BQ623006

Overview
NameBQ623006
Unique NameBQ623006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.365e-27
Identity = 59/146 (40.41%), Postives = 82/146 (56.16%), Query Frame = 3
Query:   57 YPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGVGREEAGPNEVLSCGEQEPF 494
            +PC PG  Y+GRG + L  NYNYG  G A+ VD+L +P+ +  + T++F+ A+W WMT  +  +PS+H    G W P+  D  A R  GFG   N++ G   CG G D  + + I  Y  Y D++GVG    G N  L C  Q PF
Sbjct:  126 WPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMT-AQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVG---YGDN--LDCYNQRPF 265          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.365e-27
Identity = 57/155 (36.77%), Postives = 86/155 (55.48%), Query Frame = 3
Query:   30 YCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGVGREEAGPNEVLSCGEQEPF 494
            YC    ++  PC  G  Y+GRG + L +N+NYG  G+A+  D+L  P+ + ++AT++F  A W WMTP +  +PS H    G W P+ +D  A RV G+G   N++ G   CG G+D+ + + I  Y  Y D++GV  +       L C  Q PF
Sbjct:  178 YCQQSAQW--PCAAGKKYYGRGPIQLSYNFNYGPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTP-QSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDAN-----LDCYSQRPF 324          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.670e-26
Identity = 56/146 (38.36%), Postives = 84/146 (57.53%), Query Frame = 3
Query:   57 YPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGVGREEAGPNEVLSCGEQEPF 494
            +PC  G  Y+GRG + + +NYNYG+ G+A+ VD++N+P+ +  +A ++F+ A W WMTP +  +PS H+   G W P+  D  A R+ GFG   N++ G   CGKG    + + I  Y  Y D++   R   G N  L C  Q PF
Sbjct:  166 WPCAAGRKYYGRGPIQISYNYNYGQAGKAIGVDLVNNPDLVATDAVISFKTAFWFWMTP-QSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDIL---RVSYGNN--LDCNNQRPF 305          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.346e-26
Identity = 49/121 (40.50%), Postives = 74/121 (61.16%), Query Frame = 3
Query:   57 YPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYY 419
            +PC PG  Y GRG + +  NYNYG  G A+ VD+LN+P+ +  +  ++F++A+W WMTP +  +PS HD  +G W+P+  D  A R+ GFG   N++ G   CG+G D  + + I  Y  Y
Sbjct:  180 WPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTP-QSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRY 299          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.150e-25
Identity = 62/158 (39.24%), Postives = 83/158 (52.53%), Query Frame = 3
Query:   24 QIYCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMN-NMISHYLYYLDLMGVGREEAGPNEVLSCGEQEPF 494
            Q YCD    Y   C  G  Y GRG + L WNYNYG  G+ LK+ +L  PE +E +  ++F+ A+W WM P +  +PS H    GNW P+  D  A RV G+G   N++ G   CG+G   + N + I  Y  Y D +G      G N  L C +Q PF
Sbjct:  180 QPYCDPSSNYQ--CVAGKQYCGRGPIQLSWNYNYGLCGDDLKLPLLQEPELVETDPVISFKTAIWFWMKP-QSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGT---TYGSN--LDCYQQRPF 329          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.120e-22
Identity = 51/141 (36.17%), Postives = 80/141 (56.74%), Query Frame = 3
Query:   72 GVSYHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGVGREEAGPNEVLSCGEQEPF 494
            G  Y+GRG + L    NY   G+A++ D++N+P+ +  +AT++F+ A+W WMTP + ++PS HD   G W P+  DT A RV G+G   N++ G   CGKG +  + + I +Y   + +M V      P + L C  Q  F
Sbjct:  117 GNGYYGRGPIQLTGQSNYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTP-QGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNV-----APGDNLDCYNQRNF 251          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.463e-22
Identity = 46/115 (40.00%), Postives = 71/115 (61.74%), Query Frame = 3
Query:   81 YHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLD 425
            Y GRG + + +NYNYG  G+A+ VD+L +P+ + ++ T+ F+ A+W WMTP +  +PS+HD   G W P+  D  A RV G+G   N++ G   CGKG +  + + I +Y   LD
