BQ622952

Overview
NameBQ622952
Unique NameBQ622952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10231 contig Csv1_Contig10231:504..1119. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: ICK_HUMAN (Serine/threonine-protein kinase ICK OS=Homo sapiens GN=ICK PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 44/145 (30.34%), Postives = 76/145 (52.41%), Query Frame = 2
Query:   17 VSTRHYRAPEVIL-GLGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 448
            VSTR YRAPEV+L    ++ P D+W+VGCI+ E+ +   LF     ++ +  + +VLG                      + DWP+G     +M   W    +PN +   + +++ + + LL+ +L++DP +R  A +ALR+P+F
Sbjct:  160 VSTRWYRAPEVLLRSTNYSSPIDVWAVGCIMAEVYTLRPLFPGASEIDTIFKICQVLGT-------------------PKKTDWPEGYQLSSAMNFRWPQC-VPNNLKTLIPNASSEAVQLLRDMLQWDPKKRPTASQALRYPYF 284          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: DYRK2_CHICK (Dual specificity tyrosine-phosphorylation-regulated kinase 2 OS=Gallus gallus GN=DYRK2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 52/156 (33.33%), Postives = 78/156 (50.00%), Query Frame = 2
Query:   17 VSTRHYRAPEVILGLGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEK------YFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGD----LIDLLQGLLRYDPAERLKAREALRHPFFMR 454
            + +R YRAPEVILG  +  P D+WS+GCIL EL +G  L    +  + LA M  +LG +P   ++ + +RA+       Y R        DG+   +  R+    LR P    +  +   G      +D L+  L +DPA R+   +ALRHP+  R
Sbjct:  308 IQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDEGDQLACMIELLG-MPSPKLLDSSKRAKNFVSSKGYPRYCTITTLSDGSIILNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAIRMTPSQALRHPWLRR 462          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: DYR1A_XENTR (Dual specificity tyrosine-phosphorylation-regulated kinase 1A OS=Xenopus tropicalis GN=dyrk1a PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 47/166 (28.31%), Postives = 82/166 (49.40%), Query Frame = 2
Query:   17 VSTRHYRAPEVILGLGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH-----------------VDHSAGDLI---DLLQGLLRYDPAERLKAREALRHPFFMR 454
            + +R YR+PEV+LG+ ++   D+WS+GCIL+E+ +GE LF     ++ ++ +  VLG  P H++ +A  +A K+F +      P+G  +    +   K  + P     H                   H+  D +   DL+  +L YD   R++   AL+H FF +
Sbjct:  314 IQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMSKIVEVLGIPPAHILDQAP-KARKFFEK-----MPEGTWNLKKTKDGKKEYKPPGTRKLHNLLGVETGGPGGRRGGESGHTVADYLKFKDLILRMLDYDAKTRIQPYYALQHSFFKK 473          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: CDKL1_RAT (Cyclin-dependent kinase-like 1 OS=Rattus norvegicus GN=Cdkl1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 50/158 (31.65%), Postives = 84/158 (53.16%), Query Frame = 2
Query:   17 VSTRHYRAPEVILG-LGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPL-PHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF--MRDVRRCGFP 478
            V+TR YR+PE+++G   +  P D+W++GC+  EL SG  L+    +++ L ++ + LG L P H  + +     +YF  G ++  P+   + +        L+ PN     + +SA   +  L+G L  DPAERL   + L+HP+F  +RDV     P
Sbjct:  162 VATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFS---MNQYF-SGVKIPDPEDMETLE--------LKFPN-----ISYSA---LGFLKGCLHMDPAERLTCEQLLQHPYFDSIRDVGELARP 299          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: CDC2_CHICK (Cell division control protein 2 homolog OS=Gallus gallus GN=CDC2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 49/151 (32.45%), Postives = 75/151 (49.67%), Query Frame = 2
