BQ623027

Overview
NameBQ623027
Unique NameBQ623027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2414 contig Csv1_Contig2414:102..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623027 vs. ExPASy Swiss-Prot
Match: LADH_METM5 (Lactaldehyde dehydrogenase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_0090 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.308e-18
Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = 1
Query:    1 GPVLPVIRINSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVIN 282
            GPVLP++++   EE +   N S +GLQ  VFT DINKA+ I+D++E G + INS+P+   D+ PF G+K SG+G +GI  ++  M + K+ VI+
Sbjct:  370 GPVLPILKVKDSEEAVSIANNSKYGLQAGVFTNDINKAMKIADSLEYGGIMINSSPTFRKDNMPFGGVKKSGLGREGIKYTVEEMCETKTIVIH 463          
BLAST of BQ623027 vs. ExPASy Swiss-Prot
Match: LADH_METMP (Lactaldehyde dehydrogenase OS=Methanococcus maripaludis GN=MMP1487 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.490e-16
Identity = 38/94 (40.43%), Postives = 63/94 (67.02%), Query Frame = 1
Query:    1 GPVLPVIRINSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVIN 282
            GP+LP++ +   EE ++  N S +GLQ  +FT +IN A+ I+D +E G + INS+P+   D+ PF G+K SG+G +GI  ++  M++ K+ VI+
Sbjct:  370 GPILPILTVKDSEEAVNIANNSKYGLQAGLFTNNINNAMKIADELEYGGIMINSSPTFRKDNMPFGGVKKSGLGREGIKYTVEEMSETKTVVIH 463          
BLAST of BQ623027 vs. ExPASy Swiss-Prot
Match: LADH_METVS (Lactaldehyde dehydrogenase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=Mevan_0796 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.597e-15
Identity = 36/94 (38.30%), Postives = 60/94 (63.83%), Query Frame = 1
Query:    1 GPVLPVIRINSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVIN 282
            GP+LP+++    E  ++  N S +GLQ  +FT DINKA+  ++ +E G V +N +P+   D+ PF G+K SG+G +GI  ++  M + K+ VI+
Sbjct:  370 GPILPILKAKDDEHALNIANNSKYGLQAGIFTNDINKAMKFANKLEYGGVIVNGSPTFRKDNMPFGGIKKSGLGKEGIKYAVEEMCETKTVVIH 463          
BLAST of BQ623027 vs. ExPASy Swiss-Prot
Match: LADH_METJA (Lactaldehyde dehydrogenase OS=Methanocaldococcus jannaschii GN=MJ1411 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.047e-13
Identity = 36/93 (38.71%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    4 PVLPVIRINSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVIN 282
            PV+P+IR N  EE I   N++ +GL   +FT DINK++  ++ +E G V IN +     D+ PF G+K SG+G +G+  ++  M+ IK+ +I+
Sbjct:  371 PVIPIIRTNE-EEMIDIANSTEYGLHSAIFTNDINKSLKFAENLEFGGVVINDSSLFRQDNMPFGGVKKSGLGREGVKYAMEEMSNIKTIIIS 462          
BLAST of BQ623027 vs. ExPASy Swiss-Prot
Match: AL1A2_CHICK (Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A2 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.897e-12
Identity = 38/96 (39.58%), Postives = 55/96 (57.29%), Query Frame = 1
Query:    1 GPVLPVIRINSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVINLP 288
            GPV  ++R  +V+E I   N S+FGL   VFT DINKA+ +S AM+ GTV IN   +      PF G K SG G +   + +   +++K+  I +P
Sbjct:  420 GPVQEILRFKTVDEVIERANNSDFGLVAAVFTNDINKALTVSSAMQAGTVWINCYNALNAQS-PFGGFKMSGNGREMGESGLREYSEVKTVTIKIP 514          
BLAST of BQ623027 vs. ExPASy Swiss-Prot
Match: AL1B1_MOUSE (Aldehyde dehydrogenase X, mitochondrial OS=Mus musculus GN=Aldh1b1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11
Identity = 35/96 (36.46%), Postives = 56/96 (58.33%), Query Frame = 1
Query:    1 GPVLPVIRINSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVINLP 288
            GPV P+ +   +EE I   N + +GL   VFTRD++KAI  + A++ GTV +N+  +    H PF G K+SG G +   + +   T++K+  I +P
Sbjct:  421 GPVQPLFKFKKIEEVIQRANNTRYGLAAAVFTRDLDKAIYFTQALQAGTVWVNTY-NIVTCHTPFGGFKESGNGRELGEDGLRAYTEVKTVTIKVP 515          
BLAST of BQ623027 vs. ExPASy Swiss-Prot
Match: AL1B1_PONAB (Aldehyde dehydrogenase X, mitochondrial OS=Pongo abelii GN=ALDH1B1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 34/96 (35.42%), Postives = 56/96 (58.33%), Query Frame = 1
