BQ623056

Overview
NameBQ623056
Unique NameBQ623056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623056_ssr384 microsatellite BQ623056_ssr384:384..395. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.074e-47
Identity = 92/189 (48.68%), Postives = 125/189 (66.14%), Query Frame = 2
Query:   56 AIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGNXXXXXXXXXXXXVGPTSWLGGPLMG 622
            + G   E   PD++RA++AEF S  IFVFAG+GSG+A  K+  + A +   L++ ++AHAFALF AVS   ++SGGHVNPAV+FGA +GG I+ +R++ YWIAQLLGS+VA L+L+  T  +  S F +S GVG  +  + E+VMTFGL+YT Y TA+DPKRG             VG    +GGP  G
Sbjct:    7 SFGRTDEATHPDSMRASLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTNNMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGAVSYIAPLAIGLIVGANILVGGPFDG 195          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.054e-46
Identity = 101/193 (52.33%), Postives = 125/193 (64.77%), Query Frame = 2
Query:   44 MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGNXXXXXXXXXXXXVGPTSWLGGPLMG 622
            M  +A G+  +     +L+A VAEF + ++FVFAG GS +AYS+LT  GA  PAGLV+ +IAHAFALFV VS+ ANISGGH+NPAVTFG  VGGHIT +  ILYW+AQLLG+ VAC LL++ T G       + SG+     VV EIV+TF LVYT YATA DPK+G+            VG      GP  G
Sbjct:    1 MVKLAFGSFRDSLSAASLKAYVAEFIATLLFVFAGVGSAIAYSQLTKGGALDPAGLVAIAIAHAFALFVGVSMAANISGGHLNPAVTFGLAVGGHITILTGILYWVAQLLGASVACFLLQYVTHGQAIPTHGV-SGISEIEGVVMEIVITFALVYTVYATAADPKKGSLGTIAPMAIGFIVGANILAAGPFSG 192          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.377e-46
Identity = 99/193 (51.30%), Postives = 124/193 (64.25%), Query Frame = 2
Query:   44 MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGNXXXXXXXXXXXXVGPTSWLGGPLMG 622
            M  +A G+  +     +++A VAEF + ++FVFAG GS +AY +LT+ GA  PAGLV+ +IAHA ALFV VSV ANISGGH+NPAVTFG  VGGHIT +  + YWIAQLLG+ +ACLLLKF T G       + +G+     VV EIV+TF LVYT YATA DPK+G+            VG      GP  G
Sbjct:    1 MVKLAFGSLGDSFSATSVKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGLFYWIAQLLGASIACLLLKFVTHGKAIPTHGV-AGISELEGVVMEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSG 192          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.799e-46
Identity = 95/190 (50.00%), Postives = 124/190 (65.26%), Query Frame = 2
Query:   59 IGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAT--TPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGNXXXXXXXXXXXXVGPTSWLGGPLMG 622
            +G   +   PD +RAA++EF +  IFVFA +GS ++  K+  + +T  T  GLV+ ++AHA  L VAV+V  N+SGGHVNPAVTFGA VGG ++ VR++LYW AQLLG+V A LLL+ +TGG     FAL+SGVG  +AV+ E VMTFG VY  YAT VDPKRG+            +G     GGP  G
Sbjct:   15 VGRSEDATHPDTIRAAISEFIATAIFVFAAEGSVLSLGKMYHDHSTISTAGGLVAVALAHALGLAVAVAVAVNVSGGHVNPAVTFGALVGGRVSLVRAVLYWAAQLLGAVAATLLLRLATGGARPPGFALASGVGDGHAVLLEAVMTFGFVYAYYATVVDPKRGHLGTIAPLAVGFLLGANVLAGGPFDG 204          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.799e-46
Identity = 92/192 (47.92%), Postives = 123/192 (64.06%), Query Frame = 2