Query:    5 HSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV--WKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 448
            +++ V T  YR+PEV+LG   ++ P D+WS+G I  EL + + LF     ++ L  + R LG  P++ V                  WPD  + +D       WK    P  +  HV +   D +DLL  +L YDPA+R+  + AL HP+F
Sbjct:  160 YTHEVVTLWYRSPEVLLGSALYSTPVDIWSIGTIFAELATKKPLFHGDSEIDQLFRIFRALGT-PNNDV------------------WPDVESLQDYKNTFPKWK----PGSLGTHVQNLDEDGLDLLSKMLIYDPAKRISGKMALNHPYF 287          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: PRP4B_RAT (Serine/threonine-protein kinase PRP4 homolog OS=Rattus norvegicus GN=Prpf4b PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.043e-12
Identity = 49/161 (30.43%), Postives = 79/161 (49.07%), Query Frame = 2
Query:   11 YVVSTRHYRAPEVILGLGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDW--PDGATSRDSMRAVWKLLRLPNLIMQHVD---------HSAGDLIDLLQGLLRYDPAERLKAREALRHPFFMRDV 460
            Y+VS R YRAPE+I+G  ++Y  D+WSVGC L EL +G+ LF    N   L +   + G +P+ M IR     +++F +     +   D  T R+ +  +  +    +L+   +               L DLL  +L  DPA+R+   +AL+H F    +
Sbjct:  849 YLVS-RFYRAPEIIIGKSYDYGIDMWSVGCTLYELYTGKILFPGKTNNHMLKLAMDLKGKMPNKM-IRKGVFKDQHFDQNLNFMYIEVDKVTEREKVTVMSTINPTKDLLADLIGCQRLPEDQRKKVHQLKDLLDQILMLDPAKRISINQALQHAFIQEKI 1007          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: PRP4B_MOUSE (Serine/threonine-protein kinase PRP4 homolog OS=Mus musculus GN=Prpf4b PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.043e-12
Identity = 49/161 (30.43%), Postives = 79/161 (49.07%), Query Frame = 2
Query:   11 YVVSTRHYRAPEVILGLGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDW--PDGATSRDSMRAVWKLLRLPNLIMQHVD---------HSAGDLIDLLQGLLRYDPAERLKAREALRHPFFMRDV 460
            Y+VS R YRAPE+I+G  ++Y  D+WSVGC L EL +G+ LF    N   L +   + G +P+ M IR     +++F +     +   D  T R+ +  +  +    +L+   +               L DLL  +L  DPA+R+   +AL+H F    +
Sbjct:  849 YLVS-RFYRAPEIIIGKSYDYGIDMWSVGCTLYELYTGKILFPGKTNNHMLKLAMDLKGKMPNKM-IRKGVFKDQHFDQNLNFMYIEVDKVTEREKVTVMSTINPTKDLLADLIGCQRLPEDQRKKVHQLKDLLDQILMLDPAKRISINQALQHAFIQEKI 1007          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: PRP4B_HUMAN (Serine/threonine-protein kinase PRP4 homolog OS=Homo sapiens GN=PRPF4B PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.043e-12
Identity = 49/161 (30.43%), Postives = 79/161 (49.07%), Query Frame = 2
Query:   11 YVVSTRHYRAPEVILGLGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDW--PDGATSRDSMRAVWKLLRLPNLIMQHVD---------HSAGDLIDLLQGLLRYDPAERLKAREALRHPFFMRDV 460
            Y+VS R YRAPE+I+G  ++Y  D+WSVGC L EL +G+ LF    N   L +   + G +P+ M IR     +++F +     +   D  T R+ +  +  +    +L+   +               L DLL  +L  DPA+R+   +AL+H F    +
Sbjct:  849 YLVS-RFYRAPEIIIGKSYDYGIDMWSVGCTLYELYTGKILFPGKTNNHMLKLAMDLKGKMPNKM-IRKGVFKDQHFDQNLNFMYIEVDKVTEREKVTVMSTINPTKDLLADLIGCQRLPEDQRKKVHQLKDLLDQILMLDPAKRISINQALQHAFIQEKI 1007          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: PRP4B_BOVIN (Serine/threonine-protein kinase PRP4 homolog OS=Bos taurus GN=PRPF4B PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.043e-12
Identity = 49/161 (30.43%), Postives = 79/161 (49.07%), Query Frame = 2
