BQ623016

Overview
NameBQ623016
Unique NameBQ623016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623016_ssr48 microsatellite BQ623016_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig892 contig Csv1_Contig892:790..1430. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_HELPY (60 kDa chaperonin OS=Helicobacter pylori GN=groL PE=3 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 5.759e-61
Identity = 117/213 (54.93%), Postives = 156/213 (73.24%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA++KVG DGV+                GM+ DRGY+SP FVTN EK+  + +NA +L+TD+KIS++KDI+PLLEKT +   PLLIIAED+ GEAL TLVVNKLRG+LN+AA+KAPGFG+RRK +L+DIAI+TG +  + +LGL +EN  VE LG A ++ I KD+TTI+       +++ R+AQ+K ++A T S YD EKL ER+AKLSGGV
Sbjct:  163 DAMEKVGKDGVITVEEAKGIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMKEGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAILTGGQVISEELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSHDVKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGV 375          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_HELPS (60 kDa chaperonin OS=Helicobacter pylori (strain Shi470) GN=groL PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 5.759e-61
Identity = 116/213 (54.46%), Postives = 156/213 (73.24%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA++KVG DGV+                GM+ DRGY+SP FVTN EK+  + +NA +L+TD+KIS++KDI+PLLEKT +   PLLIIAED+ GEAL TLVVNKLRG+LN+AA+KAPGFG+RRK +L+DIA++TG +  + +LGL +EN  VE LG A ++ I KD+TTI+       +++ R+AQ+K ++A T S YD EKL ER+AKLSGGV
Sbjct:  163 DAMEKVGKDGVITVEEAKGIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMKEGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAVLTGGQVISEELGLTLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSHDVKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGV 375          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_HELAH (60 kDa chaperonin OS=Helicobacter acinonychis (strain Sheeba) GN=groL PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 5.759e-61
Identity = 116/213 (54.46%), Postives = 156/213 (73.24%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA++KVG DGV+                GM+ DRGY+SP FVTN EK+  + +NA +L+TD+KIS++KDI+PLLEKT +   PLLIIAED+ GEAL TLVVNKLRG+LN+AA+KAPGFG+RRK +L+DIA++TG +  + +LGL +EN  VE LG A ++ I KD+TTI+       +++ R+AQ+K ++A T S YD EKL ER+AKLSGGV
Sbjct:  163 DAMEKVGKDGVITVEEAKGIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMKEGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAVLTGGQVISEELGLTLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSHDVKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGV 375          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_THEYD (60 kDa chaperonin OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=groL PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 7.522e-61
Identity = 120/213 (56.34%), Postives = 155/213 (72.77%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+DKVG DGV+                GM+ DRGYISP F+T+PE+L    E+A VL+ D+KIS +KD++P+LE+  ++  PLLIIAEDV GEALATLVVNKLRG+L V A+KAPGFGERRKA+L+DIAI+TG    + D+GL +EN  VE LG A+K+ I KD+TTI+  A    +IQARI Q+K ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 EAMDKVGKDGVITVEEAKGMATTLDIVEGMQFDRGYISPYFITDPERLECILEDAFVLIHDKKISTMKDLLPILEQIARMGRPLLIIAEDVEGEALATLVVNKLRGVLQVCAVKAPGFGERRKAMLEDIAILTGGTVISEDIGLKLENVKVEDLGKAKKIIIDKDNTTIVEGAGDPQKIQARIKQIKVQIDETTSDYDREKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_JANSC (60 kDa chaperonin OS=Jannaschia sp. (strain CCS1) GN=groL PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.283e-60