Query:   62 GNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKL-----TDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGNXXXXXXXXXXXXVGPTSWLGGPLMG 622
            G   E   PD++RA +AEF S  +FVFAG+GS +A  KL        G  TP GLV  ++AHA ALF AVS   N+SGGHVNPAVTF A +GG I+ +R+I YW+AQL+G+++ACLLL+ +T GL    F ++SGV   + ++ EI++TF LVY  Y+TA+DPKRG+            VG    +GGP  G
Sbjct:   12 GRADEATHPDSIRATLAEFLSTFVFVFAGEGSILALDKLYWDTAAHTGTNTPGGLVLVALAHALALFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWVAQLIGAILACLLLRLATNGLRPVGFHVASGVSELHGLLMEIILTFALVYVVYSTAIDPKRGSIGIIAPLAIGLIVGANILVGGPFDG 203          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.799e-46
Identity = 98/190 (51.58%), Postives = 125/190 (65.79%), Query Frame = 2
Query:   53 IAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGNXXXXXXXXXXXXVGPTSWLGGPLMG 622
            IA G   +     +L+A VAEF S ++FVFAG GS +AY+KLT      PAGLV+ ++ H F LFVAV++GANISGGHVNPAVTFG  +GG IT +  + YWIAQLLG++V  +L++F T G+ T    L SGVGA+  VV EI++TFGLVYT YATA DPK+G+            VG    + GP  G
Sbjct:    5 IAFGRFDDSFSAASLKAYVAEFISTLVFVFAGVGSAIAYTKLTGGAPLDPAGLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQFCT-GVATPTHGL-SGVGAFEGVVMEIIVTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILVAGPFSG 192          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.319e-40
Identity = 85/193 (44.04%), Postives = 116/193 (60.10%), Query Frame = 2
Query:   44 MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGNXXXXXXXXXXXXVGPTSWLGGPLMG 622
            M  I +G+ +E  +PD ++A + EF +  +FVFAG GS MA   L  N   T  GL + ++AHAF + V +S G +ISGGH+NPAVT G  +GGHI+  R+ LYWI QLL S  AC LL + TGG+ T    L+SGV     +++EI++TF L++T YAT VDPK+G+            VG     GG   G
Sbjct:    1 MKKIELGHHSEAAKPDCIKALIVEFITTFLFVFAGVGSAMATDSLVGN---TLVGLFAVAVAHAFVVAVMISAG-HISGGHLNPAVTLGLLLGGHISVFRAFLYWIDQLLASSAACFLLSYLTGGMGTPVHTLASGVSYTQGIIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLLTGFVVGANILAGGAFSG 189          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 5.782e-39
Identity = 80/154 (51.95%), Postives = 104/154 (67.53%), Query Frame = 2
Query:   86 PDALRAAVAEFFSMVIFVFAGQGSGMAYSKL-TDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRG 544
            P A RAA++EF +  +FVFA +GS     K+  D G  T  GL+  ++AHA AL  AV+V  N SGGHVNPAVTFG  VG  I+F R+ LYW AQLLG+V+A LLL+ ++GG+    F L   +   +A++ E+VMTFGLVYT YATAVD + G
Sbjct:   25 PGATRAALSEFVATAVFVFAAEGSVYGLWKMYRDTG--TLGGLLVVAVAHALALAAAVAVSRNASGGHVNPAVTFGVLVGRRISFARAALYWAAQLLGAVLAVLLLRLASGGMRPMGFTLGHRIHERHALLLEVVMTFGLVYTVYATAVDRRSG 176          

HSP 2 Score: 32.7278 bits (73), Expect = 5.782e-39
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 1
Query:  577 VIGGAHILAGGAFDGASMTP 636
            ++ GA+ILAGG FDGA+M P
Sbjct:  187 LVAGANILAGGPFDGAAMNP 206          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.259e-35
Identity = 90/194 (46.39%), Postives = 108/194 (55.67%), Query Frame = 2
Query:   44 MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLE-TSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGNXXXXXXXXXXXXVGPTSWLGGPLMG 622
