BQ623016

Overview
NameBQ623016
Unique NameBQ623016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623016_ssr48 microsatellite BQ623016_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig892 contig Csv1_Contig892:790..1430. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH604_RHIEC (60 kDa chaperonin 4 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL4 PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.494e-58
Identity = 113/213 (53.05%), Postives = 153/213 (71.83%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+ KVG DGV+                GM+ DRGY+SP FVTN +K+ VEFE+  +L+ ++K+S ++ ++P+LE   Q   PLLIIAEDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+L+DIAI+T     + DLG+ +EN ++  LG A+K+T+ K++TTII    SK+EI  RIAQ+K ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 EAVQKVGNDGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNADKMRVEFEDPYILIHEKKLSNLQSMLPILEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTAGTVISEDLGIKLENVTLNMLGRAKKITVEKENTTIIDGVGSKEEISGRIAQIKAQIEETTSDYDREKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH602_SYNY3 (60 kDa chaperonin 2 OS=Synechocystis sp. (strain PCC 6803) GN=groL2 PE=1 SV=4)

HSP 1 Score: 224.557 bits (571), Expect = 3.494e-58
Identity = 116/215 (53.95%), Postives = 155/215 (72.09%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTII--ADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA+DKV  DGV+                GM+IDRGYISP F+T+ ++ +VEF+N  +L+TD+KISAI +++P+LE   +   PLLIIAED+ GEALATLVVNK RG+LNVAAIKAP FG+RRKA+LQDIAI+TG    + D+GL ++  S++QLG A K T+ KD+T ++  AD  +   ++ RI QL+KE A +DS YD EK+ ERIAKL+GGV
Sbjct:  162 DAMDKVTKDGVITVEESKSLNTELEVVEGMQIDRGYISPYFITDSDRQLVEFDNPLILITDKKISAIAELVPVLEAVARAGRPLLIIAEDIEGEALATLVVNKARGVLNVAAIKAPAFGDRRKAVLQDIAILTGGSVISEDIGLSLDTVSLDQLGQAVKATLEKDNTILVAGADKRASAGVKERIEQLRKEYAASDSDYDKEKIQERIAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH603_RHILO (60 kDa chaperonin 3 OS=Rhizobium loti GN=groL3 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.563e-58
Identity = 110/213 (51.64%), Postives = 157/213 (73.71%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+ KVG +GV+                GM+ DRGY+SP FVTN +K++ + E+A +L+ ++K+S ++ ++P+LE   Q   PLLII+EDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+L+DIAI+TG +  + DLG+ +EN  ++ LG A+KV+I K++TTI+  A  K+EIQ R+AQ+K+++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 EAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNADKMVADLEDAYILLHEKKLSNLQAMLPVLEAVVQTSKPLLIISEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGQVISEDLGIKLENVGLDMLGRAKKVSISKENTTIVDGAGKKEEIQGRVAQIKQQIEETTSDYDKEKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH602_MESSB (60 kDa chaperonin 2 OS=Mesorhizobium sp. (strain BNC1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.563e-58
Identity = 114/212 (53.77%), Postives = 154/212 (72.64%), Query Frame = 3
Query:    6 AIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            A++KVG +GV+                GM+ DRGY+SP F+TN EK+ VE +   +L+ ++K+++++ ++P+LE   Q   PLLIIAEDV GEALATLVVNKLRG L VAA+KAPGFG+RRKA+LQDIAI+TG    + DLG+ +EN ++E LG A+KV I K++TTI+  A SKDEIQ R+ Q+K ++ ET S YD EKL ER+AKL+GGV
