BQ623021

Overview
NameBQ623021
Unique NameBQ623021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length526
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2225 contig Csv1_Contig2225:326..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.331e-19
Identity = 35/71 (49.30%), Postives = 43/71 (60.56%), Query Frame = 2
Query:  110 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTAR-----SWT 307
            NI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A MY   K +Y    R     SWT
Sbjct:   80 NIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150          

HSP 2 Score: 44.669 bits (104), Expect = 4.331e-19
Identity = 17/35 (48.57%), Postives = 25/35 (71.43%), Query Frame = 1
Query:    4 DSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 108
            D+P+ GG F +++ F  DYP KPP V F +++FHP
Sbjct:   45 DTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHP 79          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 64.6994 bits (156), Expect = 7.247e-19
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 2
Query:  110 NINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 325
            NI+S  G+ICLDILK+ W+ A+T+  VLLS+ +LL    PDDP    +A+ +K     +  TA+ WT  YA G
Sbjct:   83 NISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKDKYDLFLLTAKHWTNAYAGG 155          

HSP 2 Score: 48.9062 bits (115), Expect = 7.247e-19
Identity = 19/35 (54.29%), Postives = 25/35 (71.43%), Query Frame = 1
Query:    4 DSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 108
            D+PY GG F++ I  P  YPF PPKV F T+++HP
Sbjct:   48 DTPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHP 82          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.243e-19
Identity = 35/74 (47.30%), Postives = 50/74 (67.57%), Query Frame = 2
Query:  110 NINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 319
            NI+++G ICLDIL    K  W P+L IS VL S+  LL++PNPDD L+ E++  YK ++  ++  AR  T+KYA
Sbjct:   91 NIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKAREMTEKYA 164          

HSP 2 Score: 44.2838 bits (103), Expect = 9.243e-19
Identity = 17/35 (48.57%), Postives = 24/35 (68.57%), Query Frame = 1
Query:    4 DSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 108
            D+ YA G+F + I  P  YPF+PP V+F T ++HP
Sbjct:   56 DTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHP 90          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.529e-19
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 2
Query:  110 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----ESTARSWT 307
            NI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+  +K +Y     E   +SWT
Sbjct:   80 NIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREVVEQSWT 150          

HSP 2 Score: 44.669 bits (104), Expect = 9.529e-19
Identity = 17/35 (48.57%), Postives = 25/35 (71.43%), Query Frame = 1
Query:    4 DSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 108
            D+P+ GG F +++ F  DYP KPP V F +++FHP
Sbjct:   45 DTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHP 79          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.224e-18
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 2
Query:  110 NINSNGSICLDILK----EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 319
            NI+S+G ICLDILK      W P+L I+ VL SI  L+ +PNPDDPL+ +I+  +K +K  +   A+ WT+ +A
Sbjct:   78 NIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMAEPNPDDPLMADISSEFKYNKIAFLKKAKQWTEAHA 151          

HSP 2 Score: 43.5134 bits (101), Expect = 1.224e-18
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 1
Query:    1 SDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 108
            +++PY  GVF + +  P  YPF+PP+V F T ++HP
Sbjct:   42 ANTPYEKGVFTLEVIIPERYPFEPPQVRFLTPIYHP 77          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.239e-18
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 2
Query:  110 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----ESTARSWT 307
            NI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+   K +Y     E   +SWT
Sbjct:   80 NIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVREVVEQSWT 150          

HSP 2 Score: 44.669 bits (104), Expect = 1.239e-18
Identity = 17/35 (48.57%), Postives = 25/35 (71.43%), Query Frame = 1
Query:    4 DSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 108
            D+P+ GG F +++ F  DYP KPP V F +++FHP
Sbjct:   45 DTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHP 79          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 1.613e-18
Identity = 28/68 (41.18%), Postives = 45/68 (66.18%), Query Frame = 2
Query:  110 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQK 313
            N+ ++G ICLDIL+ +WSP   +S +L SI SLL+DPNP+ P     A +YK ++ +YE   ++  ++
Sbjct:   80 NVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVKACVEQ 147          