Identity = 115/213 (53.99%), Postives = 160/213 (75.12%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA+ KVG DGV+                GM+ DRGY+SP FVTNP+K+I E ++  +L+ ++K+S+++ ++PLLE   Q   PLLIIAEDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+LQDIAI+TG +  A DLG+ +E+ +++ LGTA+++TI KD TTI+  A +K EI+AR+AQ+++++ E+ S YD EKL ER+AKL+GGV
Sbjct:  163 DAMQKVGNDGVITVEENKGLETETDVVEGMQFDRGYLSPYFVTNPDKMIAELDDCLILLHEKKLSSLQPMVPLLETVIQSGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVIAEDLGMKLESVTMDMLGTAKRLTISKDETTIVDGAGNKPEIEARVAQIRQQIEESTSDYDREKLQERVAKLAGGV 375          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH602_SYNJB (60 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.189e-60
Identity = 109/212 (51.42%), Postives = 157/212 (74.06%), Query Frame = 3
Query:    6 AIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            A+D VG DGV+                GM+ DRGYISP FVT+ E+++ E+ENA +L+T  KIS+++D++P+LE+  +   PLL+IAEDV GEALATLVVN+LRG+LN  A+KAP FG+RRKA+L+DIAI+TG +  + D+G+ ++  +++ +G ARK+T+ KD TTI+ D ++K  ++ R+AQ++K+L  TDS YD EKL ERIAKL+GGV
Sbjct:  164 AMDAVGRDGVITVEESKSLETELDVVEGMQFDRGYISPYFVTDSERMVAEYENAYLLITSNKISSLQDLVPILERVAREGRPLLVIAEDVEGEALATLVVNRLRGVLNAVAVKAPAFGDRRKAMLEDIAILTGGQLISEDVGIKLDKVTLDMMGVARKITVTKDKTTIVTDGSTKAAVEKRVAQIRKQLETTDSEYDREKLQERIAKLAGGV 375          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH602_GLOVI (60 kDa chaperonin 2 OS=Gloeobacter violaceus GN=groL2 PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.189e-60
Identity = 113/213 (53.05%), Postives = 158/213 (74.18%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+DKVG +GV+                GM+ D+GY+SP FVT+ E++I + +   +L+TD+KIS I+D+IP+LEK  +   PLLII+ED+ GEALATLVVNKLRG+LN  A+KAPGFG+RRKA+LQDIA++TG +  + D+GL +EN +++ LG ARKVTI KD TTI+A   +K  ++ RIAQ+ K++ +TDS +D EKL ER+AKL+GGV
Sbjct:  163 EAMDKVGKEGVITVEESKSLVTELDVVEGMQFDKGYVSPYFVTDTERMITDLDEPFILLTDKKISIIQDLIPVLEKVARAGRPLLIISEDLEGEALATLVVNKLRGVLNCVAVKAPGFGDRRKAMLQDIAVLTGGDVISEDIGLKLENVTIDMLGKARKVTITKDKTTIVAGTDNKAAVEKRIAQIHKQMEDTDSDFDREKLQERLAKLAGGV 375          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_CAMC1 (60 kDa chaperonin OS=Campylobacter concisus (strain 13826) GN=groL PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 2.858e-60
Identity = 116/213 (54.46%), Postives = 154/213 (72.30%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA++KVG DGV+                GM+ DRGY+SP F+TNPEK+ VE  N  +L+ D+KI+ +KD++P+LE+  +   PLLIIAED+ GEALATLVVNKLRG+LN++A+KAPGFG+RRKA+L+DIAI+TG E  + +LG  +E+ ++  LG A  V I KD+TTI+  A  K  I ARI Q+K ++AET S YD EKL ER+AKLSGGV
Sbjct:  163 DAMEKVGKDGVITVEEAKSIQDELSVVEGMQFDRGYLSPYFITNPEKMQVELSNPFILLFDKKITNLKDLLPVLEQVQKSGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVKAPGFGDRRKAMLEDIAILTGGEVISEELGRTLESATINDLGQASSVVIDKDNTTIVNGAGEKSAIDARITQIKAQIAETTSDYDKEKLQERLAKLSGGV 375          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_METI4 (60 kDa chaperonin OS=Methylacidiphilum infernorum (isolate V4) GN=groL PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 6.368e-60
