BQ622929

Overview
NameBQ622929
Unique NameBQ622929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:317..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_BRYMA (Ferredoxin OS=Bryopsis maxima PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.960e-22
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 225
            G CS+C GK+  GTVDQSEQ+FLDDDQ+ EG+VLTC AYPTSD TI TH+EEE+ G
Sbjct:   43 GSCSTCAGKIEGGTVDQSEQTFLDDDQMEEGYVLTCVAYPTSDCTILTHQEEEMIG 98          

HSP 2 Score: 35.039 bits (79), Expect = 3.960e-22
Identity = 13/20 (65.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G+D+P+SCR+G+
Sbjct:   25 ILDVAEEEGIDIPFSCRSGS 44          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER2_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.960e-22
Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK+V G+VDQS+QSFLD++QI  GF+LTC AYPTSD  I+TH+EE L
Sbjct:   43 GACSTCAGKLVKGSVDQSDQSFLDEEQINNGFILTCVAYPTSDCVIQTHQEEAL 96          

HSP 2 Score: 40.817 bits (94), Expect = 3.960e-22
Identity = 18/20 (90.00%), Postives = 19/20 (95.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEE G+DLPYSCRAGA
Sbjct:   25 ILDAAEEQGVDLPYSCRAGA 44          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER3_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.960e-22
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK++ G VDQS+QSFLDDDQ+  GFVLTC AYPTS+ TI TH+EE L
Sbjct:   44 GACSTCAGKLLEGEVDQSDQSFLDDDQVKAGFVLTCVAYPTSNATILTHQEESL 97          

HSP 2 Score: 41.9726 bits (97), Expect = 3.960e-22
Identity = 19/20 (95.00%), Postives = 19/20 (95.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEE GLDLPYSCRAGA
Sbjct:   26 ILDAAEEQGLDLPYSCRAGA 45          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER2_PHYES (Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.705e-22
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELA 222
            G CSSC GKV +G+V+Q + SFLD++Q+  G+VLTC AYPTSDVTIETHKEE+L+
Sbjct:   43 GACSSCAGKVTAGSVNQEDGSFLDEEQMEAGWVLTCVAYPTSDVTIETHKEEDLS 97          

HSP 2 Score: 40.817 bits (94), Expect = 6.705e-22
Identity = 17/20 (85.00%), Postives = 19/20 (95.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            +LDAAE+ GLDLPYSCRAGA
Sbjct:   25 VLDAAEDTGLDLPYSCRAGA 44          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER2_PHYAM (Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.135e-21
Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKV +G V+Q + SFL+++Q+  G+VLTC AYPTSDVTIETHKEE+L
Sbjct:   43 GACSSCAGKVTAGAVNQEDGSFLEEEQMEAGWVLTCVAYPTSDVTIETHKEEDL 96          

HSP 2 Score: 42.3578 bits (98), Expect = 1.135e-21
Identity = 18/20 (90.00%), Postives = 20/20 (100.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            +LDAAEE+GLDLPYSCRAGA
Sbjct:   25 VLDAAEESGLDLPYSCRAGA 44          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FERA_ALOMA (Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.477e-21
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKV  G VDQS+ SFLDD+Q+ +G+VLTC A+PTSDV IETHKEEEL
Sbjct:   42 GSCSSCAGKVKQGEVDQSDGSFLDDEQMEQGWVLTCVAFPTSDVVIETHKEEEL 95          

HSP 2 Score: 38.1206 bits (87), Expect = 1.477e-21
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G+DLPYSCRAG+
Sbjct:   24 ILDQAEEEGIDLPYSCRAGS 43          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_PERBI (Ferredoxin OS=Peridinium bipes PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.923e-21
Identity = 37/54 (68.52%), Postives = 46/54 (85.19%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKV++G++DQS+Q+FLDDDQ G+G+ LTC  YPTSDVTI+TH E EL
Sbjct:   40 GSCSSCAGKVLTGSIDQSDQAFLDDDQGGDGYCLTCVTYPTSDVTIKTHCESEL 93          

HSP 2 Score: 37.3502 bits (85), Expect = 1.923e-21
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE GL+LPYSCRAG+
Sbjct:   22 ILDKAEEEGLELPYSCRAGS 41          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_ODOSI (Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.923e-21
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GKV  G +DQSEQ+FLDDDQ+G GFVLTC AYP SD T+  H+E+EL
Sbjct:   45 GACSTCAGKVTEGDIDQSEQTFLDDDQVGAGFVLTCIAYPKSDCTVLVHQEDEL 98          

HSP 2 Score: 38.891 bits (89), Expect = 1.923e-21
Identity = 16/20 (80.00%), Postives = 19/20 (95.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            +LDAAEE G++LPYSCRAGA
Sbjct:   27 LLDAAEEQGIELPYSCRAGA 46          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_SYNP4 (Ferredoxin OS=Synechococcus sp. (strain PCC 7418) PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.923e-21
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK+  G +DQS+QSFLDDDQI  G+VLTC AYP SD TI TH+EEEL
Sbjct:   45 GACSTCAGKIKEGEIDQSDQSFLDDDQIEAGYVLTCVAYPASDCTIITHQEEEL 98          

HSP 2 Score: 39.6614 bits (91), Expect = 1.923e-21
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G+DLPYSCRAGA
Sbjct:   27 ILDVAEEEGIDLPYSCRAGA 46          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_PORYE (Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.923e-21
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GKV  GTVDQ++QSFLDDDQ+  G+VLTC AYP+SD TI TH E+EL
Sbjct:   45 GACSTCAGKVTEGTVDQADQSFLDDDQLLAGYVLTCIAYPSSDCTISTHVEQEL 98          

HSP 2 Score: 39.6614 bits (91), Expect = 1.923e-21
Identity = 17/20 (85.00%), Postives = 19/20 (95.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEE G++LPYSCRAGA
Sbjct:   27 ILDAAEEEGIELPYSCRAGA 46          
The following BLAST results are available for this feature:
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_BRYMA3.960e-2271.43Ferredoxin OS=Bryopsis maxima PE=1 SV=1[more]
FER2_CYACA3.960e-2266.67Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER3_CYACA3.960e-2268.52Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER2_PHYES6.705e-2267.27Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1[more]
FER2_PHYAM1.135e-2166.67Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1[more]
FERA_ALOMA1.477e-2172.22Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER_PERBI1.923e-2168.52Ferredoxin OS=Peridinium bipes PE=1 SV=1[more]
FER_ODOSI1.923e-2166.67Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2[more]
FER_SYNP41.923e-2168.52Ferredoxin OS=Synechococcus sp. (strain PCC 7418) ... [more]
FER_PORYE1.923e-2168.52Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00020 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00020 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622929 ID=BQ622929; Name=BQ622929; organism=Citrus sinensis; type=EST; length=486bp
TTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGC
AGGGCTGGGGCCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCG
TTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATTGGAGAAGGT
TTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATGTTACTATAGAGAC
TCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCTCTTGATATCTCAT
TATTATCTTCTCTTTTATGTGTTGTGTTTTGTCTGATTATTTTAATGCTT
TGAAAGGGATATTGAGTAATTTGAGAATGATTCTTGTAATGTGTTTTTAT
TTCTTGTTGCAAAGAAGTTGTTGTAATTGCACCGGCCATGAATGCGCATC
GTACCTAGAGGGGGAGGTTTCTCATCCCATCCGAACATGGTACCGTTCTA
TAATTAAGAGTCAAGCAAGAACAATAGATCTTTCGT
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