BQ623043

Overview
NameBQ623043
Unique NameBQ623043
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12945 contig Csv1_Contig12945:96..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623043 vs. ExPASy Swiss-Prot
Match: RLA0_PODAN (60S acidic ribosomal protein P0 OS=Podospora anserina PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 47/178 (26.40%), Postives = 85/178 (47.75%), Query Frame = 2
Query:   23 NSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRFFL-GSNKVMQVALGRSVSDEIQPGLHKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEP----FLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATF 541
            + ++  +E YKSI++ S +N+ + +  E R+ ++     L G N +++ AL   + D   P   ++  F+ GN G   TN   +E+       +    AR G+ A   V +P G        MEP    F +  G+P ++ +G +E+ +D  + E G  + P  A +L +L I   T+
Sbjct:   13 DKLKGLLEEYKSIFIVSVDNVSSQQMHEIRQALRDQGVVLMGKNTMVRRALKTFLVD--SPEYERLLPFVKGNVGFVFTNGDLKEIRDKILANKVAAPARAGAVAPVDVWIPAG-----NTGMEPGKTSFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEATLLNMLNISPFTY 183          
BLAST of BQ623043 vs. ExPASy Swiss-Prot
Match: RLA0_THEON (Acidic ribosomal protein P0 homolog OS=Thermococcus onnurineus (strain NA1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 44/189 (23.28%), Postives = 89/189 (47.09%), Query Frame = 2
Query:    2 EHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRFF-LGSNKVMQVALGRSVSDEIQPGLHKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRW 565
            E K+  V  + N +++Y  I +    N+      + RE+++      +  N ++++A+ R+  +  +P L K+   + G  G+  T M   ++  L  + +    A+ G      V +P GP       +   ++  G+P R+ KG V +  D+ V + G+ ++ + ARIL  LGI+     L+L+  +
Sbjct:    6 EWKKKEVEELTNIIKSYPVIALVDVANVPAYPLSKMREKLRGKALLRVSRNTLIELAIKRAAQELGKPELEKLIDHIQGGAGILATEMNPFKLYKLLEESKTPAPAKPGVPVPRDVVIPAGPTSISPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAY 194          
BLAST of BQ623043 vs. ExPASy Swiss-Prot
Match: RLA0_PYRFU (Acidic ribosomal protein P0 homolog OS=Pyrococcus furiosus GN=rplP0 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 49/209 (23.44%), Postives = 97/209 (46.41%), Query Frame = 2
Query:    2 EHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRFFL--GSNKVMQVALGRSVSDEIQPGLHKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYRE---GLDESD 613
            E K+  V  + N +++Y  + +    +M      + R  I+ +   L    N ++++A+ +   +  +P L K+  ++ G  G+ +T M   ++     +      A+ G+   + V +P GP       +   ++  G+P R+ +G V +  D VV + G+ ++PE A IL  LGI+     L L+  +  ED  +Y      +DES+
Sbjct:    6 EWKKKEVEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLINYIEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPGAKVPKDVVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEEITPELANILNALGIQPLEVGLDLLAVY--EDGIIYTPDVLAIDESE 212          
BLAST of BQ623043 vs. ExPASy Swiss-Prot
Match: RLA0_PYRKO (Acidic ribosomal protein P0 homolog OS=Pyrococcus kodakaraensis GN=rplP0 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 48/208 (23.08%), Postives = 98/208 (47.12%), Query Frame = 2
Query:    2 EHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRFF-LGSNKVMQVALGRSVSDEIQPGLHKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYRE---GLDESD 613
            E K+  V  + N +++Y  I +     +      + R++++      +  N ++++A+ R+  +  QP L K+   + G   +  T M   ++  L  + +    A+ G+   + V +P GP       +   ++  G+P R+ KG V +  D+ V + G+ ++ + ARIL  LGI+     L+L+  +  ED  +Y      +DES+
Sbjct:    6 EWKKKEVEELANIIKSYPVIALVDVAGVPAYPLSKMRDKLRGKALLRVSRNTLIELAIKRAAQELGQPELEKLIDHIQGGAAILATEMNPFKLYKLLEESKTPAPAKAGAVVPKDVVIPAGPTSLAPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAY--EDGIVYTPDVLAIDESE 211          
The following BLAST results are available for this feature:
BLAST of BQ623043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RLA0_PODAN1.674e-1126.4060S acidic ribosomal protein P0 OS=Podospora anser... [more]
RLA0_THEON4.869e-1123.28Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]
RLA0_PYRFU4.869e-1123.44Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_PYRKO6.359e-1123.08Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00134 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00134 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623043 ID=BQ623043; Name=BQ623043; organism=Citrus sinensis; type=EST; length=695bp
GGAACACAAAGAAGTAATAGTAAATTCCATAAGGAATGCAGTTGAAAATT
ACAAATCAATTTACGTTTTCTCTTTTGAGAACATGAGAAATCTCAAGTTC
AAAGAGTTCAGAGAGCAGATCAAACCAAGCAGATTTTTTCTGGGGTCAAA
TAAAGTCATGCAGGTTGCTCTGGGTCGGTCGGTATCCGATGAGATACAGC
CAGGCCTTCACAAAGTTTCTAAGTTTCTCTGTGGAAATACTGGACTTTTT
CTTACAAATATGCCCAAGGAAGAGGTTGAAAGCTTGTTTAATAAATATGA
AGACTATGACTTTGCAAGGACAGGAAGCACGGCAACAGAAAAGGTGGAAC
TTCCAGAAGGTCCTCTGGAACAGTTCACACATGAAATGGAGCCATTTTTG
CGCAAACAAGGGATGCCTGTTCGGTTGAACAAAGGTGTGGTGGAACTTGT
TTCAGATTTTGTTGTTTGCGAAGAAGGAAAGCCTCTGTCACCTGAGTCAG
CTCGAATACTGCGATTGCTGGGCATCAAGATGGCTACCTTCAAACTTCAC
TTAATCTGCAGATGGAGTGCTGAGGATTTTGAACTTTACAGAGAAGGACT
TGATGAGTCGGACGTTGAATCTGCATGAGGCAATTATGCTGATTCATCTA
AATTTTGGAGTTTAATGCCCCAGTGTGCTTGAAAATATTGATACC
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