BQ623021

Overview
NameBQ623021
Unique NameBQ623021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length526
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2225 contig Csv1_Contig2225:326..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.775e-42
Identity = 59/71 (83.10%), Postives = 63/71 (88.73%), Query Frame = 2
Query:  110 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 322
            NINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IA +YKSDK KY   AR WTQKYAM
Sbjct:   77 NINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 147          

HSP 2 Score: 65.855 bits (159), Expect = 1.775e-42
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 1
Query:    4 DSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 108
            DS Y GGVF +T+HFP DYPFKPPK+AF TK++HP
Sbjct:   42 DSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHP 76          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.775e-42
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 2
Query:  110 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 322
            NINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ +Y   AR WTQKYAM
Sbjct:   77 NINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 147          

HSP 2 Score: 67.0106 bits (162), Expect = 1.775e-42
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 1
Query:    4 DSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 108
            +SPY GGVF +TIHFP DYPFKPPKVAF T+++HP
Sbjct:   42 ESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHP 76          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.117e-42
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 2
Query:  110 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 322
            NINSN SICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY   +R WTQKYAM
Sbjct:   77 NINSNDSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147          

HSP 2 Score: 68.9366 bits (167), Expect = 5.117e-42
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 1
Query:    1 SDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 108
            +DSPY GGVF +TIHFP DYPFKPPKVAF T+++HP
Sbjct:   41 NDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHP 76          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.605e-40
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 2
Query:  110 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 322
            N+NSNGSICLDIL+ QWSPALTISKVLLSI SLL DPNPDDPLVPEIA +YK+D+ KY  TAR WTQKYAM
Sbjct:   77 NVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQKYAM 147          

HSP 2 Score: 60.4622 bits (145), Expect = 4.605e-40
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1
Query:    1 SDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 108
            +DSPY GG F +TI FP +YPFKPPKV F T+++HP
Sbjct:   41 NDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHP 76          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.605e-40
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 2
Query:  110 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 322
            N+NSNGSICLDIL+ QWSPALTISKVLLSI SLL DPNPDDPLVPEIA +YK+D+ KY  TAR WTQKYAM
Sbjct:   77 NVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQKYAM 147          

HSP 2 Score: 60.4622 bits (145), Expect = 4.605e-40
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1
Query:    1 SDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 108
            +DSPY GG F +TI FP +YPFKPPKV F T+++HP
Sbjct:   41 NDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHP 76          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.867e-31
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 2
Query:  110 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 319
            NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y +++A+++  AR WT++YA
Sbjct:  131 NINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 200          

HSP 2 Score: 54.6842 bits (130), Expect = 1.867e-31
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 1
Query:    7 SPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFH 105
            S Y GGVF + I F PDYPFKPPKV FRT+++H
Sbjct:   97 SVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYH 129          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.867e-31
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 2
Query:  110 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 319
            NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y +++A+++  AR WT++YA
Sbjct:  131 NINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 200          

HSP 2 Score: 54.6842 bits (130), Expect = 1.867e-31
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 1
Query:    7 SPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFH 105
            S Y GGVF + I F PDYPFKPPKV FRT+++H
Sbjct:   97 SVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYH 129          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.111e-31
Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 2
Query:  110 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 319
            NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y  ++ +++  AR WT++YA
Sbjct:  162 NINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLQNREEHDRIARLWTKRYA 231          

HSP 2 Score: 56.9954 bits (136), Expect = 4.111e-31
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 1
Query:    7 SPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFH 105
            S Y GGVF + IHF P+YPFKPPKV FRT+++H
Sbjct:  128 SVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYH 160          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.376e-31
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 2
Query:  110 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 319
            NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y +++A+++  AR WT++YA
Sbjct:  123 NINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 192          

HSP 2 Score: 53.1434 bits (126), Expect = 5.376e-31
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 1
Query:    7 SPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFH 105
            S Y GGVF + I F P+YPFKPPKV FRT+++H
Sbjct:   89 SVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYH 121          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.376e-31
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 2
Query:  110 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 319
            NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y +++A+++  AR WT++YA
Sbjct:  123 NINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 192          

HSP 2 Score: 53.1434 bits (126), Expect = 5.376e-31
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 1
Query:    7 SPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFH 105
            S Y GGVF + I F P+YPFKPPKV FRT+++H
Sbjct:   89 SVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYH 121          
The following BLAST results are available for this feature:
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
UB2D1_BOVIN1.775e-4283.10Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBC2_CAEEL1.775e-4281.69Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UB2D3_BOVIN5.117e-4280.28Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
U2D2B_RAT4.605e-4081.69Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE4.605e-4081.69Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UB2E2_MOUSE1.867e-3168.57Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]
UB2E2_HUMAN1.867e-3168.57Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]
UBCD2_DROME4.111e-3167.14Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
UB2E1_MOUSE5.376e-3168.57Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]
UB2E1_HUMAN5.376e-3168.57Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00112 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00112 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623021 ID=BQ623021; Name=BQ623021; organism=Citrus sinensis; type=EST; length=526bp
TCTGATAGCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCC
TCCTGATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCT
TCCACCCTGAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTTAA
AGAACAGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCT
GCTCCTTGCTTACTGATCCAAATCCCGACGACCCTCTTGTACCGGAGATT
GCCCACATGTACAAGTCCGACAAGGCCAAATATGAATCCACGGCCAGGAG
CTGGACACAGAAGTATGCCATGGGATGAAGGTTGTTAGGATATTGCAGAA
AAAGGAGCATTTATTGAAATATGTTGTGTGTGTTGTCTATCTATTTTCTT
TAACTTGCTTTGGGGAGGGCAGACGTTGGTGTTTTAGAATGGTGTTGGGA
GGAGTTGCAAGGGCGGGACGTTTTTATGTTAATGTTGAATGTTTGTGTTT
GAAGCTTCTTCGATGGAACGTAGTTA
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