BQ623056

Overview
NameBQ623056
Unique NameBQ623056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623056_ssr384 microsatellite BQ623056_ssr384:384..395. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 2.270e-49
Identity = 99/193 (51.30%), Postives = 127/193 (65.80%), Query Frame = 2
Query:   44 MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGNXXXXXXXXXXXXVGPTSWLGGPLMG 622
            M G+A G+  +     +LRA +AEF S ++FVFAG GS +AY+KLT + A    GLV+ ++ H FALFVAV++GANISGGHVNPAVTFG  VGG IT +  + YWIAQLLGS  AC LLK+ TGGL     ++++G+G+   VV EI++TF LVYT YATA DPK+G+            VG      GP  G
Sbjct:    1 MAGVAFGSFDDSFSLASLRAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLKYVTGGLAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGSLGTIAPLAIGLIVGANILAAGPFSG 193          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.965e-49
Identity = 95/188 (50.53%), Postives = 128/188 (68.09%), Query Frame = 2
Query:   59 IGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGNXXXXXXXXXXXXVGPTSWLGGPLMG 622
            +G   +   PD +RAA++EF +  IFVFA +GS ++  KL  +  +TP GLV+ S+AHA AL VAV+V  NISGGHVNPA+TFGA +GG ++ +R++ YW+AQLLG+VVA LLL+ +TGG+    FAL+SGVG W+AV+ E  MTFGL+Y  YAT +DPKRG+            +G     GGP  G
Sbjct:   14 VGRSEDATHPDTIRAAISEFLATAIFVFAAEGSILSLGKLYQD-MSTPGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLRLTTGGMRPPGFALASGVGDWHAVLLEATMTFGLMYAYYATVIDPKRGHVGTIAPLAVGFLLGANMLAGGPFDG 200          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.057e-49
Identity = 96/188 (51.06%), Postives = 128/188 (68.09%), Query Frame = 2
Query:   59 IGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGNXXXXXXXXXXXXVGPTSWLGGPLMG 622
            +G   +   PD +RAA++EF +  IFVFA +GS ++  K+  +  +T  GLV+ ++AHA AL VAV+V  NISGGHVNPAVTFGA VGG ++ VR++LYW+AQLLG+V A LLL+ +TGG+    FAL+SGVG W+AV+ E VMTFGL+Y  YAT +DPKRG+            +G     GGP  G
Sbjct:   13 VGRSEDATHPDTIRAAISEFIATAIFVFAAEGSVLSLGKMYHD-MSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLRLATGGMRPPGFALASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKRGHVGTIAPLAVGFLLGANVLAGGPFDG 199          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 1.922e-48
Identity = 98/190 (51.58%), Postives = 125/190 (65.79%), Query Frame = 2
Query:   53 IAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGNXXXXXXXXXXXXVGPTSWLGGPLMG 622
            IA G+  +     +L+A VAEF + ++FVFAG GS +AY+KLT + A  PAGLV+ ++AHAFALFV VS+ ANISGGH+NPAVT G  VGG+IT +    YWIAQLLGS VACLLLK+ T GL      +++G+  +  VV EI++TF LVYT YATA DPK+G+            VG      GP  G
Sbjct:    4 IAFGSIGDSFSVGSLKAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHGVAAGLNGFQGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSG 193          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.510e-48
Identity = 98/193 (50.78%), Postives = 126/193 (65.28%), Query Frame = 2
Query:   44 MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGNXXXXXXXXXXXXVGPTSWLGGPLMG 622
            M  I +G+  +     +L+A ++EF + ++FVFAG GS +A++KLT +GA  PAGLV+ +IAHAFALFV VS+ ANISGGH+NPAVT G  +GG+IT +    YWIAQ LGS+VACLLL F T G       +S+G+GA   VV EIV+TF LVYT YATA DPK+G+            VG      GP  G
Sbjct:    1 MVKIEVGSVGDSFSVSSLKAYLSEFIATLLFVFAGVGSAVAFAKLTSDGALDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSIVACLLLVFVTNGKSVPTHGVSAGLGAVEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSG 193          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.278e-48
Identity = 99/193 (51.30%), Postives = 125/193 (64.77%), Query Frame = 2
Query:   44 MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGNXXXXXXXXXXXXVGPTSWLGGPLMG 622
            M  IA G+  +     +L+A VAEF + ++FVFAG GS +AY+KLT + A  PAGLV+ ++AHAFALFV VS+ ANISGGH+NPAVT G  VGG+IT +    YWIAQLLGS VACLLLK+ T GL      +++G+     VV EI++TF LVYT YATA DPK+G+            VG      GP  G
Sbjct:    1 MVRIAFGSIGDSFSVGSLKAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHGVAAGLNGLQGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSG 193          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.281e-48
Identity = 98/193 (50.78%), Postives = 126/193 (65.28%), Query Frame = 2
Query:   44 MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGNXXXXXXXXXXXXVGPTSWLGGPLMG 622
