BQ623016

Overview
NameBQ623016
Unique NameBQ623016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623016_ssr48 microsatellite BQ623016_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig892 contig Csv1_Contig892:790..1430. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_GEOSF (60 kDa chaperonin OS=Geobacter sp. (strain FRC-32) GN=groL PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.048e-58
Identity = 108/213 (50.70%), Postives = 157/213 (73.71%), Query Frame = 3 
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A++KVG +GV+                GM+ DRGY+SP FVT+PE++    ENA +L+ D+KIS +KD++P+LE+T +   PL+IIAED+ GEALATLVVNKLRG+LN+ A+KAPGFG+RRKA+L+DIA++TG +  + ++G  +ENT+++ LG A+K+TI KD+TTII  A ++ +I  R+  ++ ++ ET S YD EKL ER+AKL GGV
Sbjct:  163 EAMEKVGKEGVITVEEAKAMETSLETVEGMQFDRGYLSPYFVTDPERMEANLENANILIHDKKISNMKDLLPVLEQTAKSGRPLVIIAEDIEGEALATLVVNKLRGVLNICAVKAPGFGDRRKAMLEDIAVLTGGKVISEEVGFKLENTTMDMLGQAKKITIDKDNTTIIDGAGAEGDIAGRVKMIRAQIEETSSDYDREKLQERLAKLVGGV 375
[Close]
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH603_SINMW (60 kDa chaperonin 3 OS=Sinorhizobium medicae (strain WSM419) GN=groL3 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.048e-58
Identity = 115/213 (53.99%), Postives = 156/213 (73.24%), Query Frame = 3 
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A++KVG +GV+                GM+ DRGY+SP FVTN +K+ VE E+  +L+ ++K+S ++ I+P+LE   Q   PLLIIAEDV GEALATLVVNKLRG L VAA+KAPGFG+RRKA+L+DIAI+TG    + DLG+++EN ++E LG A+KV+I K++TTII  A SK EI+ R AQ++ ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 EAMEKVGNEGVITVEEAKTSDTELEVVEGMQFDRGYLSPYFVTNQDKMRVELEDPYILIHEKKLSNLQSILPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVVSEDLGIMLENVTLEMLGRAKKVSIEKENTTIIDGAGSKTEIEGRTAQIRAQIEETTSDYDREKLQERLAKLAGGV 376
[Close]
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH602_RHOP5 (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain BisA53) GN=groL2 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.048e-58
Identity = 114/213 (53.52%), Postives = 156/213 (73.24%), Query Frame = 3 
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA+ KVG +GV+                GM+ DRGYISP FVTN +K+ VEF++A +L+ ++K+S + +++PLLE   Q   PL+I+AEDV GEALATLVVN+LRG L VAA+KAPGFG+RRKA+LQDIAI+TG +  + DLG+ +EN ++  LG A+KV I K++TTI+  A  K +I+AR+AQ+K ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 DAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEFDDAYILINEKKLSNLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKMENVTLAMLGKAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGV 376
[Close]
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH602_RHISN (60 kDa chaperonin 2 OS=Rhizobium sp. (strain NGR234) GN=groL2 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.048e-58
Identity = 114/213 (53.52%), Postives = 155/213 (72.77%), Query Frame = 3 
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A++KVG +GV+                GM+ DRGY+SP FVTNP+K+ VE E   VL+ ++K+S ++ ++P+LE   Q   PLLIIAEDV GEALATLVVNKLRG L VAA+KAPGFG+RRKA+L+DIAI+TG    + DLG+ +EN +++ LG A+KV + K++TTI+  A SK EI+ R+AQ+K ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 EAMEKVGNEGVITVEEAKTAVTELEVVEGMQFDRGYLSPYFVTNPDKMRVELEEPYVLIHEKKLSNLQALLPVLESVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTAISEDLGIKLENVTLDMLGRAKKVVVEKENTTIVDGAGSKTEIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGV 376
[Close]
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH601_RHOSH (60 kDa chaperonin 1 OS=Rhodobacter sphaeroides GN=groL1 PE=1 SV=4)

HSP 1 Score: 225.328 bits (573), Expect = 2.048e-58
Identity = 111/213 (52.11%), Postives = 155/213 (72.77%), Query Frame = 3 
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA+ KVG +GV+                GM+ DRGY+SP FVTN +K+  E ++  +L+ ++K+S+++ ++PLLE   Q + PLLIIAEDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+LQDIAI+TG +  + DLG+ +EN +++ LG A+K++I KD+TTI+     K EI AR+AQ++ ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 DAMQKVGNEGVITVEENKGLETEVEVVEGMQFDRGYLSPYFVTNADKMTAELDDVYILLHEKKLSSLQPMVPLLEAVIQSQKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKISINKDNTTIVDGNGDKAEIDARVAQIRNQIEETSSDYDREKLQERVAKLAGGV 376
[Close]
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH601_RHOS4 (60 kDa chaperonin 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=groL1 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.048e-58
Identity = 111/213 (52.11%), Postives = 155/213 (72.77%), Query Frame = 3 
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA+ KVG +GV+                GM+ DRGY+SP FVTN +K+  E ++  +L+ ++K+S+++ ++PLLE   Q + PLLIIAEDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+LQDIAI+TG +  + DLG+ +EN +++ LG A+K++I KD+TTI+     K EI AR+AQ++ ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 DAMQKVGNEGVITVEENKGLETEVEVVEGMQFDRGYLSPYFVTNADKMTAELDDVYILLHEKKLSSLQPMVPLLEAVIQSQKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKISINKDNTTIVDGNGDKAEIDARVAQIRNQIEETSSDYDREKLQERVAKLAGGV 376
