BQ622933

Overview
NameBQ622933
Unique NameBQ622933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622933_ssr567 microsatellite BQ622933_ssr567:567..578. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4037 contig Csv1_Contig4037:93..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.718e-11
Identity = 43/116 (37.07%), Postives = 60/116 (51.72%), Query Frame = 3
Query:    3 IGNMYRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGP 350
            IG +  L  L L  NQ++GPIP  LG++              G+IP++L   T +  L LSRN L G +P +    S    LDLS+NNL GP P ++S+  Y     + +  LCGP
Sbjct:   99 IGELTHLHTLLLQNNQLTGPIPSELGQLSELETLDLSGNRFSGEIPASLGFLTHLNYLRLSRNLLSGQVPHLVAGLSGLSFLDLSFNNLSGPTP-NISAKDY---RIVGNAFLCGP 210          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: RPK1_IPONI (Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.718e-11
Identity = 40/119 (33.61%), Postives = 57/119 (47.90%), Query Frame = 3
Query:    3 IGNMYRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPV 359
            +GN   L  +DLS+N  +G IPD LG +              G  P +LLS   +  +  + N L G+IP   G+ S    L L  N   GP+P SL +   +  L L+ N+L G +PV
Sbjct:  112 LGNCSLLEHIDLSSNSFTGNIPDTLGALQNLRNLSLFFNSLIGPFPESLLSIPHLETVYFTGNGLNGSIPSNIGNMSELTTLWLDDNQFSGPVPSSLGNITTLQELYLNDNNLVGTLPV 230          

HSP 2 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 44/134 (32.84%), Postives = 62/134 (46.27%), Query Frame = 3
Query:    3 IGNMYRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSN 404
            +GN+  +  + LS+NQ+SG IP  LG +              G +PS L +   +  L+ S N L G+IP   GS +    L L  N+  G IP SL  S  + +L L  N L G IP       L + +  SN
Sbjct:  519 LGNLKNVTAIYLSSNQLSGSIPPELGSLVKLEHLNLSHNILKGILPSELSNCHKLSELDASHNLLNGSIPSTLGSLTELTKLSLGENSFSGGIPTSLFQSNKLLNLQLGGNLLAGDIPPVGALQALRSLNLSSN 652          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: Y5720_ARATH (Probable inactive receptor kinase At5g67200 OS=Arabidopsis thaliana GN=At5g67200 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.244e-11
Identity = 47/146 (32.19%), Postives = 71/146 (48.63%), Query Frame = 3
Query:    3 IGNMYRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCGNPL-RTC 437
            +  + +L  L L  N + GPIPD L  +              G  P ++LS   + IL++S N   G+IP    +     +L+L +N   G +P SL+ S ++   ++S N+L G IPV       +ASSF SN  LCG  + R C
Sbjct:   93 LSRLDQLRVLSLENNSLFGPIPD-LSHLVNLKSLFLSRNQFSGAFPPSILSLHRLMILSISHNNFSGSIPSEINALDRLTSLNLDFNRFNGTLP-SLNQS-FLTSFNVSGNNLTGVIPVTPTLSRFDASSFRSNPGLCGEIINRAC 235          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.244e-11
Identity = 42/118 (35.59%), Postives = 59/118 (50.00%), Query Frame = 3
Query:    9 NMYR-LADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPV 359
            NM+  L  +D S N I G IP  L                 G IP +L S   + +++L+ N L G IPDVF      + +DLS NNL GP+P S+ + + +  L L +NHL G + V
Sbjct:   97 NMFTSLKAMDFSNNHIGGSIPSTLP--VSLQNLFLSGNNFTGTIPESLSSLKSLSVMSLNNNLLSGKIPDVFQDLGLMINIDLSSNNLSGPLPPSMQNLSTLTSLLLQNNHLSGELDV 212          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: PEPR2_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.931e-11
