BQ623005

Overview
NameBQ623005
Unique NameBQ623005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623005_ssr477 microsatellite BQ623005_ssr477:477..488. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYBA_HUMAN (Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEGRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            +G W   ED ++ ELV +YGP+ W+LIA++L+GR GK CR RW N L+P + + +++      +  AH+  GN+WA IA+L PGRTDN++KNH
Sbjct:   87 KGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNH 179          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYBA_CHICK (Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEGRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            +G W   ED ++ ELV +YGP+ W+LIA++L+GR GK CR RW N L+P + + +++      +  AH+  GN+WA IA+L PGRTDN++KNH
Sbjct:   87 KGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEAEDRVIYEAHKRLGNRWAEIAKLLPGRTDNSIKNH 179          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MB3R1_ARATH (Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.952e-22
Identity = 43/93 (46.24%), Postives = 64/93 (68.82%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEGRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            +G W   ED  + +LV +YGP+ W+ I+++L GR GK CR RW N L+P IN+ A++      L+ AH++YGNKWA + +  PGR+DN++KNH
Sbjct:   87 KGPWSKEEDNTIIDLVEKYGPKKWSTISQHLPGRIGKQCRERWHNHLNPGINKNAWTQEEELTLIRAHQIYGNKWAELMKFLPGRSDNSIKNH 179          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYBB_MOUSE (Myb-related protein B OS=Mus musculus GN=Mybl2 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.330e-22
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEGRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            +G W   ED K+ ELV +YG + W LIA++L+GR GK CR RW N L+P + +  ++      +  AH++ GN+WA IA++ PGRTDNAVKNH
Sbjct:   83 KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNH 175          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYBB_HUMAN (Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.330e-22
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEGRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            +G W   ED K+ ELV +YG + W LIA++L+GR GK CR RW N L+P + +  ++      +  AH++ GN+WA IA++ PGRTDNAVKNH
Sbjct:   83 KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNH 175          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYBA_DICDI (Myb-like protein A OS=Dictyostelium discoideum GN=mybA PE=4 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 7.418e-22
Identity = 47/93 (50.54%), Postives = 61/93 (65.59%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEGRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            +G W   ED K+ ELV  YGP+ W+ IA +L+GR GK CR RW N L+P I + A+S      +   H ++GNKWA IA+  PGRTDNA+KNH
Sbjct:  201 KGAWTKDEDDKVIELVKTYGPKKWSDIALHLKGRMGKQCRERWHNHLNPNIKKEAWSDEEDQIIRDQHAIHGNKWAEIAKFLPGRTDNAIKNH 293          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYBAA_DICDI (Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.688e-22
Identity = 50/109 (45.87%), Postives = 67/109 (61.47%), Query Frame = 3
Query:  258 IKRPVSGKNGHTKLCARGHWRPAEDAKLKELVAQYGPQNWNLIAENLEGRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            +K+    K+   +  A+GHW   ED KL+ LV  +G + W  IA  L  R+G+ CR RW NQLDP I R A++      +L AH  YGNKWA I++L PGRT+ A+KNH
Sbjct:  741 LKKSGRSKSSSNESKAKGHWTKEEDEKLRSLVDLHGTKRWKYIASLLCLRNGRQCRERWSNQLDPSIKRDAWTLEEDRIILDAHSKYGNKWAEISKLLPGRTNCAIKNH 849          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB_AVIMB (Transforming protein Myb OS=Avian myeloblastosis virus GN=V-MYB PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 3.681e-21
Identity = 44/93 (47.31%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEGRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            +G W   ED ++ E V +YGP+ W+ IA++L+GR GK CR RW N L+P + + +++      +  AH+  GN+WA IA+L PGRTDNAVKNH
Sbjct:   21 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNH 113          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB_DROME (Myb protein OS=Drosophila melanogaster GN=Myb PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.547e-19
Identity = 44/93 (47.31%), Postives = 57/93 (61.29%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEGRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            +G W   ED  + +LV  +GP+ W LIA  L GR GK CR RW N L+P I + A++      +  AH   GN+WA IA+  PGRTDNA+KNH
Sbjct:  136 KGPWTRDEDDMVIKLVRNFGPKKWTLIARYLNGRIGKQCRERWHNHLNPNIKKTAWTEKEDEIIYQAHLELGNQWAKIAKRLPGRTDNAIKNH 228          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYBQ_DICDI (Myb-like protein Q OS=Dictyostelium discoideum GN=mybQ PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.877e-19
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEGRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            +G W+  EDAKL ELV + GP+ W+ IA  + GR GK CR RWFN L P + +  ++      ++ AH   GNKW  I+++  GR  NA+KNH
Sbjct:  277 KGPWKDEEDAKLVELVNKCGPKEWSSIAAKIPGRIGKQCRERWFNHLSPEVRKTNWTPEEDKIIIDAHASLGNKWTAISKMLDGRPANAIKNH 369          
The following BLAST results are available for this feature:
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
MYBA_HUMAN1.952e-2247.31Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=... [more]
MYBA_CHICK1.952e-2247.31Myb-related protein A OS=Gallus gallus GN=MYBL1 PE... [more]
MB3R1_ARATH1.952e-2246.24Myb-related protein 3R-1 OS=Arabidopsis thaliana G... [more]
MYBB_MOUSE3.330e-2248.39Myb-related protein B OS=Mus musculus GN=Mybl2 PE=... [more]
MYBB_HUMAN3.330e-2248.39Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=... [more]
MYBA_DICDI7.418e-2250.54Myb-like protein A OS=Dictyostelium discoideum GN=... [more]
MYBAA_DICDI9.688e-2245.87Myb-like protein AA OS=Dictyostelium discoideum GN... [more]
MYB_AVIMB3.681e-2147.31Transforming protein Myb OS=Avian myeloblastosis v... [more]
MYB_DROME1.547e-1947.31Myb protein OS=Drosophila melanogaster GN=Myb PE=1... [more]
MYBQ_DICDI5.877e-1944.09Myb-like protein Q OS=Dictyostelium discoideum GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00096 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00096 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623005 ID=BQ623005; Name=BQ623005; organism=Citrus sinensis; type=EST; length=586bp
GTGGCGATGGCAATGTTTTCAATGGAGTTCATCAAGGGATGAACTTTATG
GCTCCTTCTTCTCATCTTTCTCTGTCAAACACTTTTGGGACTAAAAATCC
TGAAACTGGGTTTCAGATTTTGAGCCCTTGTCCTATGGAGATAAATAAGA
AACCATGGGAAGCTAGGAGAATCTGTGTTGAGGAGAGAGATGGGGTCTTT
GGTGTTCATAAAAATAAGGGGCTGTCTTTGGATTTGGGCGAGGAAGTTGA
GGATGTTATTAAGCGCCCTGTTTCTGGAAAAAATGGCCACACTAAGCTCT
GTGCTAGAGGCCATTGGAGGCCAGCGGAAGATGCGAAGCTTAAAGAGCTG
GTTGCTCAATATGGTCCTCAAAATTGGAACTTGATCGCTGAGAATCTTGA
AGGAAGATCAGGGAAGAGTTGCAGATTGAGATGGTTTAATCAGCTGGATC
CAAGAATCAACAGGAGGGCTTTCAGTGAAGAAGAAGAAGAGAGGCTGTTA
GCTGCTCATAGGTTGTACGGTAACAAATGGGCCATGATTGCCAGACTGTT
CCCCGGAAGAACTGATAATGCTGTCAAGAATCATTG
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