[Close]
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH601_RHOPB (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain BisB18) GN=groL1 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.048e-58
Identity = 114/213 (53.52%), Postives = 156/213 (73.24%), Query Frame = 3 
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA+ KVG +GV+                GM+ DRGYISP FVTN +K+ VEF++A +L+ ++K+S + +++PLLE   Q   PL+I+AEDV GEALATLVVN+LRG L VAA+KAPGFG+RRKA+LQDIAI+TG +  + DLG+ +EN ++  LG A+KV I K++TTI+  A  K +I+AR+AQ+K ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 DAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEFDDAYILINEKKLSNLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKMENVTLAMLGKAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGV 376
[Close]
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH604_BRASB (60 kDa chaperonin 4 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=groL4 PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.675e-58
Identity = 113/213 (53.05%), Postives = 156/213 (73.24%), Query Frame = 3 
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA+ KVG +GV+                GM+ DRGYISP FVTN +K+ VE ++A +L+ ++K+S++ +++PLLE   Q   PL+I+AEDV GEALATLVVN+LRG L VAA+KAPGFG+RRKA+LQDIAI+TG +  + DLG+ +EN ++  LG A+KV I K++TTI+  A  K +I+AR+AQ+K ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 DAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVNLSMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGV 376
[Close]
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH602_PROMT (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain NATL2A) GN=groL2 PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.675e-58
Identity = 118/213 (55.40%), Postives = 148/213 (69.48%), Query Frame = 3 
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DAIDKV  DGV+                GM  DRGY SP FVT+ ++LI EFEN  +L+TD+KIS+I D+IP+LE   +   PL+I+AE+V GEALATLVVNK RG+L VAA++AP FGERRKA L DIA++TG    + D  + +E   +  LG AR+VTI KDSTTI+A+ A   E+  RIA +K+EL ETDS YD EKL ERIAKL+GGV
Sbjct:  162 DAIDKVSFDGVITVEESKSLATELDITEGMAFDRGYSSPYFVTDEDRLICEFENPSILITDKKISSIADLIPVLETVQKNGTPLIILAEEVEGEALATLVVNKNRGVLQVAAVRAPSFGERRKAALGDIAVLTGGTLISEDKAMSLEKVQISDLGQARRVTITKDSTTIVANEAQNTELSNRIASIKRELEETDSEYDQEKLNERIAKLAGGV 374
[Close]
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH602_BRASO (60 kDa chaperonin 2 OS=Bradyrhizobium sp. (strain ORS278) GN=groL2 PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.675e-58
Identity = 113/213 (53.05%), Postives = 156/213 (73.24%), Query Frame = 3 
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA+ KVG +GV+                GM+ DRGYISP FVTN +K+ VE ++A +L+ ++K+S++ +++PLLE   Q   PL+I+AEDV GEALATLVVN+LRG L VAA+KAPGFG+RRKA+LQDIAI+TG +  + DLG+ +EN ++  LG A+KV I K++TTI+  A  K +I+AR+AQ+K ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 DAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVNLSMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGV 376
The following BLAST results are available for this feature:
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_GEOSF2.048e-5850.7060 kDa chaperonin OS=Geobacter sp. (strain FRC-32)... [more]
CH603_SINMW2.048e-5853.9960 kDa chaperonin 3 OS=Sinorhizobium medicae (stra... [more]
CH602_RHOP52.048e-5853.5260 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH602_RHISN2.048e-5853.5260 kDa chaperonin 2 OS=Rhizobium sp. (strain NGR23... [more]
CH601_RHOSH2.048e-5852.1160 kDa chaperonin 1 OS=Rhodobacter sphaeroides GN=... [more]
CH601_RHOS42.048e-5852.1160 kDa chaperonin 1 OS=Rhodobacter sphaeroides (st... [more]
CH601_RHOPB2.048e-5853.5260 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH604_BRASB2.675e-5853.0560 kDa chaperonin 4 OS=Bradyrhizobium sp. (strain ... [more]
CH602_PROMT2.675e-5855.4060 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_BRASO2.675e-5853.0560 kDa chaperonin 2 OS=Bradyrhizobium sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00107 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00107 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623016 ID=BQ623016; Name=BQ623016; organism=Citrus sinensis; type=EST; length=641bp
CCGATGCAATTGACAAGGTTGGTCCTGATGGCGTCTTGTCAATCGAGTCA
TCATCATCATTTGAGACTACTGTTGAAGTTGAGGAAGGAATGGAGATTGA
CAGGGGTTACATCTCTCCTCAGTTTGTCACAAACCCTGAGAAATTAATTG
TTGAATTTGAGAATGCTAGAGTGCTGGTCACGGATCAAAAAATTTCAGCA
ATAAAGGATATAATTCCCTTGTTAGAGAAGACCACACAATTGAGAGCACC
ATTGCTTATAATTGCTGAGGATGTCACAGGAGAGGCTTTGGCTACGTTAG
TCGTCAACAAGCTCAGGGGCATCCTTAATGTTGCTGCCATTAAAGCTCCT
GGTTTTGGCGAAAGAAGAAAAGCTCTCCTTCAAGATATTGCCATTGTGAC
TGGAGCTGAGTTTCAAGCTGGAGACCTGGGCTTGCTTATTGAAAACACTT
CAGTTGAGCAGCTAGGTACAGCTAGAAAGGTGACCATCAGAAAGGACTCC
ACTACCATTATTGCTGATGCTGCATCAAAGGATGAAATACAAGCTAGAAT
TGCACAGCTGAAAAAGGAGTTGGCTGAGACGGATTCTGTTTATGACTCAG
AGAAACTTGCTGAGAGAATTGCTAAATTGTCTGGCGGGGTT
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