BQ623020

Overview
NameBQ623020
Unique NameBQ623020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length480
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11002 contig Csv1_Contig11002:300..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623020 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.684e-11
Identity = 44/96 (45.83%), Postives = 57/96 (59.38%), Query Frame = 2
Query:    2 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA---GADPGAIA-----PFSFGSL---LGTQLLLMGWVESKR 256
            S PGD+GFD LGLG+ PA L+ Y+E+ELIH RWAM AV GI V +A     W +A    A PG  A     P  +G+L   L  + L + +VE +R
Sbjct:   62 SAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR 157          
BLAST of BQ623020 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.873e-11
Identity = 44/134 (32.84%), Postives = 68/134 (50.75%), Query Frame = 2
Query:    2 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG---ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLA 394
            SL GD GFDPL L +DP  L+W+ +A++++GRWAM  V G+ + +  +      A      PG    F+  S      +   +VE +RW D  NP S + +         ++++    E GYP G+ F+PL  A
Sbjct:   49 SLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMSSTYVEIRRWQDIKNPGSVNQD------PIFKSYSLPPHECGYP-GRVFNPLNFA 175          
BLAST of BQ623020 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.359e-11
Identity = 48/146 (32.88%), Postives = 73/146 (50.00%), Query Frame = 2
Query:    5 LPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGI----FVGQAW-----SGIPWFEAGADPGAIAPFSFG----SLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPL 385
            LPGD+GFDPLGL  DP     F+  KW    E+I+GR+AM    G      +G+A      + + WF+ G  P A   +++     +L   ++ LMG+ E +R+ D+  P S   ++        E     +G+  YPGG  F+PL
Sbjct:   70 LPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFL----GLEKGLGGSGDPAYPGGPLFNPL 209          
The following BLAST results are available for this feature:
BLAST of BQ623020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CB11_SOLLC1.684e-1145.83Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB120_HORVU2.873e-1132.84Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB13_SOLLC8.359e-1132.88Chlorophyll a-b binding protein 8, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00111 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00111 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623020 ID=BQ623020; Name=BQ623020; organism=Citrus sinensis; type=EST; length=480bp
TAGTCTCCCAGGTGACTACGGATTCGACCCACTTGGGCTTGGAAAGGACC
CAGCATTCCTGAAATGGTACAGAGAAGCAGAACTGATCCACGGACGATGG
GCAATGGCTGCAGTTGTTGGGATATTCGTCGGACAGGCGTGGAGTGGGAT
TCCATGGTTCGAGGCTGGAGCAGATCCTGGAGCCATAGCACCCTTCTCCT
TCGGCTCACTCCTGGGAACCCAGCTTCTCCTTATGGGTTGGGTTGAGAGC
AAGCGGTGGGTTGATTTTTTCAATCCTGAATCTCAATCAGTTGAATGGGC
AACACCTTGGTCAAGAACTGCTGAAAACTTTGCCAATGCGACTGGTGAAC
AAGGCTACCCTGGTGGAAAGTTTTTTGATCCCTTATGTTTGGCTGGAACA
ATTAAGGATGGTGTCTACATTCCTGACACTGAGAAGCTTGACAGGCCTCA
AAGTTGCTGAGATTAAACATGCTAGGCTTG
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