BQ623027

Overview
NameBQ623027
Unique NameBQ623027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2414 contig Csv1_Contig2414:102..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623027 vs. ExPASy Swiss-Prot
Match: AL1B1_RAT (Aldehyde dehydrogenase X, mitochondrial OS=Rattus norvegicus GN=Aldh1b1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 34/95 (35.79%), Postives = 55/95 (57.89%), Query Frame = 1 
Query:    1 GPVLPVIRINSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVINL 285
            GPV P+ +   +EE I   N + +GL   VFTRD++KA+  S A++ GTV +N+  +    H PF G K+SG G +   + +   T++K+  I +
Sbjct:  421 GPVQPLFKFKKIEEVIQRANNTRYGLAAAVFTRDLDKALYFSQALQAGTVWVNTY-NIVTCHTPFGGFKESGNGRELGEDGLKAYTEVKTVTIKV 514
[Close]
BLAST of BQ623027 vs. ExPASy Swiss-Prot
Match: AL1A2_HUMAN (Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:    1 GPVLPVIRINSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVINLP 288
            GPV  ++R  +++E I   N S+FGL   VFT DINKA+ +S AM+ GTV IN   +      PF G K SG G +     +   +++K+  + +P
Sbjct:  420 GPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALTVSSAMQAGTVWINCYNALNAQS-PFGGFKMSGNGREMGEFGLREYSEVKTVTVKIP 514
The following BLAST results are available for this feature:
BLAST of BQ623027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
AL1B1_RAT7.531e-1135.79Aldehyde dehydrogenase X, mitochondrial OS=Rattus ... [more]
AL1A2_HUMAN7.531e-1137.50Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00118 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00118 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623027 ID=BQ623027; Name=BQ623027; organism=Citrus sinensis; type=EST; length=662bp
GGTCCTGTTCTGCCAGTTATTAGGATAAACTCGGTCGAAGAAGGAATCCA
CCATTGTAATGCTAGCAACTTTGGTCTTCAGGGATGTGTATTTACTAGGG
ATATAAACAAAGCAATTTTAATCAGTGACGCGATGGAAACAGGAACGGTT
CAGATTAATTCAGCTCCGTCTCGTGGACCTGATCATTTTCCTTTCCAGGG
CTTAAAGGACAGCGGAATTGGTTCACAGGGAATCACCAATAGCATCAATA
TGATGACGAAAATCAAGAGCACTGTAATCAATTTACCAACCCCGTCTTAC
ACCGTAGGTTGATGATAATTAATAGGAGCATCGAGCTACACTCACCTTAT
AGAGTACATGTTATCTATCTACCTAGAGTATATAACTGGCAAAATAAAAT
CACTGTATGTTATCTTCCTTGCCTTCACGGGCAAGTAATCGGCACTTGCA
TGTACCCACAAGTTTCTTGTGGTTATCTTATTGTTTAAATTGGCTCTGGT
TATATAAGTAAAGATGATGGAGTGTTATTTGATTTTTTTTTTTTTTCAAA
TTGAATTTATGGTAAGGTATTTGTAATTATAGCTGCCCCTACTTTATTGG
GATTCTTTCCATATGTAACAACACCATGCAGGGATAAGATCATTGAGGAA
ACAAAGGTTATG
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