BQ623047

Overview
NameBQ623047
Unique NameBQ623047
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1_NEUCR (Small COPII coat GTPase sar-1 OS=Neurospora crassa GN=sar-1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.787e-13
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 2
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            ID P A SEDELR  LGL   TTGKG+V L    +RP+EVFMCS+V + GYGE  +WLSQY+
Sbjct:  131 IDHPEAVSEDELRQRLGLWQ-TTGKGRVPL--EGIRPIEVFMCSVVMRQGYGEAIRWLSQYV 189          
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1_TRIRE (Small COPII coat GTPase sar1 OS=Trichoderma reesei GN=sar1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.334e-13
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 2
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            ID P A SEDELR+ LGL   TTGKG+V L    +RP+E+FMCS+V + GYG+G +WLS Y+
Sbjct:  131 IDHPDAVSEDELRHQLGLYQ-TTGKGRVQL--EGIRPIELFMCSVVMRQGYGDGIRWLSNYV 189          
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1_SCHPO (Small COPII coat GTPase sar1 OS=Schizosaccharomyces pombe GN=sar1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.791e-13
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 2
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            ID P A SEDEL+  LGL   TTGKG V+     +RP+EVFMCS+V + GYGEGFKWL+QY+
Sbjct:  131 IDAPGAISEDELKAALGLYQ-TTGKG-VSKPVPGIRPIEVFMCSVVLRQGYGEGFKWLAQYV 190          
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1_CHAGB (Small COPII coat GTPase SAR1 OS=Chaetomium globosum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 8.869e-13
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 2
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY 184
            ID P A SEDELR+ LG+   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLS +
Sbjct:  131 IDHPDAVSEDELRHQLGMYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGDGIRWLSHF 188          
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1_CAEEL (GTP-binding protein SAR1 OS=Caenorhabditis elegans GN=ZK180.4 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.158e-12
Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = 2
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            ID P A SED+L++ L + +  TGKG V+  +   RP+EVFMCS++++ GYGEG +WL QY+
Sbjct:  132 IDKPGALSEDQLKWQLNIQHMCTGKGDVSRNEMASRPMEVFMCSVLQRQGYGEGIRWLGQYL 193          
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1_PICPG (Small COPII coat GTPase SAR1 OS=Pichia pastoris (strain GS115) GN=SAR1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.370e-12
Identity = 39/62 (62.90%), Postives = 44/62 (70.97%), Query Frame = 2
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            ID   A SE+ELR+ LGL   TTGK KV LV+   RPLEVF CSI  + GYGEG +WLSQYI
Sbjct:  131 IDKSTAVSENELRHALGLMT-TTGKDKVQLVEGQ-RPLEVFTCSIYLRQGYGEGIRWLSQYI 190          
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1_PICST (Small COPII coat GTPase SAR1 OS=Pichia stipitis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.866e-11
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 2
Query:    2 IDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            ID+P A  E EL+  LGL N TTGK    L + + RP+EV+M S+V + GYGEGFKWLSQYI
Sbjct:  131 IDVPTAVGEMELKSALGLYN-TTGKDTGKLPEGS-RPIEVYMVSVVMRSGYGEGFKWLSQYI 190          
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Match: SAR1A_DICDI (GTP-binding protein Sar1A OS=Dictyostelium discoideum GN=sarA PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.866e-11
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 2
Query:   23 SEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 187
            SE++ R  LGLT  TTGKGK  L  + VRP+EVFMCS+V++ GY EGF+WL+ Y+
Sbjct:  137 SEEKFRASLGLTQ-TTGKGKTTL--NGVRPIEVFMCSVVKRYGYAEGFRWLANYL 188          
The following BLAST results are available for this feature:
BLAST of BQ623047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
SAR1_NEUCR1.787e-1361.29Small COPII coat GTPase sar-1 OS=Neurospora crassa... [more]
SAR1_TRIRE2.334e-1358.06Small COPII coat GTPase sar1 OS=Trichoderma reesei... [more]
SAR1_SCHPO6.791e-1361.29Small COPII coat GTPase sar1 OS=Schizosaccharomyce... [more]
SAR1_CHAGB8.869e-1359.02Small COPII coat GTPase SAR1 OS=Chaetomium globosu... [more]
SAR1_CAEEL1.158e-1250.00GTP-binding protein SAR1 OS=Caenorhabditis elegans... [more]
SAR1_PICPG3.370e-1262.90Small COPII coat GTPase SAR1 OS=Pichia pastoris (s... [more]
SAR1_PICST4.866e-1158.06Small COPII coat GTPase SAR1 OS=Pichia stipitis GN... [more]
SAR1A_DICDI4.866e-1158.18GTP-binding protein Sar1A OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00138 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00138 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623047 ID=BQ623047; Name=BQ623047; organism=Citrus sinensis; type=EST; length=532bp
AATTGATATCCCATATGCTGCGTCAGAAGATGAGTTGCGATATCACCTTG
GACTGACCAACTTCACCACTGGCAAGGGTAAGGTGAATCTGGTTGATTCA
AACGTTCGTCCCCTTGAGGTATTCATGTGCAGCATTGTCCGCAAAATGGG
TTACGGAGAGGGATTTAAGTGGCTGTCTCAGTACATCAAGTAGAGCAAGA
AGTGGAATTTGTTCGGTTCTTTCTTTATATGTTGTTTACACAATGAATTG
AGGTTGATGCGTTTCCTTTACGAACTGGAGATTCTTGTATTCTCCCATTT
CGCCTATGAAATGACAAACATGCAACGTCCATGCTATTTCGAGACTTTAA
ATTAATGGTTAGACGTTAAAATGGTTGGTGATTTGTGCTTTATTGATAAT
GAGGGCAACATCTAAAACTACTTAAATTCGTGTTTTTTTAATGATCTTTT
AGCAATTACTTCGCTGTAGATTCCCAGAGTTTTTGTTAATGAGAACCCGA
ATATTAGGCCCACCATTTGGTGATTTGCTATG
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