BQ622931

Overview
NameBQ622931
Unique NameBQ622931
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length523
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_THECE (Elongation factor 1-alpha OS=Thermococcus celer GN=tuf PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.828e-15
Identity = 51/153 (33.33%), Postives = 78/153 (50.98%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMP------NKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAV-TEFIAQLQILELLDNAIFTAGYKAVLHIHAV 434
            W+NGP L EALD++   P+  + P R+PI D +  K +GTV +G+VE+G +R GD ++  P         Q +V +I      ++ A PG+N+   + G+ + DI  G V      P   V  +   + QI+ L      T GY  VLH H +
Sbjct:  197 WYNGPTLIEALDQMPEPPKPTDKPLRIPIQDVYSIKGVGTVPVGRVETGVLRVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPMQEALPGDNIGFNVRGVGKNDIKRGDVAGHTNNPPTVVRPKDTFKAQIIVLNHPTAITVGYTPVLHAHTL 349          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_PORYE (Elongation factor 1-alpha OS=Porphyra yezoensis PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.165e-14
Identity = 49/156 (31.41%), Postives = 76/156 (48.72%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVL-SSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+ GPCL EALD  +   R  + P R+P+ D +K   +GTV +G+VE+G ++ G  +   P+    +V ++      +  AGPG+N+   +  +  +D+  G+V   S   P      F AQ+ IL         AGY  VL  H     C+  EL
Sbjct:  214 WYKGPCLLEALDNCDPPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGLIKPGMVVTFAPSGLSTEVKSVEMHHEALPQAGPGDNVGFNVKNVSVKDLKRGYVCGDSKNDPPKGCASFNAQVIILN--HPGEIHAGYAPVLDCHTAHIACKFSEL 367          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1AC_PORPU (Elongation factor 1-alpha C OS=Porphyra purpurea GN=TEF-C PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.165e-14
Identity = 49/156 (31.41%), Postives = 76/156 (48.72%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVL-SSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+ GPCL EALD  +   R  + P R+P+ D +K   +GTV +G+VE+G ++ G  +   P+    +V ++      +  AGPG+N+   +  +  +D+  G+V   S   P      F AQ+ IL         AGY  VL  H     C+  EL
Sbjct:  214 WYKGPCLLEALDACDPPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPSGLSTEVKSVEMHHEALTQAGPGDNVGFNVKNVSVKDLKRGYVCGDSKNDPPKGCASFNAQVIILN--HPGEIHAGYAPVLDCHTAHIACKFSEL 367          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_THEGJ (Elongation factor 1-alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.521e-14
Identity = 51/151 (33.77%), Postives = 76/151 (50.33%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMP------NKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAV-TEFIAQLQILELLDNAIFTAGYKAVLHIH 428
            W+ GP L EALD+I   P+  + P R+PI D +  K +GTV +G+VE+G +R GD ++  P         Q +V +I      ++ A PG+N+   + G+ + DI  G V      P   V  +   + QI+ L      T GY  VLH H
Sbjct:  197 WYKGPTLIEALDQIPEPPKPIDKPLRIPIQDVYSIKGVGTVPVGRVETGVLRVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPLQEAYPGDNIGFNVRGVGKNDIKRGDVAGHTTNPPTVVRPKDTFKAQIIVLNHPTAITVGYTPVLHAH 347          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_HALMA (Elongation factor 1-alpha OS=Haloarcula marismortui GN=tuf PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.987e-14
Identity = 43/152 (28.29%), Postives = 74/152 (48.68%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEI 452
            W++G  L EAL+ +       + P R+PI D +    +GTV +G+VE+G +  GD++   P+    +V  +      V  A PG+N+   + G+ ++DI  G V      P +    F AQ+ +++    ++ T GY  V H H     C +
Sbjct:  200 WYDGEILLEALNELPAPEPPTDAPLRLPIQDVYTISGIGTVPVGRVETGILNTGDNVSFQPSDVSGEVKTVEMHHEEVPKAEPGDNVGFNVRGVGKDDIRRGDVCGPADDPPSVAETFQAQIVVMQ--HPSVITEGYTPVFHAHTAQVACTV 349          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.595e-14
Identity = 48/152 (31.58%), Postives = 75/152 (49.34%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK-PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECE 449
            W+ GP L EALD +E   R  + P R+P+ D +K   +GTV +G+VE+G ++ G S+   PNK   +  ++     ++  A PG+N+   + G+  +DI  G V S     P      F +Q+ I+         AGY  VL  H     C+
Sbjct:  211 WYKGPILVEALDALEPPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMSIQFAPNKVIAECKSVEMHHEQLPEAVPGDNVGFNIKGVSVKDIRRGNVASDAKNDPAKEAATFYSQVIIMN--HPGQIQAGYTPVLDCHTAHIACK 360          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_GIALA (Elongation factor 1-alpha (Fragment) OS=Giardia lamblia GN=TEF1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.595e-14
