BQ622949

Overview
NameBQ622949
Unique NameBQ622949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length467
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig444 contig Csv1_Contig444:71..537. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622949 vs. ExPASy Swiss-Prot
Match: PLAS_PHAVU (Plastocyanin OS=Phaseolus vulgaris GN=PETE PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.087e-32
Identity = 67/83 (80.72%), Postives = 70/83 (84.34%), Query Frame = 2
Query:  218 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFY 466
            +EVLLG  DGSL FVPS FSV SGEKIVFKNNAGFPHNVVFDEDEIP+GVD  KISM  E+LLN PGETY VTL  KGTYSFY
Sbjct:    1 LEVLLGSGDGSLVFVPSEFSVPSGEKIVFKNNAGFPHNVVFDEDEIPAGVDAVKISMPEEELLNAPGETYVVTLDTKGTYSFY 83          
BLAST of BQ622949 vs. ExPASy Swiss-Prot
Match: PLAS_VICFA (Plastocyanin OS=Vicia faba GN=PETE PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.352e-31
Identity = 64/83 (77.11%), Postives = 70/83 (84.34%), Query Frame = 2
Query:  218 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFY 466
            +EVLLG  DG LAFVP+SF VS+G+ IVFKNNAGFPHNVVFDEDEIPSGVD +KISM  EDLLN PGETY+V L  KGTY FY
Sbjct:    1 VEVLLGASDGGLAFVPNSFEVSAGDTIVFKNNAGFPHNVVFDEDEIPSGVDAAKISMPEEDLLNAPGETYSVKLDAKGTYKFY 83          
BLAST of BQ622949 vs. ExPASy Swiss-Prot
Match: PLAS_GINBI (Plastocyanin OS=Ginkgo biloba GN=PETE PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.820e-29
Identity = 57/83 (68.67%), Postives = 69/83 (83.13%), Query Frame = 2
Query:  218 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFY 466
            +EVL+GG  G LAF+P+   V++GE+IVFKNNAGFPHNV+FDED +P+GVDVS ISMS EDLLN PGETY V L +KGTY F+
Sbjct:    1 VEVLMGGSGGELAFIPNELQVNAGEQIVFKNNAGFPHNVIFDEDAVPAGVDVSSISMSEEDLLNAPGETYVVKLDKKGTYRFF 83          
BLAST of BQ622949 vs. ExPASy Swiss-Prot
Match: PLAS_DAUCA (Plastocyanin OS=Daucus carota GN=PETE PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.072e-28
Identity = 60/82 (73.17%), Postives = 68/82 (82.93%), Query Frame = 2
Query:  221 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFY 466
            EV LG DDG+L F PSSFSV+ GE I FKNNAGFPHN+VFDEDE+P+GVDVSKIS   ED L+G GE++ VTLTEKGTY FY
Sbjct:    2 EVKLGADDGALVFSPSSFSVAKGEGISFKNNAGFPHNIVFDEDEVPAGVDVSKISQ--EDYLDGAGESFTVTLTEKGTYKFY 81          
BLAST of BQ622949 vs. ExPASy Swiss-Prot
Match: PLAS_PETCR (Plastocyanin A/B OS=Petroselinum crispum GN=PETE PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.547e-27
Identity = 58/82 (70.73%), Postives = 66/82 (80.49%), Query Frame = 2
Query:  221 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFY 466
            EV LG DDG L F PSSF+V++GEKI FKNNAGFPHN+VFDEDE+P+GV+  KIS    + LNG GETY VTLTEKGTY FY
Sbjct:    2 EVKLGSDDGGLVFSPSSFTVAAGEKITFKNNAGFPHNIVFDEDEVPAGVNAEKISQ--PEYLNGAGETYEVTLTEKGTYKFY 81          
BLAST of BQ622949 vs. ExPASy Swiss-Prot
Match: PLAS_ORYSJ (Plastocyanin, chloroplastic OS=Oryza sativa subsp. japonica GN=PETE PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 8.491e-26
Identity = 57/82 (69.51%), Postives = 64/82 (78.05%), Query Frame = 2
Query:  221 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFY 466
            EVLLG + G L F P+ F+V SGE I FKNNAGFPHNVVFDED +PSGVDVSKIS   E+ LN PGET++VTLT  GTY FY
Sbjct:   59 EVLLGANGGVLVFEPNDFTVKSGETITFKNNAGFPHNVVFDEDAVPSGVDVSKISQ--EEYLNAPGETFSVTLTVPGTYGFY 138          
BLAST of BQ622949 vs. ExPASy Swiss-Prot
Match: PLAS_ORYSI (Plastocyanin, chloroplastic OS=Oryza sativa subsp. indica GN=PETE PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 8.491e-26
Identity = 57/82 (69.51%), Postives = 64/82 (78.05%), Query Frame = 2
Query:  221 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFY 466
