BQ623047

Overview
NameBQ623047
Unique NameBQ623047
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1B_BOVIN (GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.909e-15
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 2 
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            ID P A SE+ LR   GL   TTGKG V+L + N RPLEVFMCS++++ GYGEGF+W++QYI
Sbjct:  136 IDRPEAISEERLREMFGLYGQTTGKGNVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197
[Close]
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1B_HUMAN (GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.494e-15
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 2 
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            ID P A SE+ LR   GL   TTGKG ++L + N RPLEVFMCS++++ GYGEGF+W++QYI
Sbjct:  136 IDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197
[Close]
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1_NEOFI (Small COPII coat GTPase sar1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sar1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.475e-15
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 2 
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            ID P A SEDELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYGEG +WLSQY+
Sbjct:  131 IDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189
[Close]
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1_EMENI (Small COPII coat GTPase sar1 OS=Emericella nidulans GN=sar1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.475e-15
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 2 
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            ID P A SEDELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYGEG +WLSQY+
Sbjct:  131 IDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189
[Close]
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1_ASPTN (Small COPII coat GTPase sar1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sar1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.475e-15
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 2 
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            ID P A SEDELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYGEG +WLSQY+
Sbjct:  131 IDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189
[Close]
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1_ASPOR (Small COPII coat GTPase sar1 OS=Aspergillus oryzae GN=sar1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.475e-15
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 2 
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            ID P A SEDELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYGEG +WLSQY+
Sbjct:  131 IDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189
[Close]
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1_ASPNC (Small COPII coat GTPase SAR1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sar1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.475e-15
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 2 
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            ID P A SEDELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYGEG +WLSQY+
Sbjct:  131 IDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189
[Close]
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1_ASPFU (Small COPII coat GTPase sar1 OS=Aspergillus fumigatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.475e-15
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 2 
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            ID P A SEDELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYGEG +WLSQY+
Sbjct:  131 IDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189
[Close]
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1_ASPCL (Small COPII coat GTPase sar1 OS=Aspergillus clavatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.475e-15
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 2 
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            ID P A SEDELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYGEG +WLSQY+
Sbjct:  131 IDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189
[Close]
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1_USTMA (Small COPII coat GTPase SAR1 OS=Ustilago maydis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.238e-14
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 2 
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            ID P A SE+ELR  +GL   TTGKGKV L D  +RP+E+FMCS+V + GYGEGF+W+SQYI
Sbjct:  131 IDAPGAVSEEELRQAIGLYQ-TTGKGKVPLKD--IRPIEIFMCSVVMRQGYGEGFRWISQYI 189
The following BLAST results are available for this feature:
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
SAR1B_BOVIN1.909e-1559.68GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B P... [more]
SAR1B_HUMAN2.494e-1558.06GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B... [more]
SAR1_NEOFI9.475e-1564.52Small COPII coat GTPase sar1 OS=Neosartorya fische... [more]
SAR1_EMENI9.475e-1564.52Small COPII coat GTPase sar1 OS=Emericella nidulan... [more]
SAR1_ASPTN9.475e-1564.52Small COPII coat GTPase sar1 OS=Aspergillus terreu... [more]
SAR1_ASPOR9.475e-1564.52Small COPII coat GTPase sar1 OS=Aspergillus oryzae... [more]
SAR1_ASPNC9.475e-1564.52Small COPII coat GTPase SAR1 OS=Aspergillus niger ... [more]
SAR1_ASPFU9.475e-1564.52Small COPII coat GTPase sar1 OS=Aspergillus fumiga... [more]
SAR1_ASPCL9.475e-1564.52Small COPII coat GTPase sar1 OS=Aspergillus clavat... [more]
SAR1_USTMA1.238e-1462.90Small COPII coat GTPase SAR1 OS=Ustilago maydis GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00138 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00138 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623047 ID=BQ623047; Name=BQ623047; organism=Citrus sinensis; type=EST; length=532bp
AATTGATATCCCATATGCTGCGTCAGAAGATGAGTTGCGATATCACCTTG
GACTGACCAACTTCACCACTGGCAAGGGTAAGGTGAATCTGGTTGATTCA
AACGTTCGTCCCCTTGAGGTATTCATGTGCAGCATTGTCCGCAAAATGGG
TTACGGAGAGGGATTTAAGTGGCTGTCTCAGTACATCAAGTAGAGCAAGA
AGTGGAATTTGTTCGGTTCTTTCTTTATATGTTGTTTACACAATGAATTG
AGGTTGATGCGTTTCCTTTACGAACTGGAGATTCTTGTATTCTCCCATTT
CGCCTATGAAATGACAAACATGCAACGTCCATGCTATTTCGAGACTTTAA
ATTAATGGTTAGACGTTAAAATGGTTGGTGATTTGTGCTTTATTGATAAT
GAGGGCAACATCTAAAACTACTTAAATTCGTGTTTTTTTAATGATCTTTT
AGCAATTACTTCGCTGTAGATTCCCAGAGTTTTTGTTAATGAGAACCCGA
ATATTAGGCCCACCATTTGGTGATTTGCTATG
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