Sbjct:  165 AMEKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFITNQEKMRVELDEPYLLIHEKKLASLQPLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGTAISEDLGIKLENVTLEMLGRAKKVVIEKENTTIVDGAGSKDEIQGRVNQIKAQIEETTSDYDREKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH601_NITHX (60 kDa chaperonin 1 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=groL1 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.563e-58
Identity = 115/213 (53.99%), Postives = 155/213 (72.77%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA+ KVG +GV+                GM+ DRGYISP FVTN +K+ VE E+A VL+ ++K+S + +++PLLE   Q   PL+IIAEDV GEALATLVVN+LRG L VAA+KAPGFG+RRKA+LQDIAI+TG +  + DLG+ +EN ++  LG A+KV I K++TTI++ A  K +I+AR+ Q+K ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 DAMKKVGNEGVITVEEAKSLETELEIVEGMQFDRGYISPYFVTNADKMRVEMEDAYVLINEKKLSQLNELLPLLEAVVQSGKPLVIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLAMLGRAKKVMIDKENTTIVSGAGKKADIEARVNQIKAQIEETTSDYDREKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH601_MESSB (60 kDa chaperonin 1 OS=Mesorhizobium sp. (strain BNC1) GN=groL1 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.563e-58
Identity = 109/213 (51.17%), Postives = 156/213 (73.24%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+ KVG +GV+                GM+ DRGY+SP F+TNPEK++ E E+  +L+ ++K+S ++ ++P+LE   Q   PLLIIAEDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+L+DIA++TG +  + DLG+ +EN +++ LG A++V+I K++TTI+  A  K EI+ R+AQ+K ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 EAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFITNPEKMVAELEDVYILLHEKKLSNLQAMLPVLEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVSIAKETTTIVDGAGQKSEIEGRVAQIKSQIEETTSDYDREKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_RHOS1 (60 kDa chaperonin OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=groL PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 5.960e-58
Identity = 110/213 (51.64%), Postives = 155/213 (72.77%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+ KVG +GV+                GM+ DRGY+SP FVTN +K+  E ++  +L+ ++K+S+++ ++PLLE   Q + PLLIIAEDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+LQDIAI+TG +  + DLG+ +EN +++ LG A+K++I KD+TTI+     K EI AR+AQ++ ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 EAMQKVGNEGVITVEENKGLETEVEVVEGMQFDRGYLSPYFVTNADKMTAELDDVYILLHEKKLSSLQPMVPLLEAVIQSQKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKISINKDNTTIVDGNGDKAEIDARVAQIRNQIEETSSDYDREKLQERVAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_FLAPJ (60 kDa chaperonin OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=groL PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 5.960e-58
Identity = 112/213 (52.58%), Postives = 153/213 (71.83%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A  KVG +GV+                GM+ DRGY+SP FVTNPEK+  E EN  +L+ D+K+S++K+++P+LE   Q   PLLIIAEDV GEAL+TLVVNKLRG L +AA+KAPGFG+RRKA+L+DIAI+TG    + + G  +ENT++E LGTA++VTI KD+TTI++ A   D I+ R+ Q+K ++  + S YD EKL ER+AKL+GGV
Sbjct:  164 NAFAKVGKEGVITVEEAKGTDTYVDVVEGMQFDRGYLSPYFVTNPEKMDAELENPYILLYDKKVSSLKELLPVLEPVAQSGKPLLIIAEDVDGEALSTLVVNKLRGALKIAAVKAPGFGDRRKAMLEDIAILTGGTVISEERGFTLENTTIEMLGTAKRVTIDKDNTTIVSGAGEADMIKNRVNQIKGQMEASTSDYDKEKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH606_BRAJA (60 kDa chaperonin 6 OS=Bradyrhizobium japonicum GN=groL6 PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 5.960e-58