            M  +A+G+  E   P  LRA VAE     +FVF+G GS MA +KL   G  T  GL + + AHA  + V VS G ++SGGH+NPAVT G   GGHIT  RS LY  AQLLGS +ACLLL   TGG E     A + GVGA  AV  E V+TF L++  YAT VD +R              VG     GGP  G
Sbjct:    1 MAKLALGHHREATDPGCLRAVVAELLLTFLFVFSGVGSAMAAAKL-GGGGDTIMGLTAVAAAHALVVAVMVSAGLHVSGGHINPAVTLGLAAGGHITLFRSALYAAAQLLGSSLACLLLAALTGGEEAVPVHAPAPGVGAARAVAMEAVLTFSLLFAVYATVVDRRRA-VGALGPLLVGLVVGANILAGGPYSG 192          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.337e-33
Identity = 83/194 (42.78%), Postives = 103/194 (53.09%), Query Frame = 2
Query:   44 MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKF-STGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRGNXXXXXXXXXXXXVGPTSWLGGPLMG 622
            M   A+G+  E      +RA +AE     +FVFAG GS MA  KL   G  T  GL + ++AH   + V VS G ++SGGH+NPAVT G    G IT  RS LY  AQLLGS +ACLLL F +         AL +GVGA   V+ E V+TF L++  YAT VDP+R              VG     GGP  G
Sbjct:    1 MAKFALGHHREASDAGCVRAVLAELILTFLFVFAGVGSAMATGKLAGGGGDTVVGLTAVALAHTLVVAVMVSAGLHVSGGHINPAVTLGLAATGRITLFRSALYVAAQLLGSTLACLLLAFLAVADSGVPVHALGAGVGALRGVLMEAVLTFSLLFAVYATVVDPRRA-VGGMGPLLVGLVVGANVLAGGPFSG 193          
The following BLAST results are available for this feature:
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
TIPA_PHAVU8.074e-4748.68Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP23_MAIZE1.054e-4652.33Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
TIP21_ORYSJ1.377e-4651.30Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
TIP32_MAIZE1.799e-4650.00Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
TIP32_ARATH1.799e-4647.92Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIP22_ORYSJ1.799e-4651.58Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP41_ARATH7.319e-4044.04Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP32_ORYSJ5.782e-3951.95Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
TIP43_ORYSJ9.259e-3546.39Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]
TIP44_MAIZE1.337e-3342.78Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00147 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00147 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623056 ID=BQ623056; Name=BQ623056; organism=Citrus sinensis; type=EST; length=642bp
AGAGCTCGAAGCTAAAACTAAAACTTGCCAAGAAAATTAAAAAATGCCCG
GAATTGCTATCGGAAACCCGGCTGAGATCGGCCAGCCCGATGCCCTTAGG
GCGGCTGTCGCTGAGTTTTTCTCCATGGTCATTTTTGTTTTTGCCGGCCA
AGGGTCTGGCATGGCTTACAGCAAGCTCACGGACAATGGAGCAACAACAC
CAGCAGGTCTAGTGTCAGCATCAATAGCTCATGCATTTGCCCTCTTCGTG
GCAGTTTCTGTTGGCGCCAACATCTCCGGTGGACACGTGAACCCCGCTGT
TACTTTCGGTGCCTTTGTTGGCGGCCACATTACATTTGTCAGGAGTATTT
TGTACTGGATTGCCCAGTTACTCGGATCTGTTGTTGCTTGCTTGCTTCTC
AAGTTCTCCACTGGTGGATTGGAAACATCTGCTTTTGCCCTGTCATCTGG
AGTTGGTGCATGGAATGCAGTTGTGTTTGAGATTGTGATGACCTTTGGAC
TGGTCTACACGGGGTATGCCACAGCTGTTGACCCAAAGAGGGGAAACATT
GGCATCATTGCACCAATTGCAATTGGGTTATTGGTGGGGCCCACATCTTG
GCTGGGGGGGCCTTTGATGGGGCATCGATGACCCCTGAGTTT
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