HSP 2 Score: 45.8246 bits (107), Expect = 1.613e-18
Identity = 19/35 (54.29%), Postives = 24/35 (68.57%), Query Frame = 1
Query:    4 DSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 108
            D+P+  G F +TI F  +YP KPP V F +KVFHP
Sbjct:   45 DTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHP 79          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UB2L3_PONAB (Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 2.096e-18
Identity = 25/70 (35.71%), Postives = 41/70 (58.57%), Query Frame = 2
Query:  110 NINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKY 316
            NI+  G +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  D+ K+   A  +T+KY
Sbjct:   78 NIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          

HSP 2 Score: 53.5286 bits (127), Expect = 2.096e-18
Identity = 19/33 (57.58%), Postives = 26/33 (78.79%), Query Frame = 1
Query:   10 PYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 108
            PY  G F + I+FP +YPFKPPK+ F+TK++HP
Sbjct:   45 PYDKGAFRIEINFPAEYPFKPPKITFKTKIYHP 77          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UB2L3_MOUSE (Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus GN=Ube2l3 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 2.096e-18
Identity = 25/70 (35.71%), Postives = 41/70 (58.57%), Query Frame = 2
Query:  110 NINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKY 316
            NI+  G +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  D+ K+   A  +T+KY
Sbjct:   78 NIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          

HSP 2 Score: 53.5286 bits (127), Expect = 2.096e-18
Identity = 19/33 (57.58%), Postives = 26/33 (78.79%), Query Frame = 1
Query:   10 PYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 108
            PY  G F + I+FP +YPFKPPK+ F+TK++HP
Sbjct:   45 PYDKGAFRIEINFPAEYPFKPPKITFKTKIYHP 77          
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Match: UB2L3_HUMAN (Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens GN=UBE2L3 PE=1 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 2.096e-18
Identity = 25/70 (35.71%), Postives = 41/70 (58.57%), Query Frame = 2
Query:  110 NINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKY 316
            NI+  G +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  D+ K+   A  +T+KY
Sbjct:   78 NIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          

HSP 2 Score: 53.5286 bits (127), Expect = 2.096e-18
Identity = 19/33 (57.58%), Postives = 26/33 (78.79%), Query Frame = 1
Query:   10 PYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 108
            PY  G F + I+FP +YPFKPPK+ F+TK++HP
Sbjct:   45 PYDKGAFRIEINFPAEYPFKPPKITFKTKIYHP 77          
The following BLAST results are available for this feature:
BLAST of BQ623021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
UBC1_ARATH4.331e-1949.30Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBCD4_DROME7.247e-1945.21Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UBC37_ARATH9.243e-1947.30Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]
UBC2_MEDSA9.529e-1947.89Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBE2T_MOUSE1.224e-1845.95Ubiquitin-conjugating enzyme E2 T OS=Mus musculus ... [more]
UBC2_ARATH1.239e-1847.89Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBCD6_DROME1.613e-1841.18Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UB2L3_PONAB2.096e-1835.71Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii... [more]
UB2L3_MOUSE2.096e-1835.71Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus... [more]
UB2L3_HUMAN2.096e-1835.71Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00112 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00112 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623021 ID=BQ623021; Name=BQ623021; organism=Citrus sinensis; type=EST; length=526bp
TCTGATAGCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCC
TCCTGATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCT
TCCACCCTGAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTTAA
AGAACAGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCT
GCTCCTTGCTTACTGATCCAAATCCCGACGACCCTCTTGTACCGGAGATT
GCCCACATGTACAAGTCCGACAAGGCCAAATATGAATCCACGGCCAGGAG
CTGGACACAGAAGTATGCCATGGGATGAAGGTTGTTAGGATATTGCAGAA
AAAGGAGCATTTATTGAAATATGTTGTGTGTGTTGTCTATCTATTTTCTT
TAACTTGCTTTGGGGAGGGCAGACGTTGGTGTTTTAGAATGGTGTTGGGA
GGAGTTGCAAGGGCGGGACGTTTTTATGTTAATGTTGAATGTTTGTGTTT
GAAGCTTCTTCGATGGAACGTAGTTA
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