BQ622931

Overview
NameBQ622931
Unique NameBQ622931
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length523
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: HBS1L_HUMAN (HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.376e-15
Identity = 54/174 (31.03%), Postives = 83/174 (47.70%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFKDMGT--VVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL-ATSNRSEDQETHEKESSL 515
            W+ G CL E +D  +   R  + PFR+ + D FKD G+   + GK+E+G ++ GD LL MP      V  I   D  V  A  G+++ + L G++   I  G +      P+ A T F A++ I  +      T G+  +LH   V E   I  L +  N+S  + T +K   L
Sbjct:  464 WYKGLCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQGSGFCITGKIEAGYIQTGDRLLAMPPNETCTVKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPKVPIKACTRFRARILIFNI--EIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKFL 635          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_PYRHO (Elongation factor 1-alpha OS=Pyrococcus horikoshii GN=tuf PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.797e-15
Identity = 52/151 (34.44%), Postives = 78/151 (51.66%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMP------NKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAV-TEFIAQLQILELLDNAIFTAGYKAVLHIH 428
            W+NGP L EALD+I    +  + P R+PI D +  K +GTV +G+VE+G ++ GD ++  P         Q +V +I      ++ A PG+N+   + G+ + DI  G V     KP   V T+   + QI+ L      T GY  VLH H
Sbjct:  197 WYNGPTLIEALDQIPEPEKPIDKPLRIPIQDVYSIKGVGTVPVGRVETGKLKVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPLQEALPGDNIGFNVRGVSKNDIKRGDVAGHTDKPPTVVRTKDTFKAQIIVLNHPTAITVGYSPVLHAH 347          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_NATPD (Elongation factor 1-alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=tuf PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.797e-15
Identity = 46/152 (30.26%), Postives = 76/152 (50.00%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEI 452
            W++GP L EAL+ +       + P R+PI D +    +GTV +G+VE+G +  GD++   P+    +V  +      V  A PG+N+   + G+ ++DI  G V      P +    F AQ+ +++    ++ TAGY  V H H     C I
Sbjct:  201 WYDGPSLLEALNDLPEPQPPTDAPLRLPIQDVYTISGIGTVPVGRVETGILNTGDNVSFQPSDVSGEVKTVEMHHEEVPKAEPGDNVGFNVRGVGKDDIRRGDVCGPADDPPSVAETFQAQVVVMQ--HPSVITAGYTPVFHAHTAQVACTI 350          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_METS3 (Elongation factor 1-alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=tuf PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.797e-15
Identity = 48/155 (30.97%), Postives = 78/155 (50.32%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+ G  L +ALD +    +  + P R+PI D +    +GTV +G+VE+G +++G++++  P  A  +V +I         A PG+N+   + G+ + DI  G V   V    A   EF AQ+ +L+     + T GY  V H H     C  +EL
Sbjct:  191 WYKGDTLMQALDNLAAPEKPVSLPLRIPIQDVYSITGVGTVPVGRVETGVMKKGENVIFEPAGASGEVKSIEMHHETFETAEPGDNIGFNVRGVGKNDIRRGDVAGHVDDAPAVAKEFDAQIVVLQ--HPGVITVGYTPVFHCHTSQVACTFLEL 343          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_PYRKO (Elongation factor 1-alpha OS=Pyrococcus kodakaraensis GN=tuf PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.347e-15
Identity = 52/151 (34.44%), Postives = 77/151 (50.99%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMP------NKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAV-TEFIAQLQILELLDNAIFTAGYKAVLHIH 428
            W+NGP L EALD+I   P+  + P R+PI D +  K +GTV +G+VE+G +R GD ++  P         Q +V +I      ++ A PG+N+   + G+ + DI  G V      P   V  +   + QI+ L      T GY  VLH H
Sbjct:  197 WYNGPTLLEALDQIPEPPKPVDKPLRIPIQDVYSIKGVGTVPVGRVETGVLRVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPLQEAYPGDNIGFNVRGVGKNDIKRGDVAGHTTNPPTVVRPKDTFKAQIIVLNHPTAITVGYTPVLHAH 347          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAB (Elongation factor 1-alpha OS=Pyrococcus abyssi GN=tuf PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.347e-15
Identity = 52/151 (34.44%), Postives = 78/151 (51.66%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMP------NKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAV-TEFIAQLQILELLDNAIFTAGYKAVLHIH 428
            W+NGP L EALD+I    +  + P R+PI D +  K +GTV +G+VE+G ++ GD ++  P         Q +V +I      ++ A PG+N+   + G+ + DI  G V     KP   V T+   + QI+ L      T GY  VLH H
Sbjct:  197 WYNGPTLIEALDQIPEPEKPVDKPLRIPIQDVYSIKGVGTVPVGRVETGKLKVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPLQEALPGDNIGFNVRGVSKNDIKRGDVAGHPDKPPTVVRTKDTFKAQIIVLNHPTAITVGYSPVLHAH 347          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_THEON (Elongation factor 1-alpha OS=Thermococcus onnurineus (strain NA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.003e-15
