BQ622931

Overview
NameBQ622931
Unique NameBQ622931
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length523
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: ERF3B_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Mus musculus GN=Gspt2 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.618e-32
Identity = 73/153 (47.71%), Postives = 95/153 (62.09%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+ G      LD +    R  +GP R+PI+DK+KDMGTVV+GK+ESGS+ +G  L++MPNK  V+VL I  DD       PGENL+IRL GIEEE+IL GF+L   +    +   F  Q+ I+E    +I   GY AVLHIH  +EE EI  L
Sbjct:  411 WYTGLPFIPYLDSLPNFNRSIDGPIRLPIVDKYKDMGTVVLGKLESGSIFKGQQLVMMPNKHSVEVLGIVSDDAETDFVAPGENLKIRLKGIEEEEILPGFILCEPSNLCHSGRTFDVQIVIIE--HKSIICPGYNAVLHIHTCIEEVEITAL 561          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: ERF3A_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Homo sapiens GN=GSPT1 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.759e-32
Identity = 74/153 (48.37%), Postives = 95/153 (62.09%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+ G      LD +    R  +GP R+PI+DK+KDMGTVV+GK+ESGS+ +G  L++MPNK  V+VL I  DD       PGENL+IRL GIEEE+IL GF+L        +   F AQ+ I+E    +I   GY AVLHIH  +EE EI  L
Sbjct:  278 WYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKYKDMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEEILPGFILCDPNNLCHSGRTFDAQIVIIE--HKSIICPGYNAVLHIHTCIEEVEITAL 428          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: ERF3_SCHPO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Schizosaccharomyces pombe GN=sup35 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 3.729e-29
Identity = 66/154 (42.86%), Postives = 98/154 (63.64%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+ GP L E LD +    R  N PF MPI  K+KD+GT++ GK+E+GS+++  ++LVMP    ++V AIY + D  +  +  G+ +R+R+ G ++ D+ +G+VL+S   PV A T FIAQ+ ILEL   +I T GY  V+HIH  VEE    +L
Sbjct:  445 WYQGPSLLEYLDSMTHLERKVNAPFIMPIASKYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTGYVLTSTKNPVHATTRFIAQIAILEL--PSILTTGYSCVMHIHTAVEEVSFAKL 595          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: ERF3_DICDI (Eukaryotic peptide chain release factor GTP-binding subunit OS=Dictyostelium discoideum GN=erf3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.373e-23
Identity = 63/171 (36.84%), Postives = 98/171 (57.31%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFKDMGTV-VMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEED-ILSGFVLSSVAKPVAAVTEFIAQLQILEL-LDNAIFTAGYKAVLHIHAVVEECEIVEL-ATSNRSEDQETHEK 503
            W++GP L   LD +    R+  G  R+PI   +KD G V V+GKVESG++  G S+ +MP K +V+V+++  D    + A PGEN+ I L GIE +D I  G +L+ + +PV  V+E  A + IL++  +  +FT  + A+ H H  VE+  +  L AT +     E  +K
Sbjct:  322 WYSGPSLIGTLDNLSGMERNEGGALRIPITTSYKDRGIVNVIGKVESGTISVGQSIHIMPGKTKVEVISLTGDICSFKTARPGENITIALKGIEGDDSIRPGSILAEINRPVPVVSEIEAIVYILDMPEERRLFTPSFSAIFHAHTAVEDVTVKSLIATIDTKTSTEIKQK 492          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_DESMO (Elongation factor 1-alpha OS=Desulfurococcus mobilis GN=tuf PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.532e-22
Identity = 53/155 (34.19%), Postives = 83/155 (53.55%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+NGP L EALD +E+ P+  N P R+PI D +    +G V +G+VE+G ++ GD L+ MP     +V  I     ++  A PG+N+   + G+E++DI  G V  S+  P     EF A++ +  +        GY  V+H+H     C I E+
Sbjct:  211 WYNGPTLVEALDTLEVPPKPINKPLRIPIQDVYNISGIGVVPVGRVETGVLKVGDKLVFMPAGLVAEVKTIETHHTKIEKAEPGDNIGFNVKGVEKKDIKRGDVAGSLDVPPTVADEFTARIMV--MWHPTAIAVGYTPVIHVHTASVACRITEI 363          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_CALMQ (Elongation factor 1-alpha OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.882e-21
Identity = 55/155 (35.48%), Postives = 83/155 (53.55%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+NGP L EALD IE  PR  + P R+PI D F     GTV+ G+VESG V+ GD+++ +P      V +I     ++  A  G+N+ I + G E +D+  G V+  +  P     E +A++ +LE         GY  V+H+H      +I+EL
Sbjct:  217 WYNGPVLLEALDAIEPPPRPIDKPLRLPIQDVFSITGAGTVITGRVESGVVKVGDTIVALPPAKVGDVRSIETHHMKLEEAKAGDNVGINVRGFERQDLKRGDVVGHLNNPPTVAEEIVARIAVLE--HPTTIGVGYTPVMHVHTATVPTQIIEL 369          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_PICTO (Elongation factor 1-alpha OS=Picrophilus torridus GN=tuf PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.088e-20
