BQ623005

Overview
NameBQ623005
Unique NameBQ623005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623005_ssr477 microsatellite BQ623005_ssr477:477..488. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB98_ARATH (Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.309e-18
Identity = 45/104 (43.27%), Postives = 59/104 (56.73%), Query Frame = 3
Query:  273 SGKNGHTKLCARGHWRPAEDAKLKELVAQYGPQNWNLIAENLEGRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            S K        +G W   ED  L +LV +YG + W+ IA+ L GR GK CR RW N L P I +  +S      L+  H+  GNKWA IA+  PGRT+N++KNH
Sbjct:  206 SWKETKKSTLVKGQWTAEEDRVLIQLVEKYGLRKWSHIAQVLPGRIGKQCRERWHNHLRPDIKKETWSEEEDRVLIEFHKEIGNKWAEIAKRLPGRTENSIKNH 309          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB23_ARATH (Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            +G W   ED  L + V  +G  +WN IA+     R GKSCRLRW N L P +NR  F+      ++  H+L GN+W++IA+  PGRTDN VKN+
Sbjct:   14 KGLWTVEEDKILMDYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVNRGNFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNY 107          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB3_HORVU (Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17
Identity = 45/107 (42.06%), Postives = 60/107 (56.07%), Query Frame = 3
Query:  264 RPVSGKNGHTKLCARGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKN 581
            RP SG  G  K+  +G W P ED KL   + ++G   W+ +       R GKSCRLRW N L P + R  FS      ++A H++ GN+W+ IA   PGRTDN +KN
Sbjct:    3 RPSSGAVGQPKV-RKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCFSQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKN 108          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSJ (Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.212e-17
Identity = 42/94 (44.68%), Postives = 56/94 (59.57%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            +G W  AEDA L + V ++G  NWN + +N    R GKSCRLRW N L P + + AF+      ++  H   GNKWA +A   PGRTDN +KN+
Sbjct:   42 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNY 135          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSI (Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.212e-17
Identity = 42/94 (44.68%), Postives = 56/94 (59.57%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            +G W  AEDA L + V ++G  NWN + +N    R GKSCRLRW N L P + + AF+      ++  H   GNKWA +A   PGRTDN +KN+
Sbjct:   42 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNY 135          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: WER_ARATH (Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.501e-17
Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = 3
Query:  273 SGKNGHTKLCARGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            SG  G+ +   +G W   ED  L + V  +G  +WN IA+     R GKSCRLRW N L P + R  F+      ++  H+L GN+W++IA+  PGRTDN VKN+
Sbjct:    8 SGDEGNNEY-KKGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVKRGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNY 111          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB82_ARATH (Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.501e-17
Identity = 44/94 (46.81%), Postives = 55/94 (58.51%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            RG W+P ED  LK  V  +G  NW  I+      R GKSCRLRW N L P I R + S      ++  H+L GN+W++IA   PGRTDN VKN+
Sbjct:   14 RGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKNYLRPNIKRGSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNY 107          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB46_ARATH (Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.383e-17
Identity = 42/105 (40.00%), Postives = 58/105 (55.24%), Query Frame = 3
Query:  270 VSGKNGHTKLCARGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKN 581
            ++      K   +G W P ED+KL + +   G   W+ +A+N    R GKSCRLRW N L P + R AFS      ++  H + GN+W+ IA   PGRTDN +KN
Sbjct:    8 IAASTHQVKKMKKGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKN 112          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: LAF1_ARATH (Transcription factor LAF1 OS=Arabidopsis thaliana GN=LAF1 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.601e-16
Identity = 42/95 (44.21%), Postives = 53/95 (55.79%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNL--IAENLEGRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            +G W P ED KL+  +  YG   W    I   L+ R+GKSCRLRW N L P + R   S      +L  H   GNKW+ IA+  PGRTDN +KN+
Sbjct:   12 KGLWSPEEDEKLRSFILSYGHSCWTTVPIKAGLQ-RNGKSCRLRWINYLRPGLKRDMISAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNY 105          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MY104_ARATH (Transcription factor MYB104 OS=Arabidopsis thaliana GN=MYB104 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.730e-16
Identity = 39/97 (40.21%), Postives = 54/97 (55.67%), Query Frame = 3
Query:  294 KLCARGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKN 581
            K   +  W+P ED  LK+ V QYG + W  + +      +  SCR RW N L P + +  F+     R+L  H + GNKW+ +AR FPGRTDN +KN
Sbjct:   14 KTFTKSKWKPEEDRILKDYVIQYGDRTWTHVPKRTGLPHNPASCRFRWMNHLKPSLKKGPFTDEEEKRVLQLHAVLGNKWSQMAREFPGRTDNEIKN 110          
The following BLAST results are available for this feature:
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
MYB98_ARATH1.309e-1843.27Transcription factor MYB98 OS=Arabidopsis thaliana... [more]
MYB23_ARATH2.469e-1744.68Transcription factor MYB23 OS=Arabidopsis thaliana... [more]
MYB3_HORVU3.225e-1742.06Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB... [more]
GAM1_ORYSJ4.212e-1744.68Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
GAM1_ORYSI4.212e-1744.68Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
WER_ARATH5.501e-1741.90Transcription factor WER OS=Arabidopsis thaliana G... [more]
MYB82_ARATH5.501e-1746.81Transcription factor MYB82 OS=Arabidopsis thaliana... [more]
MYB46_ARATH9.383e-1740.00Transcription factor MYB46 OS=Arabidopsis thaliana... [more]
LAF1_ARATH1.601e-1644.21Transcription factor LAF1 OS=Arabidopsis thaliana ... [more]
MY104_ARATH2.730e-1640.21Transcription factor MYB104 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00096 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00096 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623005 ID=BQ623005; Name=BQ623005; organism=Citrus sinensis; type=EST; length=586bp
GTGGCGATGGCAATGTTTTCAATGGAGTTCATCAAGGGATGAACTTTATG
GCTCCTTCTTCTCATCTTTCTCTGTCAAACACTTTTGGGACTAAAAATCC
TGAAACTGGGTTTCAGATTTTGAGCCCTTGTCCTATGGAGATAAATAAGA
AACCATGGGAAGCTAGGAGAATCTGTGTTGAGGAGAGAGATGGGGTCTTT
GGTGTTCATAAAAATAAGGGGCTGTCTTTGGATTTGGGCGAGGAAGTTGA
GGATGTTATTAAGCGCCCTGTTTCTGGAAAAAATGGCCACACTAAGCTCT
GTGCTAGAGGCCATTGGAGGCCAGCGGAAGATGCGAAGCTTAAAGAGCTG
GTTGCTCAATATGGTCCTCAAAATTGGAACTTGATCGCTGAGAATCTTGA
AGGAAGATCAGGGAAGAGTTGCAGATTGAGATGGTTTAATCAGCTGGATC
CAAGAATCAACAGGAGGGCTTTCAGTGAAGAAGAAGAAGAGAGGCTGTTA
GCTGCTCATAGGTTGTACGGTAACAAATGGGCCATGATTGCCAGACTGTT
CCCCGGAAGAACTGATAATGCTGTCAAGAATCATTG
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