BQ622995

Overview
NameBQ622995
Unique NameBQ622995
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:1008..1666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A_NANEQ (Elongation factor 1-alpha OS=Nanoarchaeum equitans GN=tuf PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.311e-23
Identity = 54/126 (42.86%), Postives = 82/126 (65.08%), Query Frame = 3
Query:   12 DLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 389
            D+ RG VA +  D+P   A    + + ++ HP  I  GYAPVL  HT+H+ V+F EL  K++  +G+ +E+ P+ L+ G+A +VK+ P KP+V+E F   P LGRFA+RDM +TVA+G+ + V  K
Sbjct:  303 DVMRGDVAGHL-DNPPTVAEEIVALIHVIYHPSAITVGYAPVLHVHTAHVPVRFEELRGKVNPATGQVIEENPQALRPGEAAVVKLKPLKPVVIEPFDKIPQLGRFAIRDMGRTVAIGIARQVTPK 427          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A_METBU (Elongation factor 1-alpha OS=Methanococcoides burtonii (strain DSM 6242) GN=tuf PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.311e-23
Identity = 53/126 (42.06%), Postives = 77/126 (61.11%), Query Frame = 3
Query:   12 DLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 389
            D++RG V   + D P   A  FT Q++++ HP  I  GY PV  CHT+  A     +  K+D +SG+  E+ P ++K GDA +V + PT+PM +E  S+ P LGRFA+RDM  T+A G+  SV +K
Sbjct:  297 DVRRGDVCGPA-DKPPSVADEFTGQIVVLQHPSAITVGYTPVFHCHTAQTACTLMAINKKLDPKSGQVKEENPTYIKAGDAAIVTIKPTRPMCIEPVSEIPQLGRFAIRDMGMTIAAGMCMSVTQK 421          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A_UNCMA (Elongation factor 1-alpha OS=Uncultured methanogenic archaeon RC-I GN=tuf PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.712e-23
Identity = 50/125 (40.00%), Postives = 77/125 (61.60%), Query Frame = 3
Query:   15 LKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 389
            ++RG V  +    P   A  F +QV+++ HP  I  GY PV  CHT+ +A   ++++  +D ++G   E+ P F+K GDA +V + PT+P+V+E   + P LGRFA+RDM QTVA GV+  +  K
Sbjct:  303 IRRGDVCGHVDKQPT-VAVEFKAQVVVLQHPSAITAGYTPVFHCHTAQVACTLTQILATLDPKTGGVKEQNPPFIKTGDAAIVLIRPTRPLVIEKVKEIPQLGRFAIRDMGQTVAAGVVMDITPK 426          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A_HALMA (Elongation factor 1-alpha OS=Haloarcula marismortui GN=tuf PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.920e-23
Identity = 52/126 (41.27%), Postives = 76/126 (60.32%), Query Frame = 3
Query:   12 DLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 389
            D++RG V   + DDP   A  F +Q+++M HP  I  GY PV   HT+ +A     +  KID  SG+  E+ P F++NGDA +V + P KP+ +E  S+ P LG FA+RDM QT+A G +  V ++
Sbjct:  297 DIRRGDVCGPA-DDPPSVAETFQAQIVVMQHPSVITEGYTPVFHAHTAQVACTVESIDKKIDPSSGEVAEENPDFIQNGDAAVVTVRPQKPLSIEPSSEIPELGSFAIRDMGQTIAAGKVLGVNER 421          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A_NATPD (Elongation factor 1-alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=tuf PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.814e-23
Identity = 53/126 (42.06%), Postives = 78/126 (61.90%), Query Frame = 3
Query:   12 DLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 389
            D++RG V   + DDP   A  F +QV++M HP  I  GY PV   HT+ +A     +  KID  SG+  E+ P F+++GDA +V + P KP+ +E+ ++ P LG FA+RDM QTVA G + SV ++
Sbjct:  298 DIRRGDVCGPA-DDPPSVAETFQAQVVVMQHPSVITAGYTPVFHAHTAQVACTIESIDKKIDPSSGEVAEENPDFIQSGDAAVVTVRPQKPLSIESSNEIPELGSFAIRDMGQTVAAGKVLSVNER 422          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A_HALWD (Elongation factor 1-alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=tuf PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.229e-22
Identity = 51/126 (40.48%), Postives = 77/126 (61.11%), Query Frame = 3
Query:   12 DLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 389
            D++RG V   S + P   A  F +QV++M HP  I  GY PV   HT+ +A     +  K+D  SG+  E++P F+K+GDA +V + P KP+ +E  ++ P LG FAVRDM QT+A G +  V+++
Sbjct:  297 DIRRGDVCGPSSNAPT-VAETFKAQVVVMQHPSVITAGYTPVFHAHTAQVACTIESIDQKLDPASGEVAEEDPDFIKSGDAAVVTVRPQKPLSIEPSNEIPELGSFAVRDMGQTIAAGKVLEVDER 421          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A_HALSA (Elongation factor 1-alpha OS=Halobacterium salinarium GN=tuf PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.217e-22
Identity = 52/125 (41.60%), Postives = 76/125 (60.80%), Query Frame = 3
Query:   12 DLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 386
