BQ623016 | Citrus Genome Database

Overview


Name	BQ623016
Unique Name	BQ623016
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	641

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
BQ623016_ssr48	microsatellite	BQ623016_ssr48:48..59.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig892	contig	Csv1_Contig892:790..1430.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH601_ROSDO (60 kDa chaperonin 1 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=groL1 PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 8.316e-60
Identity = 113/213 (53.05%), Postives = 155/213 (72.77%), Query Frame = 3

Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA+ KVG DGV+                GM+ DRGY+SP FVTNP+K+  E E+  +L+ ++K+S+++ ++PLLE   Q   PLL+IAEDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+LQDIAI+TG +  + DLG+ +E+ +++ LGTA+KV I KD TT++  A  K EI AR++Q++ ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 DAMQKVGNDGVITVEENKGLETETEVVEGMQFDRGYLSPYFVTNPDKMTAELEDPFILIHEKKLSSLQPLVPLLESIIQAGKPLLVIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLESVTIDMLGTAKKVAITKDETTVVNGAGEKAEIDARVSQIRTQIEETTSDYDREKLQERVAKLAGGV 376

[Close]

BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_PARDP (60 kDa chaperonin OS=Paracoccus denitrificans (strain Pd 1222) GN=groL1 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.086e-59
Identity = 112/213 (52.58%), Postives = 160/213 (75.12%), Query Frame = 3

Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+ +VG +GV+                GM+ DRGY+SP FVTN +K+I E E+A +L+ ++K+S+++ ++PLLE   Q + PLLI+AEDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+LQDIAI+TG +  + DLG+ +EN +++ LG A+KV+I KD+TTI+  A  K EI+AR++Q+++++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 EAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGV 376

[Close]

BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_PARDE (60 kDa chaperonin OS=Paracoccus denitrificans GN=groL PE=1 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.086e-59
Identity = 112/213 (52.58%), Postives = 160/213 (75.12%), Query Frame = 3

Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+ +VG +GV+                GM+ DRGY+SP FVTN +K+I E E+A +L+ ++K+S+++ ++PLLE   Q + PLLI+AEDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+LQDIAI+TG +  + DLG+ +EN +++ LG A+KV+I KD+TTI+  A  K EI+AR++Q+++++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 EAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGV 376

[Close]

BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_GEOMG (60 kDa chaperonin OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=groL PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.086e-59
Identity = 112/213 (52.58%), Postives = 157/213 (73.71%), Query Frame = 3

Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A++KVG +GV+                GM+ DRGY+SP FVT+PE++    ENA +L+ D+KIS +KD++P+LE+T +   PLLIIAED+ GEALATLVVNKLRG+LN+ A+KAPGFG+RRKA+L+DIA++TG +  + +LG  +EN + + LGTA++VTI KD+TTII    S+ +IQ R+ Q++ ++ ET S YD EKL ER+AKL GGV
Sbjct:  163 EAMEKVGKEGVITVEEAKAMETSLETVEGMQFDRGYLSPYFVTDPERMEASLENANILIHDKKISNMKDLLPILEQTAKSGRPLLIIAEDIEGEALATLVVNKLRGVLNICAVKAPGFGDRRKAMLEDIAVLTGGKVISEELGFKLENATFDMLGTAKRVTIDKDNTTIIDGDGSEADIQGRVKQIRAQIEETSSDYDREKLQERLAKLVGGV 375

[Close]

BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_SILST (60 kDa chaperonin OS=Silicibacter sp. (strain TM1040) GN=groL PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.419e-59
Identity = 114/213 (53.52%), Postives = 157/213 (73.71%), Query Frame = 3

Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA+ KVG DGV+                GM+ DRGY+SP FVTN +K+  E E+  +L+ ++K+S+++ ++PLLE+  Q + PLLIIAEDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+LQDIAI+TG +  + DLG+ +E+ +++ LGTA+K+ I KD TTI+  A  K EI+AR+AQ++ ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 DAMQKVGNDGVITVEENKGLETETDVVEGMQFDRGYLSPYFVTNADKMTAELEDCLILLHEKKLSSLQPMVPLLEQVIQSQKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLESVTMDMLGTAKKIQITKDETTIVDGAGEKAEIEARVAQIRAQIEETTSDYDREKLQERVAKLAGGV 376

