BQ623005

Overview
NameBQ623005
Unique NameBQ623005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623005_ssr477 microsatellite BQ623005_ssr477:477..488. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.337e-14
Identity = 41/107 (38.32%), Postives = 57/107 (53.27%), Query Frame = 3
Query:  285 GHTKLCARGH-----WRPAEDAKLKELVAQYGPQNWNLI--AENLEGRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            G +  C + H     W   ED  L + + ++G   W  +  A  L+ R GKSCRLRW N L P + R  F+      ++  H L GNKW++IA   PGRTDN +KN+
Sbjct:    2 GRSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQ-RCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNY 107          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.337e-14
Identity = 38/94 (40.43%), Postives = 51/94 (54.26%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            +G W   ED KL   +  +G   W  +  +    R GKSCRLRW N L P + R  F+      ++  H L GNKW++IA   PGRTDN +KN+
Sbjct:   14 KGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINYLRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNY 107          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB15_ANTMA (Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.359e-14
Identity = 40/95 (42.11%), Postives = 53/95 (55.79%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEG--RSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            RG W   ED KL   V + G Q W +I + L G  R GKSCRLRW N L P + +   +     +++  H   GN+W+ IA   PGRTDN +KN+
Sbjct:   14 RGPWTEEEDQKLTSYVLKNGIQGWRVIPK-LAGLSRCGKSCRLRWMNYLRPDLKKGPLTEMEENQIIELHAHLGNRWSKIALHIPGRTDNEIKNY 107          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.693e-14
Identity = 39/95 (41.05%), Postives = 53/95 (55.79%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQ-NWNLIAENLE-GRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            +G W P EDAKLK  +   G   NW  + + +   R GKSCRLRW N L P I    FS      + + +   G++W++IA   PGRTDN +KN+
Sbjct:   14 KGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNY 108          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.693e-14
Identity = 40/106 (37.74%), Postives = 54/106 (50.94%), Query Frame = 3
Query:  285 GHTKLCA-----RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEG-RSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            G T  C      RG W   ED  L   +A++G  +W  + +N    R GKSCRLRW N L   + R   S      ++  H   GN+W++IA   PGRTDN +KN+
Sbjct:    2 GRTPCCEKVGLKRGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADVKRGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNY 107          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.435e-14
Identity = 40/96 (41.67%), Postives = 55/96 (57.29%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEG---RSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            RG W P ED+KL++ + +YG    N I+  L+    R GKSCRLRW N L P I    FS      + +     G++W++IA   PGRTDN +KN+
Sbjct:   14 RGPWSPEEDSKLRDYIEKYG-NGGNWISFPLKAGLRRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNY 108          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens GN=PP2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.435e-14
Identity = 42/95 (44.21%), Postives = 50/95 (52.63%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEG--RSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            RG W   ED KL   +   G   W  I + L G  R GKSCRLRW N L P + R  FS      +L  H   GN+W+ IA   PGRTDN +KN+
Sbjct:   14 RGPWTSEEDQKLVSHITNNGLSCWRAIPK-LAGLLRCGKSCRLRWTNYLRPDLKRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNY 107          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.435e-14
Identity = 37/93 (39.78%), Postives = 53/93 (56.99%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKN 581
            +G W   ED  L   +A +G   WN +A++    R+GKSCRLRW N L P + R   +      ++  H  +GN+W+ IA+  PGRTDN +KN
Sbjct:   22 KGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLIIMELHAKWGNRWSKIAKHLPGRTDNEIKN 114          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB1_HORVU (Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.435e-14
Identity = 40/106 (37.74%), Postives = 54/106 (50.94%), Query Frame = 3
Query:  285 GHTKLCARGH-----WRPAEDAKLKELVAQYGPQNWNLIAENLEG-RSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            G +  C + H     W   ED +L   +  +G   W  + +     R GKSCRLRW N L P + R  FS      ++  H L GNKW++IA   PGRTDN +KN+
Sbjct:    2 GRSPCCEKAHTNKGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNY 107          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB38_MAIZE (Myb-related protein Zm38 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.710e-14
Identity = 38/94 (40.43%), Postives = 51/94 (54.26%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEG-RSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            RG W   ED +L   +  +G   W  + +     R GKSCRLRW N L P + R  F+      ++  H L GNKW++IA   PGRTDN +KN+
Sbjct:   14 RGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNY 107          
The following BLAST results are available for this feature:
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
MYB3_ARATH3.337e-1438.32Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
MYB32_ARATH3.337e-1440.43Transcription factor MYB32 OS=Arabidopsis thaliana... [more]
MYB15_ANTMA4.359e-1442.11Myb-related protein 315 OS=Antirrhinum majus GN=MY... [more]
RAX3_ARATH5.693e-1441.05Transcription factor RAX3 OS=Arabidopsis thaliana ... [more]
MYBP_MAIZE5.693e-1437.74Myb-related protein P OS=Zea mays GN=P PE=2 SV=1[more]
RAX1_ARATH7.435e-1441.67Transcription factor RAX1 OS=Arabidopsis thaliana ... [more]
MYB2_PHYPA7.435e-1444.21Myb-related protein Pp2 OS=Physcomitrella patens G... [more]
MYB21_ARATH7.435e-1439.78Transcription factor MYB21 OS=Arabidopsis thaliana... [more]
MYB1_HORVU7.435e-1437.74Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1... [more]
MYB38_MAIZE9.710e-1440.43Myb-related protein Zm38 OS=Zea mays PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00096 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00096 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623005 ID=BQ623005; Name=BQ623005; organism=Citrus sinensis; type=EST; length=586bp
GTGGCGATGGCAATGTTTTCAATGGAGTTCATCAAGGGATGAACTTTATG
GCTCCTTCTTCTCATCTTTCTCTGTCAAACACTTTTGGGACTAAAAATCC
TGAAACTGGGTTTCAGATTTTGAGCCCTTGTCCTATGGAGATAAATAAGA
AACCATGGGAAGCTAGGAGAATCTGTGTTGAGGAGAGAGATGGGGTCTTT
GGTGTTCATAAAAATAAGGGGCTGTCTTTGGATTTGGGCGAGGAAGTTGA
GGATGTTATTAAGCGCCCTGTTTCTGGAAAAAATGGCCACACTAAGCTCT
GTGCTAGAGGCCATTGGAGGCCAGCGGAAGATGCGAAGCTTAAAGAGCTG
GTTGCTCAATATGGTCCTCAAAATTGGAACTTGATCGCTGAGAATCTTGA
AGGAAGATCAGGGAAGAGTTGCAGATTGAGATGGTTTAATCAGCTGGATC
CAAGAATCAACAGGAGGGCTTTCAGTGAAGAAGAAGAAGAGAGGCTGTTA
GCTGCTCATAGGTTGTACGGTAACAAATGGGCCATGATTGCCAGACTGTT
CCCCGGAAGAACTGATAATGCTGTCAAGAATCATTG
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