Identity = 52/153 (33.99%), Postives = 78/153 (50.98%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMP------NKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAV-TEFIAQLQILELLDNAIFTAGYKAVLHIHAV 434
            W+NGP L EALD+I   P+  + P R+PI D +  K +GTV +G+VE+G +R GD ++  P         Q +V +I      ++ A PG+N+   + G+ + DI  G V      P   V  +   + QI+ L      T GY  VLH H +
Sbjct:  197 WYNGPTLIEALDQIPEPPKPTDKPLRIPIQDVYSIKGVGTVPVGRVETGVLRVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPMQEALPGDNIGFNVRGVGKNDIKRGDVAGHTNNPPTVVRPKDTFKAQIIVLNHPTAITIGYTPVLHAHTL 349          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_PYRWO (Elongation factor 1-alpha OS=Pyrococcus woesei GN=tuf PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.228e-15
Identity = 51/151 (33.77%), Postives = 76/151 (50.33%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMP------NKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAV-TEFIAQLQILELLDNAIFTAGYKAVLHIH 428
            W+NGP L EALD+I    +  + P R+PI D +  K +GTV +G+VE+G +R G+ ++  P         Q +V +I      +  A PG+N+   + G+ + DI  G V      P   V T+   + QI+ L      T GY  VLH H
Sbjct:  199 WYNGPTLIEALDQIPEPEKPVDKPLRIPIQDVYSIKGVGTVPVGRVETGKLRVGEVVIFEPASTIFHKPIQGEVKSIEMHHEPLEEALPGDNIGFNVRGVSKNDIKRGDVAGHTTNPPTVVRTKDTFKAQIIVLNHPTAITVGYSPVLHAH 349          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_PYRFU (Elongation factor 1-alpha OS=Pyrococcus furiosus GN=tuf PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.228e-15
Identity = 51/151 (33.77%), Postives = 76/151 (50.33%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMP------NKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAV-TEFIAQLQILELLDNAIFTAGYKAVLHIH 428
            W+NGP L EALD+I    +  + P R+PI D +  K +GTV +G+VE+G +R G+ ++  P         Q +V +I      +  A PG+N+   + G+ + DI  G V      P   V T+   + QI+ L      T GY  VLH H
Sbjct:  197 WYNGPTLIEALDQIPEPEKPVDKPLRIPIQDVYSIKGVGTVPVGRVETGKLRVGEVVIFEPASTIFHKPIQGEVKSIEMHHEPLEEALPGDNIGFNVRGVSKNDIKRGDVAGHTTNPPTVVRTKDTFKAQIIVLNHPTAITVGYSPVLHAH 347          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: HBS1L_BOVIN (HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.828e-15
Identity = 53/174 (30.46%), Postives = 82/174 (47.13%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFKDMGT--VVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL-ATSNRSEDQETHEKESSL 515
            W+ G CL E +D  +   R  + PFR+ + D FKD G+   V GK+E+G ++ GD LL MP         I   D  V  A  G+++ + L G++   I  G +     +P+   T F A++ I  +      T G+  +LH   V E   I  L +  N+S  + T +K   L
Sbjct:  466 WYKGLCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDRLLAMPPNETCTAKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCVPKEPIKVCTRFRARILIFNI--EIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLL 637          
The following BLAST results are available for this feature:
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
HBS1L_HUMAN1.376e-1531.03HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV... [more]
EF1A_PYRHO1.797e-1534.44Elongation factor 1-alpha OS=Pyrococcus horikoshii... [more]
EF1A_NATPD1.797e-1530.26Elongation factor 1-alpha OS=Natronomonas pharaoni... [more]
EF1A_METS31.797e-1530.97Elongation factor 1-alpha OS=Methanobrevibacter sm... [more]
EF1A_PYRKO2.347e-1534.44Elongation factor 1-alpha OS=Pyrococcus kodakaraen... [more]
EF1A_PYRAB2.347e-1534.44Elongation factor 1-alpha OS=Pyrococcus abyssi GN=... [more]
EF1A_THEON4.003e-1533.99Elongation factor 1-alpha OS=Thermococcus onnurine... [more]
EF1A_PYRWO5.228e-1533.77Elongation factor 1-alpha OS=Pyrococcus woesei GN=... [more]
EF1A_PYRFU5.228e-1533.77Elongation factor 1-alpha OS=Pyrococcus furiosus G... [more]
HBS1L_BOVIN6.828e-1530.46HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00022 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00022 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622931 ID=BQ622931; Name=BQ622931; organism=Citrus sinensis; type=EST; length=523bp
CATGGTGGAATGGCCCCTGTCTTTTTGAAGCCCTTGATCGTATTGAGATA
ACTCCTCGAGATCCTAATGGTCCATTTAGGATGCCTATAATTGACAAATT
CAAGGACATGGGAACTGTTGTTATGGGGAAGGTGGAATCTGGTAGTGTAC
GGGAGGGGGATTCCTTGTTGGTCATGCCAAACAAGGCTCAAGTTAAAGTT
CTGGCCATATACTGTGATGACAATAGGGTTAGGCATGCAGGACCCGGTGA
AAATCTACGGATCAGATTATCTGGAATTGAAGAGGAAGATATACTATCTG
GTTTTGTCTTGTCAAGTGTTGCAAAACCAGTAGCCGCAGTCACTGAATTT
ATTGCCCAGTTGCAGATTCTTGAGTTGCTGGACAATGCAATTTTTACGGC
CGGCTACAAGGCTGTTTTACACATTCATGCTGTTGTCGAGGAATGTGAGA
TTGTTGAACTTGCTACATCAAATCGATCTGAAGACCAAGAAACCCATGAA
AAAGAAAGTTCTCTTTGGTAAGA
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