BQ623044

Overview
NameBQ623044
Unique NameBQ623044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length372
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623044_ssr1 microsatellite BQ623044_ssr1:1..12. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12813 contig Csv1_Contig12813:131..502. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623044 vs. ExPASy Swiss-Prot
Match: AMPM_CHLPN (Methionine aminopeptidase OS=Chlamydia pneumoniae GN=map PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.704e-15
Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 2
Query:   53 NRFVGHGVGKVFHSEPIIYHNRNENPGCMVEGQTFTIEPILTMGSIECITWPDN-WTTLTADGSPAAQFEHSILITRTGAEILTI 304
            ++FVGHGVG  FH  P + H RN +   +  G  FTIEP++ +G  E +  P N W   T D  P+AQ+EH+I IT TG EILT+
Sbjct:  204 DQFVGHGVGIEFHENPYVPHYRNRSMIPLAPGMIFTIEPMINVGKKEGVVDPKNQWEARTCDNQPSAQWEHTIAITETGYEILTL 288          
BLAST of BQ623044 vs. ExPASy Swiss-Prot
Match: AMPM_CHLMU (Methionine aminopeptidase OS=Chlamydia muridarum GN=map PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.704e-15
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 2
Query:   53 NRFVGHGVGKVFHSEPIIYHNRNENPGCMVEGQTFTIEPILTMGSIECITWPDN-WTTLTADGSPAAQFEHSILITRTGAEILTIC*N 313
            ++FVGHGVG  FH  P + H+RN     +  G TFTIEP++ +G  E    P N W   T D  P+AQ+EH++LIT +G EILT+  N
Sbjct:  204 DQFVGHGVGVRFHENPYVAHHRNSCKIPLAPGMTFTIEPMINVGKKEGFIDPTNHWEARTCDHQPSAQWEHTVLITDSGYEILTLLDN 291          
BLAST of BQ623044 vs. ExPASy Swiss-Prot
Match: AMPM1_SYNY3 (Putative methionine aminopeptidase A OS=Synechocystis sp. (strain PCC 6803) GN=slr0918 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.226e-15
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 2
Query:   59 FVGHGVGKVFHSEPIIYHNRNENPGCMVE-GQTFTIEPILTMGSIECITWPDNWTTLTADGSPAAQFEHSILITRTGAEILTI 304
            FVGHG+ K+FH+ P I H      G  +  G  FTIEP++  G+ E +   D WT +T DG  +AQFEH+I +T  G EILT+
Sbjct:  169 FVGHGISKIFHTAPQIPHYGKAGKGKRLRPGMVFTIEPMINEGTWEAVLLDDGWTAITKDGKLSAQFEHTIAVTEDGVEILTL 251          
BLAST of BQ623044 vs. ExPASy Swiss-Prot
Match: AMPM_SALTY (Methionine aminopeptidase OS=Salmonella typhimurium GN=map PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.796e-15
Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 2
Query:   59 FVGHGVGKVFHSEPIIYHNRNENPGCMVE-GQTFTIEPILTMGSIECITWPDNWTTLTADGSPAAQFEHSILITRTGAEILTI 304
            + GHG+G+ FH EP + H   ++ G +++ G TFTIEP+L  G     T  D WT  T D S +AQ+EH+I++T  G EILT+
Sbjct:  168 YCGHGIGRGFHEEPQVLHYDADDGGVVLQPGMTFTIEPMLNAGDYRIRTMKDGWTVKTKDRSLSAQYEHTIVVTENGCEILTL 250          
BLAST of BQ623044 vs. ExPASy Swiss-Prot
Match: AMPM_SALTI (Methionine aminopeptidase OS=Salmonella typhi GN=map PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.796e-15
Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 2
Query:   59 FVGHGVGKVFHSEPIIYHNRNENPGCMVE-GQTFTIEPILTMGSIECITWPDNWTTLTADGSPAAQFEHSILITRTGAEILTI 304
            + GHG+G+ FH EP + H   ++ G +++ G TFTIEP+L  G     T  D WT  T D S +AQ+EH+I++T  G EILT+
Sbjct:  168 YCGHGIGRGFHEEPQVLHYDADDGGVVLQPGMTFTIEPMLNAGDYRIRTMKDGWTVKTKDRSLSAQYEHTIVVTENGCEILTL 250          
BLAST of BQ623044 vs. ExPASy Swiss-Prot
Match: AMPM_MYCTU (Methionine aminopeptidase OS=Mycobacterium tuberculosis GN=map PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 2
Query:   59 FVGHGVGKVFHSEPIIYH-NRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGSPAAQFEHSILITRTGAEILT 301
            F GHG+G  FH+  ++ H ++      M  G TFTIEP++ +G+++   W D WT +T D    AQFEH++L+T TG EILT
Sbjct:  202 FTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILT 283          
BLAST of BQ623044 vs. ExPASy Swiss-Prot