Identity = 51/166 (30.72%), Postives = 86/166 (51.81%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELATSNRSEDQET 494
            WW GP L EAL+ +++  +  + P R+P+ D +    +GTV +G++E+G ++ GD ++ MP      V +I      ++ AGPG+N+   + GI + ++  G V      P   V  F AQ+ +L     ++  AGYK V H+H     C I E+  +   +D  T
Sbjct:  203 WWKGPTLMEALNALQVPAKPVDKPLRLPVEDVYSITGIGTVPVGRIETGVMKVGDKVIFMPANKAGDVKSIEMHHEPMQQAGPGDNIGFNVRGIAKNELKRGDVCGPANNPPTVVKGFTAQIVVLN--HPSVIAAGYKPVFHVHTAQVACRIDEIVKTINPKDGTT 366          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_PYRIL (Elongation factor 1-alpha OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.420e-20
Identity = 57/157 (36.31%), Postives = 84/157 (53.50%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELAT 467
            W+NGP L EALD  +  PR  + P RMPI D F     GTVV+G+VE+G ++ GD ++++P      V +I     ++  A PG+N+ + + GI +ED+  G VL  V        E +A++ I  L        GY  V+HIH      +IVEL +
Sbjct:  218 WYNGPTLLEALDTFQPPPRPVDKPLRMPIQDVFTITGAGTVVVGRVETGVLKVGDRVVIVPPAKVGDVRSIETHHMKLEQAQPGDNIGVNVRGISKEDVRRGDVLGKVDNVPTVAEEIVARVVI--LWHPTAIGPGYAPVMHIHTATVPVQIVELVS 372          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_METS5 (Elongation factor 1-alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.423e-20
Identity = 50/155 (32.26%), Postives = 84/155 (54.19%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+NGP L EALD +EI P+  + P R+PI + +    +GTV +G+VESG ++ GD ++ MP     +V +I     ++  A PG+N+   + GI+++D+  G V+     P     EF A  +++ +        GY  V+H+H     C + E+
Sbjct:  209 WYNGPTLEEALDMLEIPPKPVDKPLRLPIQEVYSISGVGTVPVGRVESGVMKVGDKIVFMPAGKSAEVRSIETHHTKLEKAEPGDNIGFNVRGIDKKDVKRGDVVGHTTNPPTVAEEFTA--RVIVVWHPTALAVGYTPVVHVHTASIACRVSEI 361          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_SULAC (Elongation factor 1-alpha OS=Sulfolobus acidocaldarius GN=tuf PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.398e-20
Identity = 51/157 (32.48%), Postives = 85/157 (54.14%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELAT 467
            W+NGP L E LD++EI P+  + P R+PI + +    +G V +G++ESG ++ GD ++ MP     +V +I     ++  A PG+N+   + G+E++D+  G V  SV  P     EF A  Q++ +        GY  VLH+H     C + E+ +
Sbjct:  209 WYNGPTLEELLDQLEIPPKPVDKPLRIPIQEVYSISGVGVVPVGRIESGVLKVGDKIVFMPVGKIGEVRSIETHHTKIDKAEPGDNIGFNVRGVEKKDVKRGDVAGSVQNPPTVADEFTA--QVIVIWHPTAVGVGYTPVLHVHTASIACRVSEITS 363          
The following BLAST results are available for this feature:
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ERF3B_MOUSE1.618e-3247.71Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3A_HUMAN2.759e-3248.37Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_SCHPO3.729e-2942.86Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_DICDI1.373e-2336.84Eukaryotic peptide chain release factor GTP-bindin... [more]
EF1A_DESMO7.532e-2234.19Elongation factor 1-alpha OS=Desulfurococcus mobil... [more]
EF1A_CALMQ4.882e-2135.48Elongation factor 1-alpha OS=Caldivirga maquilinge... [more]
EF1A_PICTO1.088e-2030.72Elongation factor 1-alpha OS=Picrophilus torridus ... [more]
EF1A_PYRIL1.420e-2036.31Elongation factor 1-alpha OS=Pyrobaculum islandicu... [more]
EF1A_METS52.423e-2032.26Elongation factor 1-alpha OS=Metallosphaera sedula... [more]
EF1A_SULAC5.398e-2032.48Elongation factor 1-alpha OS=Sulfolobus acidocalda... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00022 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00022 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622931 ID=BQ622931; Name=BQ622931; organism=Citrus sinensis; type=EST; length=523bp
CATGGTGGAATGGCCCCTGTCTTTTTGAAGCCCTTGATCGTATTGAGATA
ACTCCTCGAGATCCTAATGGTCCATTTAGGATGCCTATAATTGACAAATT
CAAGGACATGGGAACTGTTGTTATGGGGAAGGTGGAATCTGGTAGTGTAC
GGGAGGGGGATTCCTTGTTGGTCATGCCAAACAAGGCTCAAGTTAAAGTT
CTGGCCATATACTGTGATGACAATAGGGTTAGGCATGCAGGACCCGGTGA
AAATCTACGGATCAGATTATCTGGAATTGAAGAGGAAGATATACTATCTG
GTTTTGTCTTGTCAAGTGTTGCAAAACCAGTAGCCGCAGTCACTGAATTT
ATTGCCCAGTTGCAGATTCTTGAGTTGCTGGACAATGCAATTTTTACGGC
CGGCTACAAGGCTGTTTTACACATTCATGCTGTTGTCGAGGAATGTGAGA
TTGTTGAACTTGCTACATCAAATCGATCTGAAGACCAAGAAACCCATGAA
AAAGAAAGTTCTCTTTGGTAAGA
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