Identity = 112/213 (52.58%), Postives = 156/213 (73.24%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            DA+ KVG +GV+                GM+ DRGYISP FVTN +K+ VE ++A +L+ ++K+S++ +++PLLE   Q   PL+I+AEDV GEALATLVVN+LRG L VAA+KAPGFG+RRKA+LQDIAI+TG +  + DLG+ +EN ++  LG A+KV I K++TTI+  A  K +I+AR++Q+K ++ ET S YD EKL ER+AKL+GGV
Sbjct:  164 DAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLNMLGRAKKVMIDKENTTIVNGAGKKADIEARVSQIKAQIEETTSDYDREKLQERLAKLAGGV 376          
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Match: CH60_GRABC (60 kDa chaperonin OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=groL PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 7.784e-58
Identity = 110/213 (51.64%), Postives = 154/213 (72.30%), Query Frame = 3
Query:    3 DAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 641
            +A+ KVG +GV+                GM+ DRGY+SP F+TNPEK+I E +N  +L+ ++K++ ++ ++PLLE   Q   PLLIIAEDV GEALATLVVNKLRG L +AA+KAPGFG+RRKA+L+DIAI+TG    + DLG+ +E  +++QLGTA++V I K++TTI+  A S D+I+ R +Q++ +  ET S YD EKL ER+AKL+GGV
Sbjct:  164 EAMQKVGNEGVITVEEAKGIQTELDVVEGMQFDRGYVSPYFITNPEKMIAELDNPYILIHEKKLAQLQPLLPLLESVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLETVTLQQLGTAKRVLIEKENTTIVEGAGSPDDIKGRCSQIRAQAEETTSDYDREKLQERLAKLAGGV 376          
The following BLAST results are available for this feature:
BLAST of BQ623016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH604_RHIEC3.494e-5853.0560 kDa chaperonin 4 OS=Rhizobium etli (strain CFN ... [more]
CH602_SYNY33.494e-5853.9560 kDa chaperonin 2 OS=Synechocystis sp. (strain P... [more]
CH603_RHILO4.563e-5851.6460 kDa chaperonin 3 OS=Rhizobium loti GN=groL3 PE=... [more]
CH602_MESSB4.563e-5853.7760 kDa chaperonin 2 OS=Mesorhizobium sp. (strain B... [more]
CH601_NITHX4.563e-5853.9960 kDa chaperonin 1 OS=Nitrobacter hamburgensis (s... [more]
CH601_MESSB4.563e-5851.1760 kDa chaperonin 1 OS=Mesorhizobium sp. (strain B... [more]
CH60_RHOS15.960e-5851.6460 kDa chaperonin OS=Rhodobacter sphaeroides (stra... [more]
CH60_FLAPJ5.960e-5852.5860 kDa chaperonin OS=Flavobacterium psychrophilum ... [more]
CH606_BRAJA5.960e-5852.5860 kDa chaperonin 6 OS=Bradyrhizobium japonicum GN... [more]
CH60_GRABC7.784e-5851.6460 kDa chaperonin OS=Granulibacter bethesdensis (s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00107 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00107 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623016 ID=BQ623016; Name=BQ623016; organism=Citrus sinensis; type=EST; length=641bp
CCGATGCAATTGACAAGGTTGGTCCTGATGGCGTCTTGTCAATCGAGTCA
TCATCATCATTTGAGACTACTGTTGAAGTTGAGGAAGGAATGGAGATTGA
CAGGGGTTACATCTCTCCTCAGTTTGTCACAAACCCTGAGAAATTAATTG
TTGAATTTGAGAATGCTAGAGTGCTGGTCACGGATCAAAAAATTTCAGCA
ATAAAGGATATAATTCCCTTGTTAGAGAAGACCACACAATTGAGAGCACC
ATTGCTTATAATTGCTGAGGATGTCACAGGAGAGGCTTTGGCTACGTTAG
TCGTCAACAAGCTCAGGGGCATCCTTAATGTTGCTGCCATTAAAGCTCCT
GGTTTTGGCGAAAGAAGAAAAGCTCTCCTTCAAGATATTGCCATTGTGAC
TGGAGCTGAGTTTCAAGCTGGAGACCTGGGCTTGCTTATTGAAAACACTT
CAGTTGAGCAGCTAGGTACAGCTAGAAAGGTGACCATCAGAAAGGACTCC
ACTACCATTATTGCTGATGCTGCATCAAAGGATGAAATACAAGCTAGAAT
TGCACAGCTGAAAAAGGAGTTGGCTGAGACGGATTCTGTTTATGACTCAG
AGAAACTTGCTGAGAGAATTGCTAAATTGTCTGGCGGGGTT
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