BQ622952

Overview
NameBQ622952
Unique NameBQ622952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10231 contig Csv1_Contig10231:504..1119. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: DYRK4_MOUSE (Dual specificity tyrosine-phosphorylation-regulated kinase 4 OS=Mus musculus GN=Dyrk4 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 45/141 (31.91%), Postives = 71/141 (50.35%), Query Frame = 2
Query:   17 VSTRHYRAPEVILGLGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH 439
            + +R YR+PEVILG  +N   D+WS+GCI+ EL +G  LF     +E LA +  VLG  P H    A RR   +  +G     P    +    +       L  ++++  D S    +D L+  L ++P+ R+   +AL+H
Sbjct:  380 IQSRFYRSPEVILGHPYNMAIDMWSLGCIMAELYTGYPLFPGENEVEQLACIMEVLGLPPAHFTQTASRRQVFFDSKGL----PKNINNNRGGKRYPDSKDL-TMVVKTYDSS---FLDFLRRCLVWEPSLRMTPEQALKH 512          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: CKB11_ARATH (Cyclin-dependent kinase B1-1 OS=Arabidopsis thaliana GN=CDKB1-1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 50/154 (32.47%), Postives = 74/154 (48.05%), Query Frame = 2
Query:    5 HSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRD-SMRAVWK----LLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 448
            +++ + T  YRAPEV+LG   ++   D+WSVGCI  E+   +ALF      + L  + R+LG                         WP  +T RD  +   W+     L +P+L  Q VD        LL  +L+Y+PAER+ A+ AL HP+F
Sbjct:  175 YTHEIVTLWYRAPEVLLGSTHYSTGVDMWSVGCIFAEMVRRQALFPGDSEFQQLLHIFRLLGTPTEQQ-------------------WPGVSTLRDWHVYPKWEPQDLTLAVPSLSPQGVD--------LLTKMLKYNPAERISAKTALDHPYF 301          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: CDC2_CAEEL (Cell division control protein 2 homolog OS=Caenorhabditis elegans GN=cdk-1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 50/155 (32.26%), Postives = 77/155 (49.68%), Query Frame = 2
Query:    5 HSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAG-DLID-----LLQGLLRYDPAERLKAREALRHPFF 448
            +++ V T  YRAPE+++G   ++   D+WS+GCI  E+ + + LFQ    ++ L  + RVLG                       L+W +G  S    +A +   R   L  +  D   G  L+D     LL+GLL YDP+ RL A++AL HP+F
Sbjct:  178 YTHEVVTLWYRAPEILMGAQRYSMGVDMWSIGCIFAEMATKKPLFQGDSEIDELFRIFRVLG-------------------TPTELEW-NGVESLPDYKATFPKWRENFLRDKFYDKKTGKHLLDDTAFSLLEGLLIYDPSLRLNAKKALVHPYF 312          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: MK14B_DROME (Mitogen-activated protein kinase 14B OS=Drosophila melanogaster GN=p38b PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 47/146 (32.19%), Postives = 70/146 (47.95%), Query Frame = 2
Query:   17 VSTRHYRAPEVILG-LGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPF 445
            V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   +++  L ++  VLG P    M   +   A  Y R                      L  +P    + +   A  L IDLL+ +L  D  +R+ A +AL HP+
Sbjct:  186 VATRWYRAPEIMLNWMHYNQTADIWSVGCIMAELLTGRTLFPGTDHIHQLNLIMEVLGTPADEFMSRISSESARNYIR---------------------SLPVMPRRNFRDIFRGANPLAIDLLEKMLELDADKRITAEQALAHPY 310          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: MK12_RAT (Mitogen-activated protein kinase 12 OS=Rattus norvegicus GN=Mapk12 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 47/148 (31.76%), Postives = 76/148 (51.35%), Query Frame = 2
Query:   11 YVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRG-ARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 448
            YVV TR YRAPEVIL  + +    D+WSVGCI+ E+ +G+ LF+ +++L+ L  + +V G  P   V +      K +  G   L+  D A+                     + +++   ++LL+ +L  D  +R+ A EAL HP+F
Sbjct:  185 YVV-TRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKILFKGNDHLDQLKEIMKVTGTPPPEFVQKLQSAEAKNYMEGLPELEKKDFASV--------------------LTNASPQAVNLLEKMLVLDAEQRVTAAEALAHPYF 311          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: MK12_DANRE (Mitogen-activated protein kinase 12 OS=Danio rerio GN=mapk12 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 51/151 (33.77%), Postives = 73/151 (48.34%), Query Frame = 2
Query:   11 YVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP----NLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 448
            YVV TR YRAPEVIL  + +    D+WSVGCI+ E+  G+ LF+ H++L+ L  + +V G        +                      S D+   V KL R       +++ +V+  A   I +L G+L  DP  R+ A EAL  PFF
Sbjct:  183 YVV-TRWYRAPEVILSWMHYTQTVDIWSVGCIMAEMLLGKPLFKGHDHLDQLMEIMKVTGTPSKEFTAKLQ--------------------SEDARNYVTKLPRFRKKDLRILLPNVNPQA---IKVLDGMLLLDPESRITAAEALAFPFF 309          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: HOG1_KLULA (Mitogen-activated protein kinase HOG1 OS=Kluyveromyces lactis GN=HOG1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 44/145 (30.34%), Postives = 72/145 (49.66%), Query Frame = 2
