BQ622955

Overview
NameBQ622955
Unique NameBQ622955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length456
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8493 contig Csv1_Contig8493:603..1058. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.391e-30
Identity = 70/127 (55.12%), Postives = 85/127 (66.93%), Query Frame = 1
Query:   16 EAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381
            E VWFK GA +     L+Y G    I   N+V  +  ++VL+G  E YR+  G   E  D L+PG  FDPLGLA DPD FA LKVKEIKNGRLAMF+  GFF+QA VTG+GP++NLA HL+DP  NN
Sbjct:  118 EPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNN 244          
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.391e-30
Identity = 69/127 (54.33%), Postives = 90/127 (70.87%), Query Frame = 1
Query:   16 EAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381
            EAVWFK G+ +     L+Y G    ++   + A+ A ++VL+G  E YR+      ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  129 EAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255          
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.391e-30
Identity = 68/127 (53.54%), Postives = 89/127 (70.08%), Query Frame = 1
Query:   16 EAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381
            EAVWFK G+ +     L+Y G    I+   + A+ A +++L+G  E YRI  G   ++ D ++PGG FDPLGLA DP+  A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  118 EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 244          
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.123e-30
Identity = 68/127 (53.54%), Postives = 89/127 (70.08%), Query Frame = 1
Query:   16 EAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381
            EAVWFK G+ +     L+Y G    I+   + A+ A +++L+G  E YRI  G   ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+ P  NN
Sbjct:  125 EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNN 251          
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.123e-30
Identity = 66/127 (51.97%), Postives = 91/127 (71.65%), Query Frame = 1
Query:   16 EAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381
            EAVWFK G+ +     L+Y G    ++   + ++ A +++L+G  E YR+  G   ++ D L+PGG FDPLGLA+DP++ A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  126 EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252          
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.079e-30
Identity = 69/127 (54.33%), Postives = 88/127 (69.29%), Query Frame = 1
Query:   16 EAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381
            EAVWFK G+ +     L Y G    ++   + A+ A ++VL+G  E YR+  G   ++ D L+PGG FDPLGLA D + FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  126 EAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252          
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 5.327e-30
Identity = 70/127 (55.12%), Postives = 88/127 (69.29%), Query Frame = 1
Query:   16 EAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381
            EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YR+  G   E  D L+PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP++NL  H++DP ANN
Sbjct:  127 EAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253          
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.187e-29
Identity = 67/127 (52.76%), Postives = 88/127 (69.29%), Query Frame = 1
Query:   16 EAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381
            EA WFK G+ +     L+Y G    I+   + A+ A +++L+G  E YRI  G   ++ D ++PGG FDPL LA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL++P  NN
Sbjct:  107 EASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNN 233          
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.550e-29
Identity = 67/127 (52.76%), Postives = 89/127 (70.08%), Query Frame = 1
Query:   16 EAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 381
            EAVWFK G+ +     L+Y G    ++   + A+ A +++L+G  E YRI  G   ++ D L+PGG FDPLGLA+ P+ FA LKVKE+KNGRLAMF+M GFF+ A VTG+GP+ENLA HL+DP  NN
Sbjct:   90 EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNN 216          
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.644e-29
Identity = 69/138 (50.00%), Postives = 91/138 (65.94%), Query Frame = 1
Query:   16 EAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNVER 414
            EAVW K G+ +     L+Y G    ++   + A+ A +++L+G  E YR+  G    + D L+PGG FDPLGLA+DP+ FA LKVKE KNGRLAMF+M GFF+QA VTG+GP+ENLA HL DP  NN  +  +  V R
Sbjct:  129 EAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPR 266          
The following BLAST results are available for this feature:
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB2_CHLMO2.391e-3055.12Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_NICPL2.391e-3054.33Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_SOYBN2.391e-3053.54Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_SOYBN3.123e-3053.54Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB23_APIGR3.123e-3051.97Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_HORVU4.079e-3054.33Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB215_PEA5.327e-3055.12Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB21_SOYBN1.187e-2952.76Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_PEA1.550e-2952.76Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB22_PETSP2.644e-2950.00Chlorophyll a-b binding protein 22L, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00046 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00046 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622955 ID=BQ622955; Name=BQ622955; organism=Citrus sinensis; type=EST; length=456bp
GCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCT
TGATGGAAACACATTGAACTACTTCGGAAAGAACATCCCAATCAACCTTG
TTTTTGCTGTCATTGCTGAGATTGTTCTTGTAGGTGGTGCTGAATATTAT
AGAATCACCAACGGTTTGGATTTGGAGGACAAGCTTCACCCAGGTGGTCC
ATTTGACCCACTGGGATTAGCAAAGGATCCTGACCAATTTGCATTGCTAA
AAGTGAAGGAGATCAAGAATGGAAGACTTGCAATGTTTGCCATGCTTGGT
TTCTTTCTCCAAGCTTATGTCACAGGTGAAGGTCCAGTTGAGAACCTTGC
TAAACATCTCAGTGATCCTTTTGCCAACAACTTGCTTACCGTGATCTCCG
GAAACGTAGAGAGAGCTCCCACCCTGTGATTTCAGTTGTTCTGATGGTCT
TTTCAC
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