Identity = 41/118 (34.75%), Postives = 57/118 (48.31%), Query Frame = 3
Query:    9 NMYRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVG 362
            N  +L  LDLS N   G +P  +G                G IPS++     + +++LS N L GNIP   G+ S    L L+ N L+G IP +LS    +  L+L  N L G IP+G
Sbjct:  242 NCKKLVSLDLSFNDFQGGVPPEIGNCSSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDLSDNRLSGNIPQELGNCSSLETLKLNDNQLQGEIPPALSKLKKLQSLELFFNKLSGEIPIG 359          

HSP 2 Score: 67.3958 bits (163), Expect = 6.530e-11
Identity = 46/139 (33.09%), Postives = 61/139 (43.88%), Query Frame = 3
Query:    3 IGNMYRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCG 419
            IG +  L  LDLS N  SG +P  LG                G++P    S   +  L L RN L G IP   G     + L +SYNNL G IP  L + + + +L L++N L G +P            F SN+ L G
Sbjct:   96 IGELKSLVTLDLSLNSFSGLLPSTLGNCTSLEYLDLSNNDFSGEVPDIFGSLQNLTFLYLDRNNLSGLIPASVGGLIELVDLRMSYNNLSGTIPELLGNCSKLEYLALNNNKLNGSLPASLYLLENLGELFVSNNSLGG 234          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: HSL2_ARATH (LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana GN=HSL2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.828e-11
Identity = 50/139 (35.97%), Postives = 63/139 (45.32%), Query Frame = 3
Query:   30 LDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCG---NPLRTC 437
            +DLS N   G IP  + K+              G+IPS++ S T +  LNLS N L G IP   G       LDLS N L G IP  L     +   ++S N L G IP G   D +   SF  N  LC    +P+R C
Sbjct:  488 IDLSRNSFLGSIPSCINKLKNLERVEMQENMLDGEIPSSVSSCTELTELNLSNNRLRGGIPPELGDLPVLNYLDLSNNQLTGEIPAEL-LRLKLNQFNVSDNKLYGKIPSGFQQD-IFRPSFLGNPNLCAPNLDPIRPC 624          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: PGIP1_ARATH (Polygalacturonase inhibitor 1 OS=Arabidopsis thaliana GN=PGIP1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 48/137 (35.04%), Postives = 66/137 (48.18%), Query Frame = 3
Query:   27 DLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCGNPLRTC 437
            DL LS NQ+SGPIP  LG +              G       SN     ++LSRN    +I  V   K+  + LDL++N + G IP   +  A +   ++S+N LCG IP G      ++ S+  N CLCG PL  C
Sbjct:  196 DLRLSHNQLSGPIPKSLGNIDFNRIDLSRNKLQ-GDASMLFGSNKTTWSIDLSRNMFQFDISKVDIPKTLGI-LDLNHNGITGNIPVQWTE-APLQFFNVSYNKLCGHIPTGGKLQTFDSYSYFHNKCLCGAPLEIC 329          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: Y1719_ARATH (Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.530e-11
Identity = 49/141 (34.75%), Postives = 62/141 (43.97%), Query Frame = 3
Query:   18 RLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGI-LNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCGNPLRTC 437
            R+  L L + Q++G IP+ L                 G IPS + S     + L+LS N LGG+IP       +  AL LS N L G IP  LS    +  L L+ N L G IP  S         F  N+ LCG PL  C