Query:   17 VSTRHYRAPEVILGLG-WNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL-LRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 445
            VSTR+YRAPE++L    +N   D+WS GCI  E+  G+ LF   +++   +++  +LG  P  ++                    D   S ++++ V  L  R P        +   D IDLL+ +L +DP +R+ A +AL HP+
Sbjct:  176 VSTRYYRAPEIMLTWQKYNVEVDIWSAGCIFAEMIEGKPLFPGKDHVHQFSIITDLLGSPPKDVI--------------------DTICSENTLKFVTSLPHRDPVPFSSRFQNLEPDAIDLLEKMLVFDPKKRITAADALAHPY 300          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: CKB12_ARATH (Cyclin-dependent kinase B1-2 OS=Arabidopsis thaliana GN=CDKB1-2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 47/150 (31.33%), Postives = 72/150 (48.00%), Query Frame = 2
Query:    5 HSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRD-SMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 448
            +++ + T  YRAPEV+LG   ++   D+WSVGCI  E+   +ALF      + L  + R+LG                         WP     RD  +   W+    P  + + V   + + IDLL  +L+Y+PAER+ A+ AL HP+F
Sbjct:  177 YTHEIVTLWYRAPEVLLGSTHYSTAVDIWSVGCIFAEMIRRQALFPGDSEFQQLLHIFRLLGTPTEQQ-------------------WPGVMALRDWHVYPKWE----PQDLSRAVPSLSPEGIDLLTQMLKYNPAERISAKAALDHPYF 303          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: Y6481_DICDI (Probable serine/threonine-protein kinase DDB_G0286481 OS=Dictyostelium discoideum GN=DDB_G0286481 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 43/146 (29.45%), Postives = 73/146 (50.00%), Query Frame = 2
Query:   17 VSTRHYRAPEVILGL-GWNYPCDLWSVGCILIELC-SGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 448
            V++RHY+ PE+++ +  ++Y  D+WS+GC+   L    +  F    N + L  + +VLG          D       + G  L     +  +   ++ W+      +  ++ D +  D ID L  LLRYDP ERL A+EA++HP+F
Sbjct:  465 VASRHYKPPELLVNMFDYDYSLDMWSLGCLFAGLILDRDPFFNGDNNNDQLLKIVKVLG---------TDDLFNFLDKFGLSLTDEQSSLIKPRQKSNWERF----IPYENDDIAQPDAIDFLDKLLRYDPTERLTAKEAMKHPYF 597          
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Match: MK12_MOUSE (Mitogen-activated protein kinase 12 OS=Mus musculus GN=Mapk12 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 46/148 (31.08%), Postives = 76/148 (51.35%), Query Frame = 2
Query:   11 YVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRG-ARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 448
            YVV TR YRAPEVIL  + +    D+WSVGCI+ E+ +G+ LF+ +++L+ L  + ++ G  P   V +      K +  G   L+  D A+                     + +++   ++LL+ +L  D  +R+ A EAL HP+F
Sbjct:  185 YVV-TRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKILFKGNDHLDQLKEIMKITGTPPPEFVQKLQSAEAKNYMEGLPELEKKDFASV--------------------LTNASPQAVNLLERMLVLDAEQRVTAAEALTHPYF 311          
The following BLAST results are available for this feature:
BLAST of BQ622952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
DYRK4_MOUSE2.259e-1131.91Dual specificity tyrosine-phosphorylation-regulate... [more]
CKB11_ARATH2.259e-1132.47Cyclin-dependent kinase B1-1 OS=Arabidopsis thalia... [more]
CDC2_CAEEL2.259e-1132.26Cell division control protein 2 homolog OS=Caenorh... [more]
MK14B_DROME2.951e-1132.19Mitogen-activated protein kinase 14B OS=Drosophila... [more]
MK12_RAT2.951e-1131.76Mitogen-activated protein kinase 12 OS=Rattus norv... [more]
MK12_DANRE2.951e-1133.77Mitogen-activated protein kinase 12 OS=Danio rerio... [more]
HOG1_KLULA2.951e-1130.34Mitogen-activated protein kinase HOG1 OS=Kluyverom... [more]
CKB12_ARATH2.951e-1131.33Cyclin-dependent kinase B1-2 OS=Arabidopsis thalia... [more]
Y6481_DICDI3.854e-1129.45Probable serine/threonine-protein kinase DDB_G0286... [more]
MK12_MOUSE3.854e-1131.08Mitogen-activated protein kinase 12 OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00043 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00043 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622952 ID=BQ622952; Name=BQ622952; organism=Citrus sinensis; type=EST; length=616bp
GGATCACAGCTATGTTGTATCAACACGACATTATCGTGCACCAGAGGTTA
TTTTAGGCCTTGGATGGAATTATCCTTGTGATTTGTGGAGTGTGGGTTGC
ATTCTTATAGAACTTTGCTCCGGCGAGGCTCTTTTTCAAACGCACGAGAA
TTTAGAGCATCTTGCCATGATGGAGAGGGTTTTAGGGCCTCTCCCCCACC
ATATGGTGATAAGAGCTGACCGCCGTGCTGAGAAATATTTTAGGAGAGGT
GCACGACTGGATTGGCCTGATGGTGCAACTTCGAGAGATAGCATGAGGGC
AGTTTGGAAACTTCTCCGTCTCCCGAACCTGATAATGCAGCATGTAGATC
ACTCTGCCGGTGATTTGATTGATCTCCTTCAGGGGCTCCTCCGATATGAT
CCAGCAGAGCGGCTCAAAGCCAGGGAAGCCCTAAGACATCCTTTCTTCAT
GAGAGATGTGAGAAGGTGTGGCTTTCCCTTGTAATTGCAAAGCCTCGTCT
TTGCTATTGACGAGCTTGTTCAATTTTAGAAAAGAAATAATACACAGCCA
TGCACGTGGGGAATGATATTCTATTGGCTCTTTTTTATACATTGCTGGTT
GATAGTAAAATTATGT
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