BQ623015

Overview
NameBQ623015
Unique NameBQ623015
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig444 contig Csv1_Contig444:62..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623015 vs. ExPASy Swiss-Prot
Match: PLAS1_TOBAC (Plastocyanin A'/A'' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.277e-44
Identity = 84/99 (84.85%), Postives = 93/99 (93.94%), Query Frame = 2
Query:  227 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 523
            IEVLLG DDG LAFVP +FSVS+GEKI FKNNAGFPHNVVFDEDEIP+GVDVSKISMS E+ LNGPGETY+VTL+EKGTY+FYC+PHQGAGMVG+VTVN
Sbjct:    1 IEVLLGSDDGGLAFVPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAGVDVSKISMSEEEYLNGPGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 99          
BLAST of BQ623015 vs. ExPASy Swiss-Prot
Match: PLAS_SOLCR (Plastocyanin OS=Solanum crispum GN=PETE PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.668e-44
Identity = 84/99 (84.85%), Postives = 91/99 (91.92%), Query Frame = 2
Query:  227 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 523
            IEVLLG DDG LAFVP +FS+S+GEKI FKNNAGFPHNVVFDEDEIP+GVD SKISM  EDLLN PGETY+VTL+EKGTYSFYCSPHQGAGMVG+VTVN
Sbjct:    1 IEVLLGSDDGGLAFVPGNFSISAGEKITFKNNAGFPHNVVFDEDEIPAGVDASKISMPEEDLLNAPGETYSVTLSEKGTYSFYCSPHQGAGMVGKVTVN 99          
BLAST of BQ623015 vs. ExPASy Swiss-Prot
Match: PLAS_SAMNI (Plastocyanin OS=Sambucus nigra GN=PETE PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.668e-44
Identity = 82/99 (82.83%), Postives = 92/99 (92.93%), Query Frame = 2
Query:  227 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 523
            +E+LLGG+DGSLAF+PS+FSV SGEKI FKNNAGFPHNVVFDEDE+PSGVD +KISMS +DLLN PGETY+VTLTE GTY FYCSPHQGAGMVG+VTVN
Sbjct:    1 VEILLGGEDGSLAFIPSNFSVPSGEKITFKNNAGFPHNVVFDEDEVPSGVDSAKISMSEDDLLNAPGETYSVTLTESGTYKFYCSPHQGAGMVGKVTVN 99          
BLAST of BQ623015 vs. ExPASy Swiss-Prot
Match: PLAS_CUCPE (Plastocyanin OS=Cucurbita pepo GN=PETE PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.668e-44
Identity = 84/99 (84.85%), Postives = 91/99 (91.92%), Query Frame = 2
Query:  227 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 523
            IEVLLGGDDGSLAF+P+ FSV++GEKIVFKNNAGFPHNVVFDEDEIPSGVD  KISM+ EDLLN PGE Y V LTEKG+YSFYCSPHQGAGMVG+VTVN
Sbjct:    1 IEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDAGKISMNEEDLLNAPGEVYKVNLTEKGSYSFYCSPHQGAGMVGKVTVN 99          
BLAST of BQ623015 vs. ExPASy Swiss-Prot
Match: PLAS_LACSA (Plastocyanin OS=Lactuca sativa GN=PETE PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.846e-44
Identity = 85/98 (86.73%), Postives = 90/98 (91.84%), Query Frame = 2
Query:  230 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 523
            EVLLG  DG L F PS+FSV+SGEKIVFKNNAGFPHNVVFDEDEIP+GVD SKISMS EDLLN PGETYAVTLTEKGTYSFYC+PHQGAGMVG+VTVN
Sbjct:    2 EVLLGSSDGGLVFEPSTFSVASGEKIVFKNNAGFPHNVVFDEDEIPAGVDASKISMSEEDLLNAPGETYAVTLTEKGTYSFYCAPHQGAGMVGKVTVN 99          
BLAST of BQ623015 vs. ExPASy Swiss-Prot
Match: PLAS_MERPE (Plastocyanin OS=Mercurialis perennis GN=PETE PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 4.854e-44
Identity = 84/99 (84.85%), Postives = 90/99 (90.91%), Query Frame = 2
Query:  227 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 523
            ++VLLG DDG LAFVP++FSV SGEKI FKNNAGFPHNVVFDEDEIPSGVD SKISM   DLLN PGETYAVTLTEKG+YSFYCSPHQGAGMVG+VTVN
Sbjct:    1 LDVLLGSDDGELAFVPNNFSVPSGEKITFKNNAGFPHNVVFDEDEIPSGVDASKISMDEADLLNAPGETYAVTLTEKGSYSFYCSPHQGAGMVGKVTVN 99          
BLAST of BQ623015 vs. ExPASy Swiss-Prot
Match: PLAS_SOLTU (Plastocyanin OS=Solanum tuberosum GN=PETE PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.081e-43
Identity = 81/99 (81.82%), Postives = 93/99 (93.94%), Query Frame = 2
Query:  227 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 523