Match: AMPM_MYCBO (Methionine aminopeptidase OS=Mycobacterium bovis GN=map PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 2
Query:   59 FVGHGVGKVFHSEPIIYH-NRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGSPAAQFEHSILITRTGAEILT 301
            F GHG+G  FH+  ++ H ++      M  G TFTIEP++ +G+++   W D WT +T D    AQFEH++L+T TG EILT
Sbjct:  202 FTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILT 283          
BLAST of BQ623044 vs. ExPASy Swiss-Prot
Match: AMPM_CHLTR (Methionine aminopeptidase OS=Chlamydia trachomatis GN=map PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15
Identity = 39/85 (45.88%), Postives = 53/85 (62.35%), Query Frame = 2
Query:   53 NRFVGHGVGKVFHSEPIIYHNRNENPGCMVEGQTFTIEPILTMGSIECITWPDN-WTTLTADGSPAAQFEHSILITRTGAEILTI 304
            ++FVGHGVG  FH  P + H+RN     +  G  FTIEP++ +G  E    P N W   T D  P+AQ+EH+ILIT +G E+LT+
Sbjct:  204 DQFVGHGVGVKFHENPFVAHHRNSCKIPLAPGMIFTIEPMINVGKKEGFIDPINHWEARTCDHQPSAQWEHAILITDSGCEVLTL 288          
BLAST of BQ623044 vs. ExPASy Swiss-Prot
Match: AMPM_SHIFL (Methionine aminopeptidase OS=Shigella flexneri GN=map PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.884e-14
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = 2
Query:   59 FVGHGVGKVFHSEP-IIYHNRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGSPAAQFEHSILITRTGAEILTI 304
            + GHG+G+ FH EP +++++  E    +  G TFTIEP++  G  E  T  D WT  T D S +AQ+EH+I++T  G EILT+
Sbjct:  168 YCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILTL 250          
BLAST of BQ623044 vs. ExPASy Swiss-Prot
Match: AMPM_ECOLI (Methionine aminopeptidase OS=Escherichia coli (strain K12) GN=map PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.884e-14
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = 2
Query:   59 FVGHGVGKVFHSEP-IIYHNRNENPGCMVEGQTFTIEPILTMGSIECITWPDNWTTLTADGSPAAQFEHSILITRTGAEILTI 304
            + GHG+G+ FH EP +++++  E    +  G TFTIEP++  G  E  T  D WT  T D S +AQ+EH+I++T  G EILT+
Sbjct:  168 YCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILTL 250          
The following BLAST results are available for this feature:
BLAST of BQ623044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
AMPM_CHLPN1.704e-1547.06Methionine aminopeptidase OS=Chlamydia pneumoniae ... [more]
AMPM_CHLMU1.704e-1546.59Methionine aminopeptidase OS=Chlamydia muridarum G... [more]
AMPM1_SYNY32.226e-1545.78Putative methionine aminopeptidase A OS=Synechocys... [more]
AMPM_SALTY3.796e-1544.58Methionine aminopeptidase OS=Salmonella typhimuriu... [more]
AMPM_SALTI3.796e-1544.58Methionine aminopeptidase OS=Salmonella typhi GN=m... [more]
AMPM_MYCTU6.475e-1543.90Methionine aminopeptidase OS=Mycobacterium tubercu... [more]
AMPM_MYCBO6.475e-1543.90Methionine aminopeptidase OS=Mycobacterium bovis G... [more]
AMPM_CHLTR6.475e-1545.88Methionine aminopeptidase OS=Chlamydia trachomatis... [more]
AMPM_SHIFL1.884e-1443.37Methionine aminopeptidase OS=Shigella flexneri GN=... [more]
AMPM_ECOLI1.884e-1443.37Methionine aminopeptidase OS=Escherichia coli (str... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00135 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00135 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623044 ID=BQ623044; Name=BQ623044; organism=Citrus sinensis; type=EST; length=372bp
GAGAGAGAGAGAACTAGTGAGCACGCTGAGAAATATGGTTTCGGTGTAGT
GGAACCGTTTTGTTGGGCATGGCGTAGGGAAAGTCTTTCATTCCGAGCCA
ATCATATATCATAACCGTAATGAAAATCCTGGCTGTATGGTTGAAGGTCA
AACATTTACAATTGAACCAATTCTTACAATGGGAAGCATTGAGTGTATAA
CTTGGCCTGACAACTGGACGACTTTGACTGCTGATGGCAGCCCTGCTGCA
CAGTTTGAGCATTCTATTTTAATTACTAGAACTGGCGCAGAAATTTTAAC
AATATGTTGAAACAATCATTTGATTACTAATAATTTTTGGCCACATTGTA
CAATAATATAAGTACATGGTGA
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