BQ623016

Overview
NameBQ623016
Unique NameBQ623016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623016_ssr48 microsatellite BQ623016_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig892 contig Csv1_Contig892:790..1430. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_MAGSM (60 kDa chaperonin OS=Magnetococcus sp. (strain MC-1) GN=groL PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.221e-54
Identity = 104/213 (48.83%), Postives = 149/213 (69.95%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+DKVG +GV+                GM+ DRGY+SP FVTN +K++V+ EN  +L+ ++KIS ++ I+ +LE   Q   PL+IIAEDV GEALATLVVNKLRG L V A+KAPGFG+RRKA+++DIA +TG    + D+G+ +EN +++ LG A+ + + K+ TTII  A   + I+AR+ Q++ ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 EAMDKVGKEGVITVEEAKGLETTLDVVEGMQFDRGYLSPYFVTNADKMLVQMENPLILLVEKKISNLQQILQILEGAVQSSRPLMIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMMEDIATLTGGVLVSEDVGVKLENVTMDMLGMAKSIVVTKEDTTIIDGAGDHEAIKARVNQIRAQIEETSSDYDREKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_LISMH (60 kDa chaperonin OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=groL PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.221e-54
Identity = 105/213 (49.30%), Postives = 147/213 (69.01%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+++VG DGV+                GM+ DRGY SP  VT+ +K+    E   +L+TD+KI+ I++I+P+LE+  Q   P+LIIAEDV GEA ATLV+NKLRG  NV A+KAPGFG+RRKA+L+DIA++TG +    DLGL ++  +V+QLGTA KV + KD TTI+  A    +I AR+ Q++ ++ ET S +D EKL ER+AKL+GGV
Sbjct:  162 EAMERVGNDGVITIEESKGFATELDVVEGMQFDRGYTSPYMVTDSDKMEAVLEKPYILITDKKINNIQEILPVLEQVVQQGRPMLIIAEDVEGEAQATLVLNKLRGTFNVVAVKAPGFGDRRKAMLEDIAVLTGGQVITEDLGLELKTATVDQLGTANKVVVTKDDTTIVEGAGDSTQISARVNQIRAQMEETTSEFDREKLQERLAKLAGGV 374          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_LACAC (60 kDa chaperonin OS=Lactobacillus acidophilus GN=groL PE=3 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 5.221e-54
Identity = 107/213 (50.23%), Postives = 149/213 (69.95%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA++KVG DGV+                GM+ DRGY+S   VT+ +K+  + +N  +L+TD+KIS I+DI+PLL++  Q    LLIIA+DVTGEAL TLV+NK+RG  NV A+KAPGFG+RRKA L+DIA +TG      DLG  +++T ++QLG AR+VT+ KDSTTI+  A SKD I+ R   ++K++ E+ S +D +KL ER+AKL+GGV
Sbjct:  162 DAMEKVGHDGVITIEDSRGINTELSVVEGMQFDRGYLSQYMVTDNDKMEADLDNPYILITDKKISNIQDILPLLQEIVQQGKSLLIIADDVTGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAQLEDIAALTGGTVITDDLGFELKDTKIDQLGQARRVTVTKDSTTIVDGAGSKDAIKEREDSIRKQIEESTSDFDKKKLQERLAKLTGGV 374          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_KLEOR (60 kDa chaperonin (Fragment) OS=Klebsiella ornithinolytica GN=groL PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.221e-54
Identity = 105/213 (49.30%), Postives = 148/213 (69.48%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+DKVG +GV+                GM+ DRGY+SP F+  PE   VE E+  +L+ D+K+S I++++P+LE   +   PL+IIAEDV GEALATLVVN +RGI+ VAA+KAPGFG+RRKA+LQDIA +TG    + ++G+ +E  ++E LG A++V I KD+TTII     +  IQ R+AQ++K++ E  S YD EKL ER+AKL+GGV
Sbjct:  164 EAMDKVGKEGVITVEDGTGLEDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKVSNIREMLPVLEAVAKAGKPLVIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEGAIQGRVAQIRKQIEEATSDYDREKLQERVAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_IDILO (60 kDa chaperonin OS=Idiomarina loihiensis GN=groL PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.221e-54