            M  IA G+  +     +++A VAEF + ++FVFAG GS +AY+KLT + A  PAGLV+ ++AHAFALFV VS+ AN+SGGH+NPAVT G  VGG+IT +  + YWIAQ LGS VACLLLKF T GL      +++G+ A   VV EI++TF LVYT YATA DPK+G+            VG      GP  G
Sbjct:    1 MVKIAFGSIGDSFSVASIKAYVAEFIATLLFVFAGVGSAIAYNKLTSDAALDPAGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLKFVTNGLSVPTHGVAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGSLGVIAPIAIGFIVGANILAAGPFSG 193          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.125e-47
Identity = 99/193 (51.30%), Postives = 125/193 (64.77%), Query Frame = 2
Query:   44 MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGNXXXXXXXXXXXXVGPTSWLGGPLMG 622
            M  +A G+  +     +++A VAEF + ++FVFAG GS +AY +LT+ GA  PAGLV+ +IAHA ALFV VSV ANISGGH+NPAVTFG  VGGHIT +  + YW+AQLLG+ VACLLL F T G      A+ +G+     VVFE+V+TF LVYT YATA DPK+G+            VG      GP  G
Sbjct:    1 MVKLAFGSVGDSFSATSIKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGVFYWVAQLLGATVACLLLGFVTHGKAIPTHAV-AGISELEGVVFEVVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSG 192          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 3.624e-47
Identity = 97/193 (50.26%), Postives = 125/193 (64.77%), Query Frame = 2
Query:   44 MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGNXXXXXXXXXXXXVGPTSWLGGPLMG 622
            M  I IG+  +     +L+A ++EF + ++FVFAG GS +A++KLT + A  PAGLV+ ++AHAFALFV VS+ ANISGGH+NPAVT G  VGG+IT +    YWIAQ LGS+VACLLL F T G       +++G+GA   VV EIV+TF LVYT YATA DPK+G+            VG      GP  G
Sbjct:    1 MVKIEIGSVGDSFSVASLKAYLSEFIATLLFVFAGVGSALAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITVITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSG 193          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.182e-47
Identity = 97/193 (50.26%), Postives = 123/193 (63.73%), Query Frame = 2
Query:   44 MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGNXXXXXXXXXXXXVGPTSWLGGPLMG 622
            M  +A G+  +     +++A VAEF + ++FVFAG GS +A+ +LT+ GA  PAGLV+ ++AHA ALFV VSV AN SGGH+NPAVTFG  VGGHIT +  + YW+AQLLG+ VACLLL+F T G       +S G      VVFEIV+TF LVYT YATA DPK+G+            VG      GP  G
Sbjct:    1 MVKLAFGSVGDSFSVTSIKAYVAEFIATLLFVFAGVGSAIAFGQLTNGGALDPAGLVAIAVAHALALFVGVSVAANTSGGHLNPAVTFGLAVGGHITVLTGLFYWVAQLLGASVACLLLRFVTHGKAIPTHGVSGGTTELEGVVFEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSG 193          
The following BLAST results are available for this feature:
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
TIP21_ARATH2.270e-4951.30Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
TIP31_ORYSJ2.965e-4950.53Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP31_MAIZE5.057e-4951.06Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP2_TOBAC1.922e-4851.58Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP23_ARATH2.510e-4850.78Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
TIP1_TOBAC3.278e-4851.30Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP_ANTMA4.281e-4850.78Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP21_MAIZE2.125e-4751.30Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1[more]
TIP22_ARATH3.624e-4750.26Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
TIP22_MAIZE6.182e-4750.26Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00147 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00147 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623056 ID=BQ623056; Name=BQ623056; organism=Citrus sinensis; type=EST; length=642bp
AGAGCTCGAAGCTAAAACTAAAACTTGCCAAGAAAATTAAAAAATGCCCG
GAATTGCTATCGGAAACCCGGCTGAGATCGGCCAGCCCGATGCCCTTAGG
GCGGCTGTCGCTGAGTTTTTCTCCATGGTCATTTTTGTTTTTGCCGGCCA
AGGGTCTGGCATGGCTTACAGCAAGCTCACGGACAATGGAGCAACAACAC
CAGCAGGTCTAGTGTCAGCATCAATAGCTCATGCATTTGCCCTCTTCGTG
GCAGTTTCTGTTGGCGCCAACATCTCCGGTGGACACGTGAACCCCGCTGT
TACTTTCGGTGCCTTTGTTGGCGGCCACATTACATTTGTCAGGAGTATTT
TGTACTGGATTGCCCAGTTACTCGGATCTGTTGTTGCTTGCTTGCTTCTC
AAGTTCTCCACTGGTGGATTGGAAACATCTGCTTTTGCCCTGTCATCTGG
AGTTGGTGCATGGAATGCAGTTGTGTTTGAGATTGTGATGACCTTTGGAC
TGGTCTACACGGGGTATGCCACAGCTGTTGACCCAAAGAGGGGAAACATT
GGCATCATTGCACCAATTGCAATTGGGTTATTGGTGGGGCCCACATCTTG
GCTGGGGGGGCCTTTGATGGGGCATCGATGACCCCTGAGTTT
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