            ++VLLGGDDGSLAF+P +FSVS+GEKI FKNNAGFPHNVVFDEDEIP+GVD SKISM+ EDLLN  GETY+VTL+EKGTY+FYC+PHQGAGMVG+VTVN
Sbjct:    1 LDVLLGGDDGSLAFIPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAGVDASKISMAEEDLLNAAGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 99          
BLAST of BQ623015 vs. ExPASy Swiss-Prot
Match: PLAS_CUCSA (Plastocyanin OS=Cucumis sativus GN=PETE PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.409e-43
Identity = 80/99 (80.81%), Postives = 91/99 (91.92%), Query Frame = 2
Query:  227 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 523
            IE+LLGGDDGSLAFVP++F+V+SGEKI FKNNAGFPHNVVFDEDEIPSGVD  KISM+ EDLL+ PG+ Y V LT+KG+YSFYCSPHQGAGMVG+VTVN
Sbjct:    1 IEILLGGDDGSLAFVPNNFTVASGEKITFKNNAGFPHNVVFDEDEIPSGVDSGKISMNEEDLLBAPGZVYZVZLTZKGSYSFYCSPHQGAGMVGKVTVN 99          
BLAST of BQ623015 vs. ExPASy Swiss-Prot
Match: PLAS_CAPBU (Plastocyanin OS=Capsella bursa-pastoris GN=PETE PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.039e-42
Identity = 82/99 (82.83%), Postives = 87/99 (87.88%), Query Frame = 2
Query:  227 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 523
            IEVLLGG DGSLAFVP+ FS++ GEKIVFKNNAGFPHNVVFDEDEIPSGVD SKISM   DLLN  GETY V LTE GTYSFYC+PHQGAGMVG+VTVN
Sbjct:    1 IEVLLGGGDGSLAFVPNDFSIAKGEKIVFKNNAGFPHNVVFDEDEIPSGVDASKISMDENDLLNAAGETYEVALTEAGTYSFYCAPHQGAGMVGKVTVN 99          
BLAST of BQ623015 vs. ExPASy Swiss-Prot
Match: PLAS_PHAVU (Plastocyanin OS=Phaseolus vulgaris GN=PETE PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 5.933e-42
Identity = 82/99 (82.83%), Postives = 86/99 (86.87%), Query Frame = 2
Query:  227 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 523
            +EVLLG  DGSL FVPS FSV SGEKIVFKNNAGFPHNVVFDEDEIP+GVD  KISM  E+LLN PGETY VTL  KGTYSFYCSPHQGAGMVG+VTVN
Sbjct:    1 LEVLLGSGDGSLVFVPSEFSVPSGEKIVFKNNAGFPHNVVFDEDEIPAGVDAVKISMPEEELLNAPGETYVVTLDTKGTYSFYCSPHQGAGMVGKVTVN 99          
The following BLAST results are available for this feature:
BLAST of BQ623015 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
PLAS1_TOBAC1.277e-4484.85Plastocyanin A'/A'' OS=Nicotiana tabacum PE=1 SV=1[more]
PLAS_SOLCR1.668e-4484.85Plastocyanin OS=Solanum crispum GN=PETE PE=1 SV=1[more]
PLAS_SAMNI1.668e-4482.83Plastocyanin OS=Sambucus nigra GN=PETE PE=1 SV=1[more]
PLAS_CUCPE1.668e-4484.85Plastocyanin OS=Cucurbita pepo GN=PETE PE=1 SV=1[more]
PLAS_LACSA2.846e-4486.73Plastocyanin OS=Lactuca sativa GN=PETE PE=1 SV=1[more]
PLAS_MERPE4.854e-4484.85Plastocyanin OS=Mercurialis perennis GN=PETE PE=1 ... [more]
PLAS_SOLTU1.081e-4381.82Plastocyanin OS=Solanum tuberosum GN=PETE PE=1 SV=... [more]
PLAS_CUCSA2.409e-4380.81Plastocyanin OS=Cucumis sativus GN=PETE PE=1 SV=1[more]
PLAS_CAPBU2.039e-4282.83Plastocyanin OS=Capsella bursa-pastoris GN=PETE PE... [more]
PLAS_PHAVU5.933e-4282.83Plastocyanin OS=Phaseolus vulgaris GN=PETE PE=1 SV... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00106 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00106 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623015 ID=BQ623015; Name=BQ623015; organism=Citrus sinensis; type=EST; length=559bp
AACCCCATTTACAGTTACAATGGCTACTGTCACCTCTGCAGCTGTCACCG
TCCCAACTTTCACCGGCCTTAAAGCCGGTGCAACACCAGCCAGAGTTGTT
GGTTCCACCATGAAGGCCTCAGCCTCTGCTGTCCCAAAGCTCAGCATCAA
GGCCACACTCAAAGATGTTGGAGTGGCCGTTGCGGCCACAGCTGCCAGCG
CAATGCTTGCTAGCAATGCCATGGCCATTGAGGTTTTGCTTGGTGGTGAT
GATGGGTCCTTGGCTTTTGTTCCAAGCTCTTTCTCTGTCAGCTCCGGTGA
AAAGATTGTGTTCAAGAACAATGCTGGGTTCCCACACAACGTTGTTTTCG
ATGAAGATGAGATTCCGAGTGGTGTTGATGTTTCAAAAATCTCCATGTCT
ACAGAAGACCTTCTCAATGGTCCTGGAGAGACTTATGCTGTTACTCTGAC
TGAAAAAGGCACTTACTCTTTCTACTGTTCCCCTCACCAAGGAGCTGGCA
TGGTTGGACAAGTGACTGTTAATTAAGTTCACATTCAGACTTTGTTTGCC
TCATCTCAT
back to top