Identity = 105/212 (49.53%), Postives = 148/212 (69.81%), Query Frame = 3
Query:    6 AIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            A+DKVG +GV+                GM+ DRGY+SP F+ N E   VE +N  +L+ D+KIS I++++P+LE  ++   PLLIIAEDV GEALATLVVN +RGI+ VAA+KAPGFG+RRKA+LQDIA++TG    + ++G+ +E T +E LGTA++V I KD+TT++        I  R+ Q+K+++ +T S YD EKL ER+AKL+GGV
Sbjct:  165 AMDKVGQEGVITVEEGQALTDELDVVEGMQFDRGYLSPYFINNQESGSVELDNPFILLIDKKISNIRELLPVLEGVSKAGKPLLIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAVLTGGTVVSEEIGMELEKTQLEDLGTAKRVVITKDNTTVVDGNGDDTAIDGRVNQIKQQMEDTTSDYDREKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_BUCTC (60 kDa chaperonin OS=Buchnera aphidicola subsp. Tetraneura caerulescens GN=groL PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.221e-54
Identity = 106/213 (49.77%), Postives = 152/213 (71.36%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A++KVG DGV+                GM+ DRGY+SP F+  PE  IVE EN  +L+ D+KIS I++++P+LE   +   PLLII+ED+ GEALATLVV  +RGI+ VAA+KAPGFG+RRKA+LQDI+I+T     + +L + +E +++E LG +++V I KD+TTII  + SK +I+ RI+Q+K+++ E+ S YD EKL ER+AKLSGGV
Sbjct:  164 EAMEKVGNDGVITVEEGTGLEDELEVVKGMQFDRGYLSPYFINKPETGIVELENPYILMVDKKISNIRELLPILEAVAKSSKPLLIISEDLEGEALATLVVKSMRGIVKVAAVKAPGFGDRRKAMLQDISILTAGTLISEELAMDLEKSTLEDLGQSKRVVITKDTTTIIDGSGSKKDIKNRISQIKQQIQESTSDYDKEKLNERLAKLSGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_BRECH (60 kDa chaperonin OS=Brevibacillus choshinensis GN=groL PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.221e-54
Identity = 104/213 (48.83%), Postives = 149/213 (69.95%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A++KVG DGV+                GM+ DRGY SP  +T+ +K+     N  +L+TD+KIS I++++P+LE+  Q   PLLIIAEDV GEALATLVVNKLRG     A+KAPGFG+RRKA+LQDIA +TG E    +LGL +++T +EQLG A K+ + K++TT++  A  K  I++R+AQ+++++ +T S +D EKL ER+AKL+GGV
Sbjct:  162 EAMEKVGKDGVITVEESKGFVTELEVVEGMQFDRGYASPYMITDTDKMEAVLNNPFILITDKKISNIQEVLPVLEQVVQSGKPLLIIAEDVEGEALATLVVNKLRGTFTAVAVKAPGFGDRRKAMLQDIAALTGGEVITEELGLDLKSTKLEQLGRAGKIVVTKENTTVVEGAGDKANIESRVAQIRQQIEDTTSDFDREKLQERLAKLAGGV 374          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_BORA1 (60 kDa chaperonin OS=Bordetella avium (strain 197N) GN=groL PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.221e-54
Identity = 103/213 (48.36%), Postives = 148/213 (69.48%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA+DKVG +GV+                GM+ DRGY+SP F+ NPEK +   ++  VL+ D+KIS I+D++P+LE+  +   PLLIIAEDV GEALATLVVN +RGIL   A+KAPGFG+RRKA+L+DIAI+TG    + + G+ +E  ++++LG A+++ + K++TTII  A     I+AR+ Q++ ++ E  S YD EKL ER+AKL+GGV
Sbjct:  164 DAMDKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINNPEKQVAALDDPFVLIYDKKISNIRDLLPVLEQVAKSSRPLLIIAEDVEGEALATLVVNNIRGILKTTAVKAPGFGDRRKAMLEDIAILTGGTVISEETGMSLEKATLQELGQAKRIEVAKENTTIIDGAGDGKSIEARVKQIRAQIEEATSDYDREKLQERVAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_AGGAC (60 kDa chaperonin OS=Aggregatibacter actinomycetemcomitans GN=groL PE=1 SV=3)

HSP 1 Score: 210.69 bits (535), Expect = 5.221e-54