Query:   11 YVVSTRHYRAPEVILGLGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDW--PDGATSRDSMRAVWKLLRLPNLIMQHVD---------HSAGDLIDLLQGLLRYDPAERLKAREALRHPFFMRDV 460
            Y+VS R YRAPE+I+G  ++Y  D+WSVGC L EL +G+ LF    N   L +   + G +P+ M IR     +++F +     +   D  T R+ +  +  +    +L+   +               L DLL  +L  DPA+R+   +AL+H F    +
Sbjct:  850 YLVS-RFYRAPEIIIGKSYDYGIDMWSVGCTLYELYTGKILFPGKTNNHMLKLAMDLKGKMPNKM-IRKGVFKDQHFDQNLNFMYIEVDKVTEREKVTVMSTINPTKDLLADLIGCQRLPEDQRKKVHQLKDLLDQILMLDPAKRISINQALQHAFIQEKI 1008          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: MBK1_CAEEL (Dual specificity tyrosine-phosphorylation-regulated kinase mbk-1 OS=Caenorhabditis elegans GN=mbk-1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 49/171 (28.65%), Postives = 83/171 (48.54%), Query Frame = 2
Query:   17 VSTRHYRAPEVILGLGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDG----ATSRDSMRAVWK---LLRLPNLI-----------MQHVDHSAGD---LIDLLQGLLRYDPAERLKAREALRHPFFMRDVRR 466
            + +R YR+PEV+LG+ ++   D+WS+GCIL+E+ +GE LF     ++ +  +  VLG  P  M +    +  KYF +       DG      +RD  R  +K     +L  ++           +    HS  D     DL++ +L++DP +R+     +RHPF  +   R
Sbjct:  491 IQSRFYRSPEVLLGIAYDTKIDMWSLGCILVEMHTGEPLFAGSSEVDQMMKIVEVLGMPPKEM-LDIGPKTHKYFDK-----TEDGIYYCKKTRDGYRHTYKAPGARKLHEILGVTSGGPGGRRLGEPGHSVEDYSKFKDLIKRMLQFDPKQRISPYYVVRHPFLKQKEER 655          
The following BLAST results are available for this feature:
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
ICK_HUMAN4.117e-1330.34Serine/threonine-protein kinase ICK OS=Homo sapien... [more]
DYRK2_CHICK1.198e-1233.33Dual specificity tyrosine-phosphorylation-regulate... [more]
DYR1A_XENTR1.198e-1228.31Dual specificity tyrosine-phosphorylation-regulate... [more]
CDKL1_RAT1.198e-1231.65Cyclin-dependent kinase-like 1 OS=Rattus norvegicu... [more]
CDC2_CHICK1.198e-1232.45Cell division control protein 2 homolog OS=Gallus ... [more]
PRP4B_RAT2.043e-1230.43Serine/threonine-protein kinase PRP4 homolog OS=Ra... [more]
PRP4B_MOUSE2.043e-1230.43Serine/threonine-protein kinase PRP4 homolog OS=Mu... [more]
PRP4B_HUMAN2.043e-1230.43Serine/threonine-protein kinase PRP4 homolog OS=Ho... [more]
PRP4B_BOVIN2.043e-1230.43Serine/threonine-protein kinase PRP4 homolog OS=Bo... [more]
MBK1_CAEEL2.669e-1228.65Dual specificity tyrosine-phosphorylation-regulate... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00043 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00043 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622952 ID=BQ622952; Name=BQ622952; organism=Citrus sinensis; type=EST; length=616bp
GGATCACAGCTATGTTGTATCAACACGACATTATCGTGCACCAGAGGTTA
TTTTAGGCCTTGGATGGAATTATCCTTGTGATTTGTGGAGTGTGGGTTGC
ATTCTTATAGAACTTTGCTCCGGCGAGGCTCTTTTTCAAACGCACGAGAA
TTTAGAGCATCTTGCCATGATGGAGAGGGTTTTAGGGCCTCTCCCCCACC
ATATGGTGATAAGAGCTGACCGCCGTGCTGAGAAATATTTTAGGAGAGGT
GCACGACTGGATTGGCCTGATGGTGCAACTTCGAGAGATAGCATGAGGGC
AGTTTGGAAACTTCTCCGTCTCCCGAACCTGATAATGCAGCATGTAGATC
ACTCTGCCGGTGATTTGATTGATCTCCTTCAGGGGCTCCTCCGATATGAT
CCAGCAGAGCGGCTCAAAGCCAGGGAAGCCCTAAGACATCCTTTCTTCAT
GAGAGATGTGAGAAGGTGTGGCTTTCCCTTGTAATTGCAAAGCCTCGTCT
TTGCTATTGACGAGCTTGTTCAATTTTAGAAAAGAAATAATACACAGCCA
TGCACGTGGGGAATGATATTCTATTGGCTCTTTTTTATACATTGCTGGTT
GATAGTAAAATTATGT
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