[Close]

BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_SILPO (60 kDa chaperonin OS=Silicibacter pomeroyi GN=groL PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.419e-59
Identity = 113/213 (53.05%), Postives = 159/213 (74.65%), Query Frame = 3

Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+ KVG +GV+                GM+ DRGY+SP FVTN +K+I E E+  +L+ ++K+S+++ ++PLLE+  Q + PLLIIAEDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+LQDIAI+TG +  + DLG+ +E+ +++ LGTA+K++I KD TTI+  A  K EI+AR+AQ++ ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 EAMQKVGNEGVITVEENKGLETETDVVEGMQFDRGYLSPYFVTNADKMIAELEDCMILLHEKKLSSLQPMVPLLEQVIQSQKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLESVTMDMLGTAKKISITKDETTIVDGAGEKAEIEARVAQIRTQIEETTSDYDREKLQERVAKLAGGV 376

[Close]

BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_GEOUR (60 kDa chaperonin OS=Geobacter uraniireducens (strain Rf4) GN=groL PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.419e-59
Identity = 110/213 (51.64%), Postives = 158/213 (74.18%), Query Frame = 3

Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A++KVG +GV+                GM+ DRGY+SP FVT+PE++    ENA +L+ D+KIS +KD++P+LE+T +   PL+IIAED+ GEALATLVVNKLRG+LN+ A+KAPGFG+RRKA+L+DIA++TG +  + ++G  +ENT+++ LG A+K+T+ KD+TTII  A S+ EIQ R+  ++ ++ ET S YD EKL ER+AKL GGV
Sbjct:  163 EAMEKVGKEGVITVEEAKAMETTLETVEGMQFDRGYLSPYFVTDPERMEATLENANILIHDKKISNMKDLLPVLEQTAKSGRPLIIIAEDIEGEALATLVVNKLRGVLNICAVKAPGFGDRRKAMLEDIAVLTGGKVISEEIGFKLENTTMDMLGQAKKITVDKDNTTIIDGAGSEAEIQGRVKMIRAQIEETTSDYDREKLQERLAKLVGGV 375

[Close]

BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_CAMLR (60 kDa chaperonin OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=groL PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.419e-59
Identity = 115/213 (53.99%), Postives = 154/213 (72.30%), Query Frame = 3

Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA++KVG DGV+                GM+ DRGY+SP F+TN EK+  E +N  +L+ D+KI+ +KD++P+LE+  +   PLLIIAED+ GEALATLVVNKLRG+LN++A+KAPGFG+RRKA+L+DIAI+TG E  + +LG  +E+ S++ LG A  V I KD+TTI+  A  K  I ARI Q+K ++AET S YD EKL ER+AKLSGGV
Sbjct:  163 DAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFITNTEKMTAELQNPFILLFDKKIANLKDLLPILEQIQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVKAPGFGDRRKAMLEDIAILTGGEVISEELGRTLESASIQDLGQASSVIIDKDNTTIVNGAGEKANINARINQIKAQIAETSSDYDREKLQERLAKLSGGV 375

[Close]

BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_HYPNA (60 kDa chaperonin OS=Hyphomonas neptunium (strain ATCC 15444) GN=groL PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.853e-59
Identity = 111/213 (52.11%), Postives = 158/213 (74.18%), Query Frame = 3

Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+ KVG +GV+                GM+ DRGYISP F+TNP+K+IVE E+  +L+ + K+S+++ ++P+LE   Q + PLLIIAEDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+LQD+A++TG +  + DLG+ +EN  +E LG A++V+I KD+TTI+     K EI+AR++Q++K++ +T S YD EKL ER+AKL+GGV
Sbjct:  164 EAMAKVGNEGVITVEEAKALETELDVVEGMQFDRGYISPYFITNPDKMIVELEDVLILLHESKLSSLQPLLPILESVVQSQKPLLIIAEDVDGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDLAVLTGGQVISEDLGIKLENVGMEMLGKAKRVSIDKDNTTIVDGGGKKKEIEARVSQIRKQIDDTSSDYDREKLQERLAKLAGGV 376

[Close]

BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_DICTD (60 kDa chaperonin OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=groL PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.853e-59
Identity = 114/213 (53.52%), Postives = 153/213 (71.83%), Query Frame = 3

Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+DKVG DGV+                GM+ DRGY+S   +T+PE++    E   +L+TD+KISA+ +I+P+LE+  Q   PL+IIAEDV GEALATLVVNKLRG+L   A+KAPGFG+RRKA+LQDIAI+TG +F + + G+ +EN +++ LG A KV   KD TTII    +K +I+ARIAQ+KK+L ETDS +D EKL ER+AKL+GGV
Sbjct:  164 EAMDKVGKDGVITVEESQGITTTLELVEGMQFDRGYLSAYMITDPERMEAVLEEPYILITDKKISAVSEILPILERVVQTGKPLVIIAEDVEGEALATLVVNKLRGVLQSLAVKAPGFGDRRKAMLQDIAILTGGQFISEETGIKLENVTLDMLGRAEKVRANKDKTTIIGGKGNKKDIEARIAQIKKQLEETDSEFDREKLQERLAKLAGGV 376

The following BLAST results are available for this feature:

BLAST of BQ623016 vs. ExPASy Swiss-Prot

BLAST of BQ623016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CH601_ROSDO	8.316e-60	53.05	60 kDa chaperonin 1 OS=Roseobacter denitrificans (...	[more]
CH60_PARDP	1.086e-59	52.58	60 kDa chaperonin OS=Paracoccus denitrificans (str...	[more]
CH60_PARDE	1.086e-59	52.58	60 kDa chaperonin OS=Paracoccus denitrificans GN=g...	[more]
CH60_GEOMG	1.086e-59	52.58	60 kDa chaperonin OS=Geobacter metallireducens (st...	[more]
CH60_SILST	1.419e-59	53.52	60 kDa chaperonin OS=Silicibacter sp. (strain TM10...	[more]
CH60_SILPO	1.419e-59	53.05	60 kDa chaperonin OS=Silicibacter pomeroyi GN=groL...	[more]
CH60_GEOUR	1.419e-59	51.64	60 kDa chaperonin OS=Geobacter uraniireducens (str...	[more]
CH60_CAMLR	1.419e-59	53.99	60 kDa chaperonin OS=Campylobacter lari (strain RM...	[more]
CH60_HYPNA	1.853e-59	52.11	60 kDa chaperonin OS=Hyphomonas neptunium (strain ...	[more]
CH60_DICTD	1.853e-59	53.52	60 kDa chaperonin OS=Dictyoglomus turgidum (strain...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_00107 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00107 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623016 ID=BQ623016; Name=BQ623016; organism=Citrus sinensis; type=EST; length=641bp
CCGATGCAATTGACAAGGTTGGTCCTGATGGCGTCTTGTCAATCGAGTCA
TCATCATCATTTGAGACTACTGTTGAAGTTGAGGAAGGAATGGAGATTGA
CAGGGGTTACATCTCTCCTCAGTTTGTCACAAACCCTGAGAAATTAATTG
TTGAATTTGAGAATGCTAGAGTGCTGGTCACGGATCAAAAAATTTCAGCA
ATAAAGGATATAATTCCCTTGTTAGAGAAGACCACACAATTGAGAGCACC
ATTGCTTATAATTGCTGAGGATGTCACAGGAGAGGCTTTGGCTACGTTAG
TCGTCAACAAGCTCAGGGGCATCCTTAATGTTGCTGCCATTAAAGCTCCT
GGTTTTGGCGAAAGAAGAAAAGCTCTCCTTCAAGATATTGCCATTGTGAC
TGGAGCTGAGTTTCAAGCTGGAGACCTGGGCTTGCTTATTGAAAACACTT
CAGTTGAGCAGCTAGGTACAGCTAGAAAGGTGACCATCAGAAAGGACTCC
ACTACCATTATTGCTGATGCTGCATCAAAGGATGAAATACAAGCTAGAAT
TGCACAGCTGAAAAAGGAGTTGGCTGAGACGGATTCTGTTTATGACTCAG
AGAAACTTGCTGAGAGAATTGCTAAATTGTCTGGCGGGGTT