Identity = 104/212 (49.06%), Postives = 149/212 (70.28%), Query Frame = 3
Query:    6 AIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            A++KVG +GV+                GM+ DRGY+SP F+  PE   VE +N  +L+ D+KIS I++++P+LE   +   PLLIIAEDV GEALATLVVN +RGI+ VAA+KAPGFG+RRKA+LQDIAI+T     + ++G+ +E  ++E LG A+++ I KD+TTII     + +IQ R+AQ+++++ E+ S YD EKL ER+AKL+GGV
Sbjct:  165 AMEKVGKEGVITVEDGTGLEDELDVVEGMQFDRGYLSPYFINKPETATVELDNPFILLVDKKISNIRELLPVLEGVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIAILTAGTVISEEIGMELEKATLEDLGQAKRIVINKDNTTIIDGIGDEAQIQGRVAQIRQQIEESTSDYDKEKLQERVAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_ACTSZ (60 kDa chaperonin OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=groL PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.221e-54
Identity = 104/212 (49.06%), Postives = 149/212 (70.28%), Query Frame = 3
Query:    6 AIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            A++KVG +GV+                GM+ DRGY+SP F+  PE   VE +N  +L+ D+KIS I++++P+LE   +   PLLIIAEDV GEALATLVVN +RGI+ VAA+KAPGFG+RRKA+LQDIAI+T     + ++G+ +E  ++E LG A++V I KD+TTII     + +I+ R+AQ+++++ E+ S YD EKL ER+AKL+GGV
Sbjct:  165 AMEKVGKEGVITVEDGTGLEDELDVVEGMQFDRGYLSPYFINKPETATVEMDNPYILLVDKKISNIRELLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIAILTAGTVISEEIGMELEKAALEDLGQAKRVVINKDNTTIIDGVGDEAQIKGRVAQIRQQIEESTSDYDKEKLQERVAKLAGGV 376          
The following BLAST results are available for this feature:
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_MAGSM5.221e-5448.8360 kDa chaperonin OS=Magnetococcus sp. (strain MC-... [more]
CH60_LISMH5.221e-5449.3060 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH60_LACAC5.221e-5450.2360 kDa chaperonin OS=Lactobacillus acidophilus GN=... [more]
CH60_KLEOR5.221e-5449.3060 kDa chaperonin (Fragment) OS=Klebsiella ornithi... [more]
CH60_IDILO5.221e-5449.5360 kDa chaperonin OS=Idiomarina loihiensis GN=groL... [more]
CH60_BUCTC5.221e-5449.7760 kDa chaperonin OS=Buchnera aphidicola subsp. Te... [more]
CH60_BRECH5.221e-5448.8360 kDa chaperonin OS=Brevibacillus choshinensis GN... [more]
CH60_BORA15.221e-5448.3660 kDa chaperonin OS=Bordetella avium (strain 197N... [more]
CH60_AGGAC5.221e-5449.0660 kDa chaperonin OS=Aggregatibacter actinomycetem... [more]
CH60_ACTSZ5.221e-5449.0660 kDa chaperonin OS=Actinobacillus succinogenes (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00107 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00107 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623016 ID=BQ623016; Name=BQ623016; organism=Citrus sinensis; type=EST; length=641bp
CCGATGCAATTGACAAGGTTGGTCCTGATGGCGTCTTGTCAATCGAGTCA
TCATCATCATTTGAGACTACTGTTGAAGTTGAGGAAGGAATGGAGATTGA
CAGGGGTTACATCTCTCCTCAGTTTGTCACAAACCCTGAGAAATTAATTG
TTGAATTTGAGAATGCTAGAGTGCTGGTCACGGATCAAAAAATTTCAGCA
ATAAAGGATATAATTCCCTTGTTAGAGAAGACCACACAATTGAGAGCACC
ATTGCTTATAATTGCTGAGGATGTCACAGGAGAGGCTTTGGCTACGTTAG
TCGTCAACAAGCTCAGGGGCATCCTTAATGTTGCTGCCATTAAAGCTCCT
GGTTTTGGCGAAAGAAGAAAAGCTCTCCTTCAAGATATTGCCATTGTGAC
TGGAGCTGAGTTTCAAGCTGGAGACCTGGGCTTGCTTATTGAAAACACTT
CAGTTGAGCAGCTAGGTACAGCTAGAAAGGTGACCATCAGAAAGGACTCC
ACTACCATTATTGCTGATGCTGCATCAAAGGATGAAATACAAGCTAGAAT
TGCACAGCTGAAAAAGGAGTTGGCTGAGACGGATTCTGTTTATGACTCAG
AGAAACTTGCTGAGAGAATTGCTAAATTGTCTGGCGGGGTT
back to top