BQ622950

Overview
NameBQ622950
Unique NameBQ622950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4784 contig Csv1_Contig4784:354..882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.147e-19
Identity = 42/88 (47.73%), Postives = 61/88 (69.32%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 264
            G F +S+ F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   ++ +L SI SLL +PNP+ P     A +Y+ +R +YE
Sbjct:   51 GTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYE 138          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.805e-19
Identity = 43/99 (43.43%), Postives = 62/99 (62.63%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 282
            G F + + F  DYP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  +++Y     ET  +SW
Sbjct:   51 GTFRLLLEFDEDYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYIKRVKETVEKSW 149          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.663e-19
Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = 1
Query:    7 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT--------DRAKYETTAR 276
            F +S+ FP DYP+KPP V F T+ FHPN+++NG+ICLDILK++WSP   +  +L+SI SLL +PN + PL    A ++          D+   E T+R
Sbjct:   55 FKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLWSNQDEYKKVLDKRYQEATSR 152          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.663e-19
Identity = 44/101 (43.56%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWTQ 288
            G F + + F   YP KPP V F +++FHPN+ ++G +CLDIL+ +WSP   +S +L SI SLL DPN   P   E A++YK  R++Y     ET   SW +
Sbjct:   51 GTFRLILQFDEQYPNKPPSVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQYIKRVRETVENSWNE 151          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.248e-19
Identity = 43/99 (43.43%), Postives = 61/99 (61.62%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 282
            G F + +HF   YP KPP V F +++FHPN+   G +CLDIL+ +WSP   ++ +L SI SLL DPN   P   E +++YK +R +Y     ET  +SW
Sbjct:   51 GTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRETVEKSW 149          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.160e-19
Identity = 42/99 (42.42%), Postives = 62/99 (62.63%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 282
            G F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  +++Y     ET  +SW
Sbjct:   51 GTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.160e-19
Identity = 42/99 (42.42%), Postives = 62/99 (62.63%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 282
            G F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  +++Y     ET  +SW
Sbjct:   51 GTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.066e-18
Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWTQ 288
            G F + +HF   YP KPP V F +++FHPN+   G +CLDIL+ +WSP   ++ +L SI SLL DPN   P   E +++Y+ +R +Y     ET  +SW +
Sbjct:   51 GTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRETVEKSWEE 151          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UBC84_DROME (Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophila melanogaster GN=Ubc84D PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.392e-18
Identity = 37/100 (37.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 297
            G F + I+FPP YPF PPK+ F+TK++HPN++  G +CL I+  + W P     +VL ++ +++ +P P+ PL  ++A  +  +  K+  TA  +T+K A
Sbjct:   49 GAFRIEINFPPQYPFMPPKILFKTKIYHPNVDEKGEVCLPIISTDNWKPTTRTEQVLQALVAIVHNPEPEHPLRSDLAEEFVREHKKFMKTAEEFTKKNA 148          
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.818e-18
Identity = 43/99 (43.43%), Postives = 62/99 (62.63%), Query Frame = 1
Query:    1 GVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 282
            G F + + F   YP KPP+V F +++FHPN+ + G +CLDIL+ +WSP   ++ VL SI SLL DPN   P   E +++YK +R +Y     ET  +SW
Sbjct:   51 GTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRETVEKSW 149          
The following BLAST results are available for this feature:
BLAST of BQ622950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
UBC1_CAEEL2.147e-1947.73Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBC2_CANGA2.805e-1943.43Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBE2C_DICDI3.663e-1944.90Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]
UBC2_DEBHA3.663e-1943.56Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBC2_ASPFU6.248e-1943.43Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC2_YEAST8.160e-1942.42Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_ASHGO8.160e-1942.42Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]
UBC2_EMENI1.066e-1841.58Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC84_DROME1.392e-1837.00Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophi... [more]
UBC2_NECHA1.818e-1843.43Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00041 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00041 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622950 ID=BQ622950; Name=BQ622950; organism=Citrus sinensis; type=EST; length=529bp
GGTGTATTTCTTGTATCCATTCATTTCCCACCTGATTATCCATTCAAGCC
ACCGAAGGTGGCCTTCCGTACTAAGGTTTTCCACCCTAACATCAACAGCA
ATGGTAGCATCTGTCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTG
ACAATATCCAAGGTACTTCTGTCAATTTGCTCACTACTTACTGATCCGAA
CCCAGATGACCCACTTGTGCCTGAGATTGCTCACATGTACAAGACTGACA
GAGCCAAATATGAGACTACTGCTCGATCCTGGACCCAGAAGTATGCCATG
GGTTAAGAGGGGCTAGGCTGTACGCCCCTGAGAACATTAATGGCTTGTGG
TCCTATTAGTAAATAATAGAAATAAGTTTGTTTCAGATATTAAAAGACGA
TATTTGGTTTTGTTTACTAAGTTGTTAAAAGGTTTTATGTGGGGTTACTT
TCCAATTTAGCATTGTCCTTCAATACTTAAATTATAATTTACTGCAAAAT
GGAGCTGCCTTTGCCTTTAAAAAAAAAAA
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