BQ623047

Overview
NameBQ623047
Unique NameBQ623047
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1A_PONAB (GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.238e-14
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 2 
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            ID   A SE++LR   GL   TTGKG V L + N RP+EVFMCS++++ GYGEGF+WLSQYI
Sbjct:  136 IDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197
[Close]
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1A_PIG (GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.238e-14
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 2 
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            ID   A SE++LR   GL   TTGKG V L + N RP+EVFMCS++++ GYGEGF+WLSQYI
Sbjct:  136 IDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197
[Close]
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1A_HUMAN (GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.238e-14
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 2 
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            ID   A SE++LR   GL   TTGKG V L + N RP+EVFMCS++++ GYGEGF+WLSQYI
Sbjct:  136 IDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197
[Close]
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1A_BOVIN (GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.238e-14
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 2 
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            ID   A SE++LR   GL   TTGKG V L + N RP+EVFMCS++++ GYGEGF+WLSQYI
Sbjct:  136 IDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197
[Close]
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1A_MOUSE (GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.111e-14
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 2 
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            ID   A SE++LR   GL   TTGKG V L + N RP+EVFMCS++++ GYGEGF+WLSQYI
Sbjct:  136 IDRTDAISEEKLREIKGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197
[Close]
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1_MAGGR (Small COPII coat GTPase SAR1 OS=Magnaporthe grisea GN=SAR1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.757e-14
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 2 
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            ID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYGEG +WLSQY+
Sbjct:  131 IDHPEAISEEELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189
[Close]
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1_CRYNE (Small COPII coat GTPase SAR1 OS=Cryptococcus neoformans GN=SAR1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.703e-14
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 2 
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            ID   A SE++LR+ LGL   TTGKGK+ L D  +RP+EVFMCS+V + GYGEGF+WLSQYI
Sbjct:  131 IDAYGAVSEEQLRHELGLYQ-TTGKGKIPLRD--IRPIEVFMCSVVMRQGYGEGFRWLSQYI 189
[Close]
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1_ASPNG (Small COPII coat GTPase SAR1 OS=Aspergillus niger GN=sar1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.703e-14
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 2 
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            ID P A SED++R+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYGEG +WLSQY+
Sbjct:  131 IDHPDAVSEDDVRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189
[Close]
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1_YARLI (Small COPII coat GTPase SAR1 OS=Yarrowia lipolytica GN=SAR1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.021e-14
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 2 
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            ID+P A SE EL+  LGL   TTGKGKV L + N+RP+E+FMCSIV + GYG+G +WLSQY+
Sbjct:  131 IDMPQAVSELELKDALGLYQ-TTGKGKVPL-EGNIRPIEIFMCSIVMRQGYGDGIRWLSQYV 190
[Close]
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1_PHANO (Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodorum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 8.021e-14
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 2 
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            ID P A SED+LR  LGL   TTGKGKV L    +RP+EVFMCS+V + GYGEG +WLSQY+
Sbjct:  127 IDHPEAVSEDQLRATLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 185
The following BLAST results are available for this feature:
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
SAR1A_PONAB1.238e-1459.68GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A... [more]
SAR1A_PIG1.238e-1459.68GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A P... [more]
SAR1A_HUMAN1.238e-1459.68GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A... [more]
SAR1A_BOVIN1.238e-1459.68GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A P... [more]
SAR1A_MOUSE2.111e-1459.68GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a... [more]
SAR1_MAGGR2.757e-1462.90Small COPII coat GTPase SAR1 OS=Magnaporthe grisea... [more]
SAR1_CRYNE4.703e-1462.90Small COPII coat GTPase SAR1 OS=Cryptococcus neofo... [more]
SAR1_ASPNG4.703e-1461.29Small COPII coat GTPase SAR1 OS=Aspergillus niger ... [more]
SAR1_YARLI8.021e-1461.29Small COPII coat GTPase SAR1 OS=Yarrowia lipolytic... [more]
SAR1_PHANO8.021e-1462.90Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00138 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00138 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623047 ID=BQ623047; Name=BQ623047; organism=Citrus sinensis; type=EST; length=532bp
AATTGATATCCCATATGCTGCGTCAGAAGATGAGTTGCGATATCACCTTG
GACTGACCAACTTCACCACTGGCAAGGGTAAGGTGAATCTGGTTGATTCA
AACGTTCGTCCCCTTGAGGTATTCATGTGCAGCATTGTCCGCAAAATGGG
TTACGGAGAGGGATTTAAGTGGCTGTCTCAGTACATCAAGTAGAGCAAGA
AGTGGAATTTGTTCGGTTCTTTCTTTATATGTTGTTTACACAATGAATTG
AGGTTGATGCGTTTCCTTTACGAACTGGAGATTCTTGTATTCTCCCATTT
CGCCTATGAAATGACAAACATGCAACGTCCATGCTATTTCGAGACTTTAA
ATTAATGGTTAGACGTTAAAATGGTTGGTGATTTGTGCTTTATTGATAAT
GAGGGCAACATCTAAAACTACTTAAATTCGTGTTTTTTTAATGATCTTTT
AGCAATTACTTCGCTGTAGATTCCCAGAGTTTTTGTTAATGAGAACCCGA
ATATTAGGCCCACCATTTGGTGATTTGCTATG
back to top