BQ622955

Overview
NameBQ622955
Unique NameBQ622955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length456
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8493 contig Csv1_Contig8493:603..1058. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 8.525e-20
Identity = 54/129 (41.86%), Postives = 80/129 (62.02%), Query Frame = 1
Query:   25 WFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 405
            W   G + L+DG++  Y G+ +P ++   +  E++++G  E+ R    LD E +L+PGG F DPLGLA DP + A L++ EIK+ RLAM   LGF +QA  TG+GP+ N A HLSDP    ++   S +
Sbjct:  162 WQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 287          
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.239e-19
Identity = 58/141 (41.13%), Postives = 79/141 (56.03%), Query Frame = 1
Query:   25 WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDLE-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 390
            WF+TG +   G T NY+  N  +      + E+ L+G AE+ R  +            L LE       +  +PGGPF +PLG  KD      LK+KE+KNGRLAM A+LG+F+Q  VTG GP +NL  H++DP  NN+LT
Sbjct:  136 WFQTGVIPPAG-TYNYWADNYTL-----FVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLT 270          
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.032e-17
Identity = 50/110 (45.45%), Postives = 72/110 (65.45%), Query Frame = 1
Query:   25 WFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 351
            W   G + L++G++  Y G+ +P +L   +  E+++VG  E+ R  + LD E +++PGG FDPLGLA DP++   LK+ EIK+ RLAM A L F LQA  TG+GPV  LA
Sbjct:  166 WQDAGKVELVEGSS--YLGQPLPFSLTTLIWIEVLVVGYIEFQR-NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLA 272          
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 1.965e-16
Identity = 47/111 (42.34%), Postives = 71/111 (63.96%), Query Frame = 1
Query:   25 WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFAL-LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 354
            W + G + LDG   +Y G ++P ++   +  E++LVGGAE+YR  +  + E + +PGG FDPL LA + ++ A  LK  EIK+ RLAM +  G+ +QA  TGEG + +LAK
Sbjct:  162 WVEAGKVELDG--ASYAGLSLPFSITQLIWIEVILVGGAEFYR-NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLAK 269          
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.917e-13
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 1
Query:  187 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 405
            +PGG F+PL  A   +     K KEI NGRLAM A LGF +Q  VTG+GP +NL +H+SDP+ N ++  + GN
Sbjct:  184 YPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLGGN 252          
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.835e-12
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 1
Query:  187 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 387
            +PGG F+PL  A  P Q A  K KE+ NGRLAM A LGF +Q  VTG+GP ENL +HLSDP+ N ++
Sbjct:  185 YPGGIFNPLNFA--PTQEA--KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIV 247          
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.241e-11
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 1
Query:  187 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 402
            +PG  F+PL  A   +     K KE+ NGRLAM A LGF +Q  V G+GP ENL +HL+DP+ N ++  ISG
Sbjct:  164 YPGRVFNPLNFAPLEN-----KEKELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWHNTIIQTISG 230          
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 44/104 (42.31%), Postives = 55/104 (52.88%), Query Frame = 1
Query:  112 IAEIVLVGGAEYYRIT----------------NGLDLEDKLHPGGP-FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 369
            I E+VL+G AE  R                  N L   D  +PGG  FDPLG     P +   L+ KEIKNGRLAM A++G + Q   TG GP++NL  HL+DP
Sbjct:  155 IVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
The following BLAST results are available for this feature:
BLAST of BQ622955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB4B_ARATH8.525e-2041.86Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB23_PEA3.239e-1941.13Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB4C_ARATH3.032e-1745.45Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE1.965e-1642.34Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB24_PEA5.917e-1349.32Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH3.835e-1256.72Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB120_HORVU4.241e-1148.61Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB12_SOLLC9.447e-1142.31Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00046 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00046 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622955 ID=BQ622955; Name=BQ622955; organism=Citrus sinensis; type=EST; length=456bp
GCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCT
TGATGGAAACACATTGAACTACTTCGGAAAGAACATCCCAATCAACCTTG
TTTTTGCTGTCATTGCTGAGATTGTTCTTGTAGGTGGTGCTGAATATTAT
AGAATCACCAACGGTTTGGATTTGGAGGACAAGCTTCACCCAGGTGGTCC
ATTTGACCCACTGGGATTAGCAAAGGATCCTGACCAATTTGCATTGCTAA
AAGTGAAGGAGATCAAGAATGGAAGACTTGCAATGTTTGCCATGCTTGGT
TTCTTTCTCCAAGCTTATGTCACAGGTGAAGGTCCAGTTGAGAACCTTGC
TAAACATCTCAGTGATCCTTTTGCCAACAACTTGCTTACCGTGATCTCCG
GAAACGTAGAGAGAGCTCCCACCCTGTGATTTCAGTTGTTCTGATGGTCT
TTTCAC
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