BQ622929

Overview
NameBQ622929
Unique NameBQ622929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:317..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_SYNLI (Ferredoxin OS=Synechococcus lividus PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.255e-21
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK++ G VDQS+QSFLDDDQI +GFVLTC AYP SD  I TH+EEEL
Sbjct:   43 GACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTHQEEEL 96          

HSP 2 Score: 38.891 bits (89), Expect = 3.255e-21
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE GLDLP+SCRAGA
Sbjct:   25 ILDVAEEQGLDLPFSCRAGA 44          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER1_SOLLC (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.099e-21
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKV +G+VDQS+ +FLD+DQ   GFVLTC AYP  DVTIETHKEEEL
Sbjct:   89 GSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFVLTCVAYPKGDVTIETHKEEEL 142          

HSP 2 Score: 36.1946 bits (82), Expect = 4.099e-21
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G DLPYSCRAG+
Sbjct:   71 ILDQAEEEGHDLPYSCRAGS 90          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_PORPU (Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 4.236e-21
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GKV  G+VDQS+QSFLDD+Q+ +G+VLTC AYP SD TI TH E+EL
Sbjct:   45 GACSTCAGKVTEGSVDQSDQSFLDDEQLLKGYVLTCIAYPESDCTILTHVEQEL 98          

HSP 2 Score: 41.5874 bits (96), Expect = 4.236e-21
Identity = 18/20 (90.00%), Postives = 20/20 (100.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEEAG++LPYSCRAGA
Sbjct:   27 ILDAAEEAGIELPYSCRAGA 46          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_PORUM (Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.171e-21
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GKV  GTVDQS+QSFLDD+Q+ +G+VLTC AYP SD TI TH E+EL
Sbjct:   44 GACSTCAGKVTEGTVDQSDQSFLDDEQMLKGYVLTCIAYPESDCTILTHVEQEL 97          

HSP 2 Score: 39.6614 bits (91), Expect = 7.171e-21
Identity = 17/20 (85.00%), Postives = 19/20 (95.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEE G++LPYSCRAGA
Sbjct:   26 ILDAAEEEGIELPYSCRAGA 45          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_MEDSA (Ferredoxin OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.330e-21
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKV +G V+QS+ SFLDDDQI EG+VLTC AY  SDVTIETHKEEEL
Sbjct:   42 GSCSSCAGKVAAGEVNQSDGSFLDDDQIEEGWVLTCVAYAKSDVTIETHKEEEL 95          

HSP 2 Score: 34.2686 bits (77), Expect = 9.330e-21
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G+ LPYSCRAG+
Sbjct:   24 ILDHAEEEGIVLPYSCRAGS 43          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_RHOPL (Ferredoxin OS=Rhodymenia palmata PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.330e-21
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C G V  GTVDQS+QSFLDDDQ+ + FVLTC AYPTSD  I+TH+EE+L
Sbjct:   43 GACSTCAGIVELGTVDQSDQSFLDDDQLNDSFVLTCVAYPTSDCQIKTHQEEKL 96          

HSP 2 Score: 38.5058 bits (88), Expect = 9.330e-21
Identity = 15/20 (75.00%), Postives = 19/20 (95.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            +LD+AE+ G+DLPYSCRAGA
Sbjct:   25 VLDSAEDQGIDLPYSCRAGA 44          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 9.330e-21
Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C G++V G VDQSE SFL+DD   +GFVLTC AYP SD  I THKE EL
Sbjct:   44 GACSTCAGQIVKGQVDQSEGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETEL 97          

HSP 2 Score: 42.743 bits (99), Expect = 9.330e-21
Identity = 19/20 (95.00%), Postives = 20/20 (100.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEEAG+DLPYSCRAGA
Sbjct:   26 ILDAAEEAGVDLPYSCRAGA 45          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_ARCLA (Ferredoxin OS=Arctium lappa PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.214e-20
Identity = 41/54 (75.93%), Postives = 47/54 (87.04%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKV +G+VDQS+ S+LDDDQ+  G+VLTC AYPTSDVTIETHKEEEL
Sbjct:   42 GSCSSCAGKVTAGSVDQSDGSYLDDDQMEAGWVLTCVAYPTSDVTIETHKEEEL 95          

HSP 2 Score: 30.4166 bits (67), Expect = 1.214e-20
Identity = 17/21 (80.95%), Postives = 18/21 (85.71%), Query Frame = 3
Query:    3 ILD-AAEEAGLDLPYSCRAGA 62
            ILD AAEE G DLPYSCRAG+
Sbjct:   24 ILDHAAEEVG-DLPYSCRAGS 43          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_APHSA (Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.579e-20
Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK+VSG     +QSFLDDDQI  G++LTC AYPT D  IETHKEE L
Sbjct:   43 GACSTCAGKLVSGPAPDEDQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEAL 96          

HSP 2 Score: 40.4318 bits (93), Expect = 1.579e-20
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE GLDLPYSCRAGA
Sbjct:   25 ILDVAEEEGLDLPYSCRAGA 44          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_THEVL (Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=petF1 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.055e-20
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK++ G VDQS+QSFLDDDQI +GFVLTC AYP SD  I T++EEEL
Sbjct:   44 GACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          

HSP 2 Score: 38.891 bits (89), Expect = 2.055e-20
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE GLDLP+SCRAGA
Sbjct:   26 ILDVAEEQGLDLPFSCRAGA 45          
The following BLAST results are available for this feature:
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_SYNLI3.255e-2170.37Ferredoxin OS=Synechococcus lividus PE=1 SV=2[more]
FER1_SOLLC4.099e-2172.22Ferredoxin-1, chloroplastic OS=Solanum lycopersicu... [more]
FER_PORPU4.236e-2166.67Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2[more]
FER_PORUM7.171e-2168.52Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV... [more]
FER_MEDSA9.330e-2175.93Ferredoxin OS=Medicago sativa PE=1 SV=1[more]
FER_RHOPL9.330e-2168.52Ferredoxin OS=Rhodymenia palmata PE=1 SV=1[more]
FER2_RAPSA9.330e-2164.81Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=... [more]
FER_ARCLA1.214e-2075.93Ferredoxin OS=Arctium lappa PE=1 SV=1[more]
FER_APHSA1.579e-2064.81Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2[more]
FER_THEVL2.055e-2068.52Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=pe... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00020 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00020 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622929 ID=BQ622929; Name=BQ622929; organism=Citrus sinensis; type=EST; length=486bp
TTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGC
AGGGCTGGGGCCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCG
TTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATTGGAGAAGGT
TTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATGTTACTATAGAGAC
TCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCTCTTGATATCTCAT
TATTATCTTCTCTTTTATGTGTTGTGTTTTGTCTGATTATTTTAATGCTT
TGAAAGGGATATTGAGTAATTTGAGAATGATTCTTGTAATGTGTTTTTAT
TTCTTGTTGCAAAGAAGTTGTTGTAATTGCACCGGCCATGAATGCGCATC
GTACCTAGAGGGGGAGGTTTCTCATCCCATCCGAACATGGTACCGTTCTA
TAATTAAGAGTCAAGCAAGAACAATAGATCTTTCGT
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