Sbjct:   79 YFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTP-QSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYKDNLD 192          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.239e-21
Identity = 48/138 (34.78%), Postives = 80/138 (57.97%), Query Frame = 3
Query:   81 YHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGVGREEAGPNEVLSCGEQEPF 494
            Y+GRG + L    NY + G A+  +++N+P+ +  +AT++F+ A+W WMTP + ++PS+HD  +G W P+  D  A RV G+G   N++ G   CG G ++++ + I +Y  Y  ++ V      P E L C  Q  F
Sbjct:  119 YYGRGPIQLTNRNNYEKAGTAIGQELVNNPDLVATDATISFKTAIWFWMTP-QDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNV-----APGENLDCYNQRNF 250          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.604e-21
Identity = 47/138 (34.06%), Postives = 79/138 (57.25%), Query Frame = 3
Query:   81 YHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGVGREEAGPNEVLSCGEQEPF 494
            Y+GRG + L    NY + G A++ D++N+P+ +  +AT++F+ A+W WMTP + ++PS+HD  +G+W P+  D  A R  G G   N++ G   CG G + ++ + I +Y  Y  ++ V      P + L C  Q  F
Sbjct:  119 YYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTP-QDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNV-----APGDNLDCYNQRNF 250          
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.028e-21
Identity = 49/138 (35.51%), Postives = 77/138 (55.80%), Query Frame = 3
Query:   81 YHGRGALPLYWNYNYGETGEALKVDILNHPEYIENNATLAFQAAMWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLAKRVHGFGTTMNVLYGDQVCGKGDDESMNNMISHYLYYLDLMGVGREEAGPNEVLSCGEQEPF 494
            Y+GRG + L    NY   G AL +D++ +P+ +  +A ++F+ A+W WMT  + ++PS HD  +G W P+  DT A RV G+G   N++ G   CG G +++  + I +Y  Y D++G     AG    L C  Q  F
Sbjct:  128 YYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMT-AQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLG-----AGYGSNLDCYNQRNF 259          
The following BLAST results are available for this feature:
BLAST of BQ623006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIC_SECCE3.365e-2740.41Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI12_ORYSJ3.365e-2736.77Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_VITVI1.670e-2638.36Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI4_SOLTU6.346e-2640.50Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI6_POPTR3.150e-2539.24Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIT_PETHY1.120e-2236.17Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIT_AVESA1.463e-2240.00Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHIQ_TOBAC1.239e-2134.78Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIP_TOBAC3.604e-2134.06Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI8_ORYSJ8.028e-2135.51Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00097 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00097 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623006 ID=BQ623006; Name=BQ623006; organism=Citrus sinensis; type=EST; length=664bp
ACAACAAGGAGATGAGTCCTAACCAGATATACTGTGATGATGACTTCAAA
TACACATATCCTTGCACTCCTGGAGTTTCATATCATGGCCGCGGTGCCTT
GCCCCTCTACTGGAACTACAACTATGGGGAAACAGGAGAAGCCCTAAAAG
TTGATATATTGAACCACCCAGAGTACATAGAAAACAATGCGACCCTAGCC
TTTCAGGCAGCAATGTGGAGGTGGATGACTCCAGTGAAGAAGCATCAGCC
GTCGGCGCACGACGCGTTCGTTGGTAACTGGAAGCCTACCAAGAATGACA
CATTGGCCAAAAGGGTGCATGGATTTGGCACCACCATGAATGTTCTTTAT
GGTGACCAAGTTTGTGGCAAGGGTGATGACGAGTCAATGAACAACATGAT
CTCACATTATCTGTACTATCTTGATTTGATGGGCGTTGGCCGTGAGGAAG
CAGGTCCGAATGAAGTGCTCAGCTGCGGCGAGCAGGAGCCGTTCAATCCA
TCATCTCCTTCATCATCATCGTCATCCTCTTCGTTATCTTCTTGAGTGAT
TCCTTTTTTGAGATAATGCATTATATAATATACATATATAGTGAATGAAA
AATATTAACATCAAGTTTGATGTTGGGTGATCATCATGCTTGACTGCTAT
ATGTGTTATTGCAT
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