Identity = 117/213 (54.93%), Postives = 152/213 (71.36%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA+DKVG DG +                GM+ DRGYISP FVTN E+L    ENA +L+ ++KIS +KD++PLLEK  +   PLLIIAEDV GEALATLVVNKLRG L V A+KAPGFG+RRKA+L+DIAI+TG      DLG+ +EN  +E LG A+++ + K++TTII  + S+ EIQ RI Q+++++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 DALDKVGKDGTVTVEEAKHIETTLEVVEGMQFDRGYISPYFVTNAEELEAVLENAYILIHEKKISNLKDLLPLLEKIAKAGRPLLIIAEDVEGEALATLVVNKLRGTLQVCAVKAPGFGDRRKAMLEDIAILTGGRCLTEDLGIKLENVQLEDLGRAKRIIVEKENTTIIEGSGSRSEIQGRINQIRRQIEETTSDYDREKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_DINSH (60 kDa chaperonin OS=Dinoroseobacter shibae (strain DFL 12) GN=groL PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 6.368e-60
Identity = 114/213 (53.52%), Postives = 159/213 (74.65%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA+ KVG +GV+                GM+ DRGY+SP FVTNP+K+  E E+A +L+ ++K+S+++ ++PLLE   Q   PLLIIAEDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+LQDIAI+TG +  + DLG+ +E+ +++ LG+A++V+I KD TTI+  A +K EI+AR+AQ++ ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 DAMQKVGNEGVITVEENKGLETETDVVEGMQFDRGYLSPYFVTNPDKMTTELEDAIILLHEKKLSSLQPMVPLLESVIQSGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLESVTIDMLGSAKRVSITKDETTIVDGAGAKAEIEARVAQIRNQIEETTSDYDREKLQERVAKLAGGV 376          
The following BLAST results are available for this feature:
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_HELPY5.759e-6154.9360 kDa chaperonin OS=Helicobacter pylori GN=groL P... [more]
CH60_HELPS5.759e-6154.4660 kDa chaperonin OS=Helicobacter pylori (strain S... [more]
CH60_HELAH5.759e-6154.4660 kDa chaperonin OS=Helicobacter acinonychis (str... [more]
CH60_THEYD7.522e-6156.3460 kDa chaperonin OS=Thermodesulfovibrio yellowsto... [more]
CH60_JANSC1.283e-6053.9960 kDa chaperonin OS=Jannaschia sp. (strain CCS1) ... [more]
CH602_SYNJB2.189e-6051.4260 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 ... [more]
CH602_GLOVI2.189e-6053.0560 kDa chaperonin 2 OS=Gloeobacter violaceus GN=gr... [more]
CH60_CAMC12.858e-6054.4660 kDa chaperonin OS=Campylobacter concisus (strai... [more]
CH60_METI46.368e-6054.9360 kDa chaperonin OS=Methylacidiphilum infernorum ... [more]
CH60_DINSH6.368e-6053.5260 kDa chaperonin OS=Dinoroseobacter shibae (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00107 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00107 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623016 ID=BQ623016; Name=BQ623016; organism=Citrus sinensis; type=EST; length=641bp
CCGATGCAATTGACAAGGTTGGTCCTGATGGCGTCTTGTCAATCGAGTCA
TCATCATCATTTGAGACTACTGTTGAAGTTGAGGAAGGAATGGAGATTGA
CAGGGGTTACATCTCTCCTCAGTTTGTCACAAACCCTGAGAAATTAATTG
TTGAATTTGAGAATGCTAGAGTGCTGGTCACGGATCAAAAAATTTCAGCA
ATAAAGGATATAATTCCCTTGTTAGAGAAGACCACACAATTGAGAGCACC
ATTGCTTATAATTGCTGAGGATGTCACAGGAGAGGCTTTGGCTACGTTAG
TCGTCAACAAGCTCAGGGGCATCCTTAATGTTGCTGCCATTAAAGCTCCT
GGTTTTGGCGAAAGAAGAAAAGCTCTCCTTCAAGATATTGCCATTGTGAC
TGGAGCTGAGTTTCAAGCTGGAGACCTGGGCTTGCTTATTGAAAACACTT
CAGTTGAGCAGCTAGGTACAGCTAGAAAGGTGACCATCAGAAAGGACTCC
ACTACCATTATTGCTGATGCTGCATCAAAGGATGAAATACAAGCTAGAAT
TGCACAGCTGAAAAAGGAGTTGGCTGAGACGGATTCTGTTTATGACTCAG
AGAAACTTGCTGAGAGAATTGCTAAATTGTCTGGCGGGGTT
back to top