BQ622959

Overview
NameBQ622959
Unique NameBQ622959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1723 contig Csv1_Contig1723:1180..1763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ622959 vs. ExPASy Swiss-Prot
Match: LHTL2_ARATH (Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.690e-13
Identity = 43/155 (27.74%), Postives = 75/155 (48.39%), Query Frame = 1 
Query:    4 ANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVGLKILIWSCFIV----SLVALVGSVQGLIQSLKTYRPF 456
            ANA + VH+IG+YQ++  P+F  +E +  K+            +  P +        R + RT YV  +  +A+  PFF   +G  G  +F P T Y P  M++   K +++  +W     + W C +V    +++A +G ++ +I S K Y  F
Sbjct:  307 ANAFVVVHVIGSYQIYAMPVFDMLETFLVKKM-----------MFAPSF------KLRFITRTLYVAFTMFVAICIPFFGGLLGFFGGFAFAPTTYYLPCIMWLCIKKPKKYGLSW----CINWFCIVVGVILTILAPIGGLRTIIISAKNYEFF 440
The following BLAST results are available for this feature:
BLAST of BQ622959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LHTL2_ARATH3.690e-1327.74Lysine histidine transporter-like 2 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00050 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00050 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622959 ID=BQ622959; Name=BQ622959; organism=Citrus sinensis; type=EST; length=583bp
TTCGCAAACGCCTGCATCGCTGTCCATCTCATTGGGGCTTACCAGGTATT
CTGCCAACCAATATTCGGATTCGTTGAGAAGTGGTGTAACAAACGCTGGC
CAGAAAATAAGTTCATAACAAGCGAGCATGGCATTAATGTTCCATGTTAT
GGAGTGTATCATGTCAATTCATTTAGATTGGTTTGGAGAACAGCATACGT
TATTGTATCAGCAGTGCTGGCCATGATTTTCCCATTCTTCAACGACTTCG
TGGGTCTTATCGGGGCAGCTTCATTCTGGCCATTAACAGTTTATTTTCCG
GTGGAAATGTACATTGCTCGTACTAAGATACGAAGATTTTCATTCACGTG
GGTGGGGTTGAAAATATTAATCTGGTCCTGCTTCATAGTTTCACTTGTCG
CCCTCGTTGGGTCCGTCCAAGGTCTGATCCAAAGCCTCAAGACATACAGG
CCCTTCCAAGCTGTGCAAGAAGAGTGAAACAGATGTATATTTTTACTTAT
ATTTTAATAATTATGGGGTTGGAGCCTCAATGCCAGGGACGATTGACGTA
CCCAACCCCTAAGGGGGAAAAGGGGTTCAGTGA
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