            EVLLG + G L F P+ F+V SGE I FKNNAGFPHNVVFDED +PSGVDVSKIS   E+ LN PGET++VTLT  GTY FY
Sbjct:   59 EVLLGANGGVLVFEPNDFTVKSGETITFKNNAGFPHNVVFDEDAVPSGVDVSKISQ--EEYLNAPGETFSVTLTVPGTYGFY 138          
BLAST of BQ622949 vs. ExPASy Swiss-Prot
Match: PLAS_HORVU (Plastocyanin, chloroplastic OS=Hordeum vulgare GN=PETE PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.091e-24
Identity = 54/82 (65.85%), Postives = 63/82 (76.83%), Query Frame = 2
Query:  221 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFY 466
            +VLLG + G L F P+ FSV +GE I FKNNAG+PHNVVFDED +PSGVDVSKIS   E+ L  PGET++VTLT  GTY FY
Sbjct:   60 DVLLGANGGVLVFEPNDFSVKAGETITFKNNAGYPHNVVFDEDAVPSGVDVSKISQ--EEYLTAPGETFSVTLTVPGTYGFY 139          
BLAST of BQ622949 vs. ExPASy Swiss-Prot
Match: PLAS_PHYPA (Plastocyanin, chloroplastic OS=Physcomitrella patens GN=PETE PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.958e-22
Identity = 58/139 (41.73%), Postives = 75/139 (53.96%), Query Frame = 2
Query:   56 GLKAG--ATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFY 466
            GLKA   A PAR+  +++   A  V   +    LK VG                    V +GGDDG+L F P   SV++GE + F NN GFPHNVVFDED +P+GV    I  + ED LNGP E++++T    GTY FY
Sbjct:   16 GLKAETKAAPARLSSTSVVRMAPVVRASASSDALKTVGKALLAASSSLLLVASANAATVKMGGDDGALGFYPKDISVAAGESVTFVNNKGFPHNVVFDEDAVPAGVKTEDI--NHEDYLNGPNESFSITFKTPGTYEFY 152          
BLAST of BQ622949 vs. ExPASy Swiss-Prot
Match: PLAS_ENTPR (Plastocyanin OS=Enteromorpha prolifera GN=PETE PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 8.224e-21
Identity = 49/81 (60.49%), Postives = 57/81 (70.37%), Query Frame = 2
Query:  224 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFY 466
            V LGGDDGSLAFVP++ +V +GE I F NNAGFPHN+VFDED +P+GVD   I  S ED LN  G+T    LT  GTY  Y
Sbjct:    4 VKLGGDDGSLAFVPNNITVGAGESIEFINNAGFPHNIVFDEDAVPAGVDADAI--SAEDYLNSKGQTVVRKLTTPGTYGVY 82          
The following BLAST results are available for this feature:
BLAST of BQ622949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PLAS_PHAVU2.087e-3280.72Plastocyanin OS=Phaseolus vulgaris GN=PETE PE=1 SV... [more]
PLAS_VICFA1.352e-3177.11Plastocyanin OS=Vicia faba GN=PETE PE=1 SV=1[more]
PLAS_GINBI2.820e-2968.67Plastocyanin OS=Ginkgo biloba GN=PETE PE=1 SV=1[more]
PLAS_DAUCA4.072e-2873.17Plastocyanin OS=Daucus carota GN=PETE PE=1 SV=1[more]
PLAS_PETCR1.547e-2770.73Plastocyanin A/B OS=Petroselinum crispum GN=PETE P... [more]
PLAS_ORYSJ8.491e-2669.51Plastocyanin, chloroplastic OS=Oryza sativa subsp.... [more]
PLAS_ORYSI8.491e-2669.51Plastocyanin, chloroplastic OS=Oryza sativa subsp.... [more]
PLAS_HORVU2.091e-2465.85Plastocyanin, chloroplastic OS=Hordeum vulgare GN=... [more]
PLAS_PHYPA1.958e-2241.73Plastocyanin, chloroplastic OS=Physcomitrella pate... [more]
PLAS_ENTPR8.224e-2160.49Plastocyanin OS=Enteromorpha prolifera GN=PETE PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00040 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00040 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622949 ID=BQ622949; Name=BQ622949; organism=Citrus sinensis; type=EST; length=467bp
TACAGTTACAATGGCTACTGTCACCTCTGCAGCTGTCACCGTCCCAACTT
TCACCGGCCTTAAAGCCGGTGCAACACCAGCCAGAGTTGTTGGTTCCACC
ATGAAGGCCTCAGCCTCTGCTGTCCCAAAGCTCAGCATCAAGGCCACACT
CAAAGATGTTGGAGTGGCCGTTGCGGCCACAGCTGCCAGCGCAATGCTTG
CTAGCAATGCCATGGCCATTGAGGTTTTGCTTGGTGGTGATGATGGGTCC
TTGGCTTTTGTTCCAAGCTCTTTCTCTGTCAGCTCCGGTGAAAAGATTGT
GTTCAAGAACAATGCTGGGTTCCCACACAACGTTGTTTTCGATGAAGATG
AGATTCCGAGTGGTGTTGATGTTTCAAAAATCTCCATGTCTACAGAAGAC
CTTCTCAATGGTCCTGGAGAGACTTATGCTGTTACTCTGACTGAAAAAGG
CACTTACTCTTTTTACT
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