Sbjct:   73 RIISLQLQSMQLAGEIPESLKLCRSLQSLDLSGNDLSGSIPSQICSWLPYLVTLDLSGNKLGGSIPTQIVECKFLNALILSDNKLSGSIPSQLSRLDRLRRLSLAGNDLSGTIP--SELARFGGDDFSGNNGLCGKPLSRC 211          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: Y5148_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g61480 OS=Arabidopsis thaliana GN=At5g61480 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.528e-11
Identity = 49/141 (34.75%), Postives = 69/141 (48.94%), Query Frame = 3
Query:    9 NMYRLADLDL---STNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCGN 422
            N+++  +L +   S + + G IP+ +G                G IP  +     +  LNLS+N L G IP    +      +DLS+N L G IP    SS  I   ++S+N L GPIP GS F HL  S F SN+ LCG+
Sbjct:  484 NIWKAPNLQIFSASFSNLIGEIPNYVG-CKSFYRIELQGNSLNGTIPWDIGHCEKLLCLNLSQNHLNGIIPWEISTLPSIADVDLSHNLLTGTIPSDFGSSKTITTFNVSYNQLIGPIPSGS-FAHLNPSFFSSNEGLCGD 622          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.528e-11
Identity = 44/130 (33.85%), Postives = 62/130 (47.69%), Query Frame = 3
Query:   30 LDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCG 419
            +DL    +SG +   LG++              G +PS L + T +  L+L  N+  G IPD  G       L L+ N+L GPIP SL++   +  LDLS+N L G +P    F      SF +N  LCG
Sbjct:   77 VDLGNADLSGQLVPQLGQLKNLQYLELYSNNITGPVPSDLGNLTNLVSLDLYLNSFTGPIPDSLGKLFKLRFLRLNNNSLTGPIPMSLTNIMTLQVLDLSNNRLSGSVPDNGSFSLFTPISFANNLDLCG 206          
The following BLAST results are available for this feature:
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
Y5457_ARATH1.718e-1137.07Probable LRR receptor-like serine/threonine-protei... [more]
RPK1_IPONI1.718e-1133.61Receptor-like protein kinase OS=Ipomoea nil GN=INR... [more]
Y5720_ARATH2.244e-1132.19Probable inactive receptor kinase At5g67200 OS=Ara... [more]
SRF1_ARATH2.244e-1135.59Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]
PEPR2_ARATH2.931e-1134.75Leucine-rich repeat receptor-like protein kinase P... [more]
HSL2_ARATH3.828e-1135.97LRR receptor-like serine/threonine-protein kinase ... [more]
PGIP1_ARATH5.000e-1135.04Polygalacturonase inhibitor 1 OS=Arabidopsis thali... [more]
Y1719_ARATH6.530e-1134.75Probable inactive receptor kinase At1g27190 OS=Ara... [more]
Y5148_ARATH8.528e-1134.75Probable leucine-rich repeat receptor-like protein... [more]
SERK2_ARATH8.528e-1133.85Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00024 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00024 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622933 ID=BQ622933; Name=BQ622933; organism=Citrus sinensis; type=EST; length=611bp
CTATCGGGAACATGTATCGGCTTGCCGATTTGGATTTGTCCACGAATCAA
ATATCGGGTCCGATACCGGACATCTTGGGCAAAATGCTAGTCTTGTCAAC
TCTTAACTTGGATAGCAACTTGTTATCCGGTAAAATACCGTCCACGCTTC
TGAGTAATACCGGTATGGGAATCTTAAACTTGAGCCGAAATGCTCTAGGG
GGAAATATACCGGACGTTTTCGGGTCAAAATCCTACTTCATGGCTTTAGA
TTTGTCGTACAACAATTTGAAAGGTCCGATTCCCGGTTCGTTATCATCAT
CGGCATATATCGGGCACTTGGATTTGAGCCACAATCATCTCTGCGGACCC
ATTCCCGTCGGATCACCGTTCGATCACCTTGAAGCGTCGTCGTTCGACAG
CAACGATTGCTTGTGCGGCAACCCATTGAGGACTTGCTGATGTTATTGAT
TCCGATTATTGTGTCCGAAAAATCGGGTTAATTATTGGTTAGTTACATGT
TGTAATAGTGAATGTAAGCGTTTCTATGAATATGTTGTATGCTTATCATC
AGTTTATGGTATATATATTAATTAATTATATGCTTGAACTAAAAAAAAAA
AAAAAAAAAAA
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