            D++RG V   + DDP   A  F +QV++M HP  I  GY PV   HT+ +A     +  K+D  SG+  E+ P F+++GDA +V + P KP+ +E  S+ P LG FAVRDM QT+A G +  V++
Sbjct:  297 DIRRGDVCGPA-DDPPSVADTFQAQVVVMQHPSVITAGYTPVFHAHTAQVACTIESIDKKMDPASGETQEENPDFIQSGDAAVVTVRPQKPLSLEPSSEIPELGSFAVRDMGQTIAAGKVLDVDE 420          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: EF1A_HALS3 (Elongation factor 1-alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=tuf PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.217e-22
Identity = 52/125 (41.60%), Postives = 76/125 (60.80%), Query Frame = 3
Query:   12 DLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 386
            D++RG V   + DDP   A  F +QV++M HP  I  GY PV   HT+ +A     +  K+D  SG+  E+ P F+++GDA +V + P KP+ +E  S+ P LG FAVRDM QT+A G +  V++
Sbjct:  297 DIRRGDVCGPA-DDPPSVADTFQAQVVVMQHPSVITAGYTPVFHAHTAQVACTIESIDKKMDPASGETQEENPDFIQSGDAAVVTVRPQKPLSLEPSSEIPELGSFAVRDMGQTIAAGKVLDVDE 420          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: ERF3_ZYGRO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Zygosaccharomyces rouxii GN=SUP35 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.823e-15
Identity = 41/126 (32.54%), Postives = 76/126 (60.32%), Query Frame = 3
Query:    9 KDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVG-VIKSVE 383
            +D+  GFV ++ K+ P +    F +QV I+     + +G++ V+  HT+   V+ ++L+ K++R + ++ +K P F K G   +  +   +P+ VET+ DYP LGRF +RD   T+A+G ++K +E
Sbjct:  538 EDIAPGFVLTSPKN-PVKNVTRFVAQVAIVELKSILSSGFSCVMHVHTAIEEVRITKLLHKLERGTNRKSKKPPAFAKKGMKIIAVLETERPVCVETYQDYPQLGRFTLRDQGTTIAIGKIVKIIE 662          
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Match: ERF3_CANMA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida maltosa GN=SUP35 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.993e-15
Identity = 41/121 (33.88%), Postives = 72/121 (59.50%), Query Frame = 3
Query:    9 KDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 371
            +DL+ G+V ++ K+ P +    F +Q+ I+     + NG++ V+  HT+   VKF EL  K+++ + ++ +K P F K G   +  +  ++P+  ET+ DYP LGRF +RD   T+A+G I
Sbjct:  589 EDLQPGYVLTSPKN-PVKTVTKFEAQIAIVELKSILSNGFSCVMHLHTAIEEVKFVELKHKLEKGTNRKSKKPPAFAKKGMKIIAILEVSEPVCAETYKDYPQLGRFTLRDQGTTIAIGKI 708          
The following BLAST results are available for this feature:
BLAST of BQ622995 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_NANEQ1.311e-2342.86Elongation factor 1-alpha OS=Nanoarchaeum equitans... [more]
EF1A_METBU1.311e-2342.06Elongation factor 1-alpha OS=Methanococcoides burt... [more]
EF1A_UNCMA1.712e-2340.00Elongation factor 1-alpha OS=Uncultured methanogen... [more]
EF1A_HALMA2.920e-2341.27Elongation factor 1-alpha OS=Haloarcula marismortu... [more]
EF1A_NATPD3.814e-2342.06Elongation factor 1-alpha OS=Natronomonas pharaoni... [more]
EF1A_HALWD3.229e-2240.48Elongation factor 1-alpha OS=Haloquadratum walsbyi... [more]
EF1A_HALSA4.217e-2241.60Elongation factor 1-alpha OS=Halobacterium salinar... [more]
EF1A_HALS34.217e-2241.60Elongation factor 1-alpha OS=Halobacterium salinar... [more]
ERF3_ZYGRO3.823e-1532.54Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_CANMA4.993e-1533.88Eukaryotic peptide chain release factor GTP-bindin... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00086 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00086 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622995 ID=BQ622995; Name=BQ622995; organism=Citrus sinensis; type=EST; length=660bp
TTGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCTTCCAACTCGAAGGAT
GATCCGGCCAGGGAAGCTGCCAACTTCACCTCACAGGTCATCATCATGAA
CCACCCTGGCCAGATTGGAAATGGATATGCCCCAGTGCTTGACTGCCACA
CCTCCCACATTGCCGTCAAGTTTTCTGAGCTCGTGACGAAGATTGATAGG
CGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGAGA
CGCCGGAATGGTTAAGATGATTCCCACCAAGCCCATGGTTGTTGAAACCT
TCTCCGATTACCCACCCCTTGGTCGTTTTGCTGTTAGGGACATGCGTCAG
ACTGTTGCTGTGGGTGTTATCAAGAGTGTTGAGAAGAAGGATCCCACAGG
TGCGAAGGTCACCAAGTCCGCAGCCAAGAAGAAATGAGAAATTTTTATGG
GTCTGTCTACAATAGTTAGGGTTTATTTTCTGTCTTTTTTTATTTTCTTG
TCTGTTTTTGTTTTGCATCAATGTTTCTGCAAACAGCCCTATTTGCTTCC
ACCAGTTTGCTGTTGAGCAATTGGGATGTTATCTTTCTGCTTAACTGGCT
GTGGGTGGGTGTTCGGATTTTTATATTCTGAATTTGGTTAATAGCACTAA
ATTGAGTTGT
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