BQ623005

Overview
NameBQ623005
Unique NameBQ623005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623005_ssr477 microsatellite BQ623005_ssr477:477..488. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.656e-13
Identity = 39/106 (36.79%), Postives = 54/106 (50.94%), Query Frame = 3
Query:  285 GHTKLCARGH-----WRPAEDAKLKELVAQYGPQNWNLIAENLEG-RSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            G +  C + H     W   ED +L   +  +G   W  + +     R GKSCRLRW N L P + R  F+      ++  H L GNKW++IA   PGRTDN +KN+
Sbjct:    2 GRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNY 107          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.656e-13
Identity = 39/106 (36.79%), Postives = 54/106 (50.94%), Query Frame = 3
Query:  285 GHTKLCARGH-----WRPAEDAKLKELVAQYGPQNWNLIAENLEG-RSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            G +  C + H     W   ED +L   +  +G   W  + +     R GKSCRLRW N L P + R  F+      ++  H L GNKW++IA   PGRTDN +KN+
Sbjct:    2 GRSPCCEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNY 107          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.163e-13
Identity = 39/106 (36.79%), Postives = 54/106 (50.94%), Query Frame = 3
Query:  285 GHTKLCARGH-----WRPAEDAKLKELVAQYGPQNWNLIAENLEG-RSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            G +  C + H     W   ED +L   +  +G   W  + +     R GKSCRLRW N L P + R  F+      ++  H L GNKW++IA   PGRTDN +KN+
Sbjct:    2 GRSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNY 107          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MY113_ARATH (Transcription factor MYB113 OS=Arabidopsis thaliana GN=MYB113 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.690e-13
Identity = 37/94 (39.36%), Postives = 50/94 (53.19%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            +G W   ED  L++ + +YG   W+ +       R  KSCRLRW N L P I R          +L  H+L GN+W++IA   PGRT N VKN+
Sbjct:   10 KGTWTTEEDILLRQCIDKYGEGKWHRVPLRTGLNRCRKSCRLRWLNYLKPSIKRGKLCSDEVDLVLRLHKLLGNRWSLIAGRLPGRTANDVKNY 103          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.220e-13
Identity = 39/95 (41.05%), Postives = 49/95 (51.58%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEG--RSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            +G W   ED KL   +   G   W  + + L G  R GKSCRLRW N L P + R   S      ++  H   GN+W+ IA   PGRTDN +KNH
Sbjct:   14 KGPWTAEEDKKLISFILTNGQCCWRAVPK-LAGLKRCGKSCRLRWTNYLRPDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNH 107          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB1_NEUCR (Myb-like DNA-binding protein myb-1 OS=Neurospora crassa GN=rca-1 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.831e-12
Identity = 38/93 (40.86%), Postives = 49/93 (52.69%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEGRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            RG W   ED +L +LV   GP NW  +A  L  R+ K CR RW   L P +N    +      ++    L G +WA IAR   GR+DNAVKN+
Sbjct:    9 RGPWSAGEDQRLIKLVKDLGPGNWVNVARILGTRTPKQCRERWHQNLKPGLNHGPMTQEEAAIIVREVDLKGPRWADIARKLQGRSDNAVKNY 101          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: RS2_MAIZE (Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.124e-12
Identity = 35/89 (39.33%), Postives = 48/89 (53.93%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLE---GRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRT 563
            R  WRP EDA L+  V QYGP+ W+L+++ +     R  KSC  RW N L P I + + +      ++     +GNKW  IA   PGRT
Sbjct:    4 RQRWRPEEDAVLRAYVRQYGPREWHLVSQRMNVALDRDAKSCLERWKNYLRPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRT 92          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.124e-12
Identity = 38/95 (40.00%), Postives = 51/95 (53.68%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQ-NWNLIAENLE-GRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            RG W P EDAKLK+ + + G   NW  +       R GKSCRLRW N L P I    F+      + +     G++W++IA    GRTDN +KN+
Sbjct:   14 RGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLNYLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNY 108          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: MYB12_ARATH (Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.080e-12
Identity = 35/94 (37.23%), Postives = 48/94 (51.06%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRTDNAVKNH 584
            RG W   ED  L   +   G  +W  + +N    R GKSCRLRW N L   + R   +      ++  H   GN+W++IA   PGRTDN +KN+
Sbjct:   14 RGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINYLRSDLKRGNITPEEEELVVKLHSTLGNRWSLIAGHLPGRTDNEIKNY 107          
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Match: RS2_ORYSJ (Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica GN=RS2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.550e-11
Identity = 35/89 (39.33%), Postives = 47/89 (52.81%), Query Frame = 3
Query:  306 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLEG---RSGKSCRLRWFNQLDPRINRRAFSXXXXXRLLAAHRLYGNKWAMIARLFPGRT 563
            R  WRP EDA L   V QYGP+ W+L+++ +     R  KSC  RW N L P I + + +      ++     +GNKW  IA   PGRT
Sbjct:    9 RQRWRPEEDAILLAYVRQYGPREWSLVSQRMNRPLHRDAKSCLERWKNYLRPGIKKGSLTDDEQRLVIRLQAKHGNKWKKIAAEVPGRT 97          
The following BLAST results are available for this feature:
BLAST of BQ623005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
MYB4_ARATH1.656e-1336.79Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
MYB30_ANTMA1.656e-1336.79Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
MYB08_ANTMA2.163e-1336.79Myb-related protein 308 OS=Antirrhinum majus GN=MY... [more]
MY113_ARATH3.690e-1339.36Transcription factor MYB113 OS=Arabidopsis thalian... [more]
ODO1_PETHY8.220e-1341.05Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 S... [more]
MYB1_NEUCR1.831e-1240.86Myb-like DNA-binding protein myb-1 OS=Neurospora c... [more]
RS2_MAIZE3.124e-1239.33Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=... [more]
RAX2_ARATH3.124e-1240.00Transcription factor RAX2 OS=Arabidopsis thaliana ... [more]
MYB12_ARATH4.080e-1237.23Transcription factor MYB12 OS=Arabidopsis thaliana... [more]
RS2_ORYSJ1.550e-1139.33Protein rough sheath 2 homolog OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00096 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00096 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623005 ID=BQ623005; Name=BQ623005; organism=Citrus sinensis; type=EST; length=586bp
GTGGCGATGGCAATGTTTTCAATGGAGTTCATCAAGGGATGAACTTTATG
GCTCCTTCTTCTCATCTTTCTCTGTCAAACACTTTTGGGACTAAAAATCC
TGAAACTGGGTTTCAGATTTTGAGCCCTTGTCCTATGGAGATAAATAAGA
AACCATGGGAAGCTAGGAGAATCTGTGTTGAGGAGAGAGATGGGGTCTTT
GGTGTTCATAAAAATAAGGGGCTGTCTTTGGATTTGGGCGAGGAAGTTGA
GGATGTTATTAAGCGCCCTGTTTCTGGAAAAAATGGCCACACTAAGCTCT
GTGCTAGAGGCCATTGGAGGCCAGCGGAAGATGCGAAGCTTAAAGAGCTG
GTTGCTCAATATGGTCCTCAAAATTGGAACTTGATCGCTGAGAATCTTGA
AGGAAGATCAGGGAAGAGTTGCAGATTGAGATGGTTTAATCAGCTGGATC
CAAGAATCAACAGGAGGGCTTTCAGTGAAGAAGAAGAAGAGAGGCTGTTA
GCTGCTCATAGGTTGTACGGTAACAAATGGGCCATGATTGCCAGACTGTT
CCCCGGAAGAACTGATAATGCTGTCAAGAATCATTG
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