Query:    1 GPVLPVIRINSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVINLP 288
            GPV P+ +   +EE I   N + +GL   VFTRD++KA+  + A++ GTV +N+  +    H PF G K+SG G +   + +   T++K+  I +P
Sbjct:  419 GPVQPLFKFKKMEEVIERANTTRYGLAAAVFTRDLDKAMYFTQALQAGTVWVNTY-NIVTCHTPFGGFKESGNGRELGEDGLKAYTEVKTVTIKVP 513          
BLAST of BQ623027 vs. ExPASy Swiss-Prot
Match: AL1A2_RAT (Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 36/96 (37.50%), Postives = 55/96 (57.29%), Query Frame = 1
Query:    1 GPVLPVIRINSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVINLP 288
            GPV  ++R  +++E I   N S+FGL   VFT DINKA+++S AM+ GTV IN   +      PF G K SG G +     +   +++K+  + +P
Sbjct:  420 GPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALMVSSAMQAGTVWINCYNALNAQS-PFGGFKMSGNGREMGEFGLREYSEVKTVTVKIP 514          
BLAST of BQ623027 vs. ExPASy Swiss-Prot
Match: AL1A2_MOUSE (Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 36/96 (37.50%), Postives = 55/96 (57.29%), Query Frame = 1
Query:    1 GPVLPVIRINSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVINLP 288
            GPV  ++R  +++E I   N S+FGL   VFT DINKA+++S AM+ GTV IN   +      PF G K SG G +     +   +++K+  + +P
Sbjct:  420 GPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALMVSSAMQAGTVWINCYNALNAQS-PFGGFKMSGNGREMGEFGLREYSEVKTVTVKIP 514          
BLAST of BQ623027 vs. ExPASy Swiss-Prot
Match: AL1B1_HUMAN (Aldehyde dehydrogenase X, mitochondrial OS=Homo sapiens GN=ALDH1B1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 33/96 (34.38%), Postives = 56/96 (58.33%), Query Frame = 1
Query:    1 GPVLPVIRINSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVINLP 288
            GPV P+ +   +EE +   N + +GL   VFTRD++KA+  + A++ GTV +N+  +    H PF G K+SG G +   + +   T++K+  I +P
Sbjct:  419 GPVQPLFKFKKIEEVVERANNTRYGLAAAVFTRDLDKAMYFTQALQAGTVWVNTY-NIVTCHTPFGGFKESGNGRELGEDGLKAYTEVKTVTIKVP 513          
The following BLAST results are available for this feature:
BLAST of BQ623027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
LADH_METM58.308e-1844.68Lactaldehyde dehydrogenase OS=Methanococcus maripa... [more]
LADH_METMP3.490e-1640.43Lactaldehyde dehydrogenase OS=Methanococcus maripa... [more]
LADH_METVS8.597e-1538.30Lactaldehyde dehydrogenase OS=Methanococcus vannie... [more]
LADH_METJA8.047e-1338.71Lactaldehyde dehydrogenase OS=Methanocaldococcus j... [more]
AL1A2_CHICK8.897e-1239.58Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A... [more]
AL1B1_MOUSE1.518e-1136.46Aldehyde dehydrogenase X, mitochondrial OS=Mus mus... [more]
AL1B1_PONAB3.381e-1135.42Aldehyde dehydrogenase X, mitochondrial OS=Pongo a... [more]
AL1A2_RAT3.381e-1137.50Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Al... [more]
AL1A2_MOUSE3.381e-1137.50Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2... [more]
AL1B1_HUMAN4.415e-1134.38Aldehyde dehydrogenase X, mitochondrial OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00118 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00118 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623027 ID=BQ623027; Name=BQ623027; organism=Citrus sinensis; type=EST; length=662bp
GGTCCTGTTCTGCCAGTTATTAGGATAAACTCGGTCGAAGAAGGAATCCA
CCATTGTAATGCTAGCAACTTTGGTCTTCAGGGATGTGTATTTACTAGGG
ATATAAACAAAGCAATTTTAATCAGTGACGCGATGGAAACAGGAACGGTT
CAGATTAATTCAGCTCCGTCTCGTGGACCTGATCATTTTCCTTTCCAGGG
CTTAAAGGACAGCGGAATTGGTTCACAGGGAATCACCAATAGCATCAATA
TGATGACGAAAATCAAGAGCACTGTAATCAATTTACCAACCCCGTCTTAC
ACCGTAGGTTGATGATAATTAATAGGAGCATCGAGCTACACTCACCTTAT
AGAGTACATGTTATCTATCTACCTAGAGTATATAACTGGCAAAATAAAAT
CACTGTATGTTATCTTCCTTGCCTTCACGGGCAAGTAATCGGCACTTGCA
TGTACCCACAAGTTTCTTGTGGTTATCTTATTGTTTAAATTGGCTCTGGT
TATATAAGTAAAGATGATGGAGTGTTATTTGATTTTTTTTTTTTTTCAAA
TTGAATTTATGGTAAGGTATTTGTAATTATAGCTGCCCCTACTTTATTGG
GATTCTTTCCATATGTAACAACACCATGCAGGGATAAGATCATTGAGGAA
ACAAAGGTTATG
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