATTTGAGAATGATTCTTGTAATGTGTTTTTAT
TTCTTGTTGCAAAGAAGTTGTTGTAATTGCACCGGCCATGAATGCGCATC
GTACCTAGAGGGGGAGGTTTCTCATCCCATCCGAACATGGTACCGTTCTA
TAATTAAGAGTCAAGCAAGAACAATAGATCTTTCGT