Identity = 43/152 (28.29%), Postives = 75/152 (49.34%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK-PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECE 449
            W+ GPCL +A+D ++   R  + P R+PI D +K   +GTV  G+VE+G +  G  ++  P     +V ++      ++ AGPG+N+   + G+  +D+  G+V+  V   P      F AQ+ ++          GY  V+  H     C+
Sbjct:  191 WYEGPCLIDAIDGLKAPKRPTDKPLRLPIQDVYKISGVGTVPAGRVETGELAPGMKVVFAPTSQVSEVKSVEMHHEELKKAGPGDNVGFNVRGLAVKDLKKGYVVGDVTNDPPVGCKSFTAQVIVMN--HPKKIQPGYTPVIDCHTAHIACQ 340          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 9.860e-14
Identity = 51/175 (29.14%), Postives = 83/175 (47.43%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK-PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELATS-NRSEDQETHEKESSL 515
            W+ GP L EALD +E   R  + P R+P+ D +K   +GTV +G+VE+G ++ GD +   P     +V +I     ++  A PG+N+   +  +  +DI  G V  +    P     +F AQ+ IL          GY  VL  H     C+  E+ +  +R   +E  +   S+
Sbjct:  210 WYKGPTLLEALDMLEPPVRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVMKPGDVVTFAPANVTTEVKSIEMHHEQLAEATPGDNVGFNVKNVSVKDIRRGNVCGNTKNDPPKEAADFTAQVIILN--HPGQIGNGYAPVLDCHTSHIACKFAEIESKIDRRSGKELEKAPKSI 382          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_THESM (Elongation factor 1-alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.860e-14
Identity = 50/151 (33.11%), Postives = 74/151 (49.01%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMP------NKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAV-TEFIAQLQILELLDNAIFTAGYKAVLHIH 428
            W+NGP L EALD+I    +  + P R+PI D +  K +GTV +G+VE+G ++ GD ++  P         Q +V +I      +  A PG+N+   + G+ + DI  G V      P   V      + QI+ L      T GY  VLH H
Sbjct:  197 WYNGPTLIEALDQIPEPEKPTDKPLRIPIQDVYSIKGVGTVPVGRVETGVLKVGDVIIFEPASTIFHKPIQGEVKSIEMHHESMPEALPGDNIGFNVRGVGKNDIKRGDVAGHTTNPPTVVRPRDTFKAQIIVLNHPTAITIGYTPVLHAH 347          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_IGNH4 (Elongation factor 1-alpha OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=tuf PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 45/157 (28.66%), Postives = 76/157 (48.41%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIE--ITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+ GP L EALD ++     +    P R+PI D +    +GTV +G+VE+G ++ GD ++ MP     +V +I     ++  A PG+N+   + G+ + DI  G V      P     +F A  ++  +   +    GY  V+H H       I+E+
Sbjct:  211 WYKGPTLVEALDNLKPPSVEKWAKLPLRIPIQDVYSITGVGTVPVGRVETGVLKVGDKVVFMPPGVGGEVRSIEMHHEKIEQAMPGDNIGFNVRGVSKNDIKRGDVAGHPENPPTVADQFTA--RVFVIWHPSAIAVGYTPVIHAHTASVASRIIEI 365          
The following BLAST results are available for this feature:
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
EF1A_THECE6.828e-1533.33Elongation factor 1-alpha OS=Thermococcus celer GN... [more]
EF1A_PORYE1.165e-1431.41Elongation factor 1-alpha OS=Porphyra yezoensis PE... [more]
EF1AC_PORPU1.165e-1431.41Elongation factor 1-alpha C OS=Porphyra purpurea G... [more]
EF1A_THEGJ1.521e-1433.77Elongation factor 1-alpha OS=Thermococcus gammatol... [more]
EF1A_HALMA1.987e-1428.29Elongation factor 1-alpha OS=Haloarcula marismortu... [more]
EF1A_TETPY2.595e-1431.58Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A_GIALA2.595e-1428.29Elongation factor 1-alpha (Fragment) OS=Giardia la... [more]
EF1A_TRYBB9.860e-1429.14Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]
EF1A_THESM9.860e-1433.11Elongation factor 1-alpha OS=Thermococcus sibiricu... [more]
EF1A_IGNH41.288e-1328.66Elongation factor 1-alpha OS=Ignicoccus hospitalis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00022 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00022 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622931 ID=BQ622931; Name=BQ622931; organism=Citrus sinensis; type=EST; length=523bp
CATGGTGGAATGGCCCCTGTCTTTTTGAAGCCCTTGATCGTATTGAGATA
ACTCCTCGAGATCCTAATGGTCCATTTAGGATGCCTATAATTGACAAATT
CAAGGACATGGGAACTGTTGTTATGGGGAAGGTGGAATCTGGTAGTGTAC
GGGAGGGGGATTCCTTGTTGGTCATGCCAAACAAGGCTCAAGTTAAAGTT
CTGGCCATATACTGTGATGACAATAGGGTTAGGCATGCAGGACCCGGTGA
AAATCTACGGATCAGATTATCTGGAATTGAAGAGGAAGATATACTATCTG
GTTTTGTCTTGTCAAGTGTTGCAAAACCAGTAGCCGCAGTCACTGAATTT
ATTGCCCAGTTGCAGATTCTTGAGTTGCTGGACAATGCAATTTTTACGGC
CGGCTACAAGGCTGTTTTACACATTCATGCTGTTGTCGAGGAATGTGAGA
TTGTTGAACTTGCTACATCAAATCGATCTGAAGACCAAGAAACCCATGAA
AAAGAAAGTTCTCTTTGGTAAGA
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