BQ623024

Overview
NameBQ623024
Unique NameBQ623024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623024_ssr557 microsatellite BQ623024_ssr557:557..568. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13714 contig Csv1_Contig13714:506..1109. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623024 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15
Identity = 42/96 (43.75%), Postives = 58/96 (60.42%), Query Frame = 3
Query:  141 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSS-----GKFLRRFRLPDNAKVEQVKASMENGVLTV 413
            + A IDW E+  +H+FK ++PG            G +L I GE  KE++++N  WH  ER +      +FLRR  LP+N KV+QVKA +ENGVLTV
Sbjct:   20 STALIDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENGVLTV 115          
BLAST of BQ623024 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.273e-15
Identity = 51/125 (40.80%), Postives = 67/125 (53.60%), Query Frame = 3
Query:   57 LDVWDPFDGFLSSALTNAPSSA-----RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 416
            LDV D   G      T +  SA     R+    A    D KE P A+ F  D+PGL            R+L +SGER +E+ E + K+ R+ER  GKF+R+F LPDNA V++V A   +GVLTVT
Sbjct:   20 LDVPDGDAGAGGDNKTGSGGSATRTYVRDARAMAATPADVKELPGAYAFVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVT 144          
BLAST of BQ623024 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.244e-14
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 3
Query:  105 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 416
            NAP+    R+    A    D KE P ++VF  D+PG++            +L ISGER +E+E++  K+ ++ER  GK +R+F LP+NA +E + A  ++GVLTVT
Sbjct:   27 NAPTRTYVRDAKAMAATPADVKEHPNSYVFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVLTVT 132          
BLAST of BQ623024 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.771e-14
Identity = 40/106 (37.74%), Postives = 65/106 (61.32%), Query Frame = 3
Query:  105 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 416
            + PS A  R+    A    D KE P ++VF  D+PGL+            +L ISG+R++E+E++  K+ R+ER  GKF+++F LP++A  +++ A  ++GVLTVT
Sbjct:   35 SGPSRAYVRDARAMAATPADVKECPNSYVFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDGVLTVT 140          
BLAST of BQ623024 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.771e-14
Identity = 45/111 (40.54%), Postives = 66/111 (59.46%), Query Frame = 3
Query:  102 TNAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSK----EQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 416
            T  P+ A  R+    A    D K+ P A+ F  D+PGL+           R+L ISGER +    E++E++ K+ R+ER  GKF+R+F LPDNA V+++ A  ++GVLTVT
Sbjct:   36 TGGPTRAYVRDARAMAATPADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVT 146          
BLAST of BQ623024 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.726e-14
Identity = 42/115 (36.52%), Postives = 65/115 (56.52%), Query Frame = 3
Query:   78 DGFLSSALTNAP--SSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 416
            DG   +   NAP  S  R+    A    D KE P ++VF+ D+PGL+            +L I GER +++E++  K+ R+ER  GK +R+F LP+NA  + + A  ++GVL+VT
Sbjct:   25 DGAGDNKTHNAPTWSYVRDAKAMAATPADVKEYPNSYVFEIDMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDGVLSVT 139          
BLAST of BQ623024 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.375e-13
Identity = 45/111 (40.54%), Postives = 64/111 (57.66%), Query Frame = 3
Query:   93 SALTNAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 416
            S+ ++APS     +    A    D KE P ++VF  D+PGL+            +L ISGER +E EEK   K+ R+ER  GK +R+F LP+NA  E++ A  ++GVLTVT
Sbjct:   25 SSNSSAPSRTFMLDAKAMAATPADVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLTVT 135          
BLAST of BQ623024 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.796e-13
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:  123 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKND--KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 416
            R+    A    D KE P ++VF AD+PG++            +L +SGER++ ++++ D  K+ R+ER  GKF+R+F LP+NA VE + A  ++GVL VT
Sbjct:   48 RDAKAMAATPADVKEYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVLQVT 147          
BLAST of BQ623024 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.001e-13
Identity = 43/98 (43.88%), Postives = 57/98 (58.16%), Query Frame = 3
Query:  123 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 416
            R+    A    D KE   A+ F  D+PGL            R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDNA V++V A   +GVLTVT
Sbjct:   38 RDARAMAATPADVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVT 134          
BLAST of BQ623024 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.001e-13
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  156 DWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 416
            D KE P A+ F  D+PGL            R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDNA ++++ A   +GVLTVT
Sbjct:   56 DVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVT 141          
The following BLAST results are available for this feature:
BLAST of BQ623024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS157_ARATH1.125e-1543.7515.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]
HSP22_MAIZE3.273e-1540.8017.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP21_PEA1.244e-1438.6817.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP21_HELAN2.771e-1437.7417.9 kDa class II heat shock protein OS=Helianthus... [more]
HSP18_ORYSJ2.771e-1440.5418.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP21_SOYBN4.726e-1436.5217.9 kDa class II heat shock protein OS=Glycine ma... [more]
HSP21_IPONI1.375e-1340.5417.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP22_IPONI1.796e-1339.0018.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP23_MAIZE4.001e-1343.8817.0 kDa class II heat shock protein OS=Zea mays G... [more]
HSP21_MAIZE4.001e-1345.9817.5 kDa class II heat shock protein OS=Zea mays P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00115 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00115 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623024 ID=BQ623024; Name=BQ623024; organism=Citrus sinensis; type=EST; length=605bp
CACTCATTCCAAGCATCTTCGGTGGCCGAAGAACCAACGTGTTCGATCCA
GTTTCATTAGATGTATGGGATCCTTTCGACGGGTTCTTGTCCTCTGCCCT
TACCAACGCGCCGTCTTCGGCTAGGGAAACATCCCAATTCGCCAATGCAA
GAATTGACTGGAAAGAGACTCCTCAGGCTCACGTATTCAAAGCTGATCTT
CCAGGGCTGAGGAAAGAAGAAGTAAAAGTTGAGGTTGAAGAGGGCAGGAT
TCTGCAGATAAGCGGAGAGAGGAGCAAGGAGCAGGAAGAGAAGAATGACA
AGTGGCATCGCGTCGAGAGGAGCAGTGGCAAGTTCCTGAGGAGGTTCAGG
TTGCCCGACAATGCTAAGGTGGAACAGGTTAAGGCCAGCATGGAGAATGG
TGTGCTCACAGTCACCGTTCCTAAACAGGAGGAGAAGAAACCTGAAGTTA
AGGCTATTGAGATCTCTGGCTAAGTGATAACTGTAAATGTTTTCAAGATA
GTGTCTTTGGTTTGCTAATAAATTTGGTACGAAAGCAAAGCCCTTGTGTG
TTTGTATGTGTGTGTGTGTTTGGTTTTCTTCCCTTCCCCCTGTTTAATTT
GATGT
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