BQ623056

Overview
NameBQ623056
Unique NameBQ623056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623056_ssr384 microsatellite BQ623056_ssr384:384..395. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.992e-17
Identity = 56/162 (34.57%), Postives = 89/162 (54.94%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTD------NGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA--------LSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            RA +AEF + ++F++    + + Y   +D      + A +  G++  + A    +F+ V   A ISGGH+NPAVTFG F+   ++ +R++LY IAQ LG++    L+K    G ++S +A        LS G      +  EI+ TF LVYT + +A DPKR
Sbjct:   41 RAVIAEFIATLLFLYITVATVIGYKHQSDATVNTTDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYIIAQCLGAICGVGLVK----GFQSSYYARYGGGANELSDGYSKGTGLGAEIIGTFVLVYTVF-SATDPKR 197          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.908e-17
Identity = 61/159 (38.36%), Postives = 85/159 (53.46%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTD----NGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKF--ST-----GGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            RA +AEF + ++F++    + + +   TD     GA    GL+  S A    +F+ V   A ISGGH+NPAVTFG F+   ++ VR++ Y +AQ LG+     L+K   ST     GG    A  LS G      V  EI+ TF LVYT + +A DPKR
Sbjct:   38 RAVIAEFIATLLFLYVTVLTVIGFKSQTDINAGGGACASVGLLGISWAFGGMIFILVYCTAGISGGHINPAVTFGLFLASKVSLVRAVSYMVAQCLGATCGVGLVKVFQSTYYNRYGG---GANMLSDGYNVGVGVGAEIIGTFVLVYTVF-SATDPKR 192          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.908e-17
Identity = 57/158 (36.08%), Postives = 85/158 (53.80%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTP----AGLVSASIAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            RA +AEF + ++F++    + + Y   +D GA       +G+    IA AF   +F+ V   A +SGGH+NPAVTFG F+   ++ VR++LY +AQ LG++    L+K             A  LS G      +  EI+ TF LVYT + +A DPKR
Sbjct:   42 RAVIAEFVATLLFLYITVATVIGYKHQSDPGANAADAACSGVGILGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRAVLYIVAQSLGAICGVGLVKGFQSAFYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVF-SATDPKR 198          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.104e-17
Identity = 50/143 (34.97%), Postives = 80/143 (55.94%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAG----LVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAF---ALSSGVGAWNAVVFEIVMTFGLV 505
            RA +AEF +M++FVF   G+ + ++   +  A    G    +V  S+A   ++        ++SG H+NPAVT G  +   I+ +++++Y IAQ LG+VVA  +L   T GLE ++     LS GV A   +  EI++TF LV
Sbjct:   12 RAVIAEFLAMILFVFISIGAALGFNFPIEEKANQTVGRSQDIVKVSLAFGISIATMAQSVGHVSGAHLNPAVTLGCLLSCQISILKAVMYIIAQCLGAVVATAILSGITSGLENNSLGLNGLSPGVSAGQGLGVEILVTFQLV 154          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.706e-17
Identity = 58/156 (37.18%), Postives = 83/156 (53.21%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDN--GATTPAGLVSASIAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            RA +AEF + ++F++    + + Y   TD   G     G+    IA AF   +FV V   A ISGGH+NPAVT G F+   ++ VR++LY +AQ LG++  C  +K       T     A  L+ G      +  EI+ TF LVYT + +A DPKR
Sbjct:   39 RAVIAEFVATLLFLYVSILTVIGYKAQTDATAGGVDCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTVGLFLARKVSLVRTVLYIVAQCLGAICGCGFVKAFQSSYYTRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKR 193          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.137e-16
Identity = 55/152 (36.18%), Postives = 86/152 (56.58%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGG----LETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            RAA+AEF + ++F++    + + Y K TD  A+   GL+  + +    +FV V   A ISGGH+NPAVTFG F+   ++ +R+++Y IAQ  G++    L+K    G        A +++ G     A   E++ TF LVYT + +A DPKR
Sbjct:   40 RAAIAEFIATLLFLYITVATVIGYKKETDPCASV--GLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCAGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTAFGAELIGTFVLVYTVF-SATDPKR 188          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.940e-16
Identity = 64/186 (34.41%), Postives = 96/186 (51.61%), Query Frame = 2
Query:    8 EAKTKTCQEN*KMPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK------FST--GGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            E KT   ++    P   + +  E+      RA +AEF + ++F++    + + + K T  G     GL+  + A    +FV V   A ISGGH+NPAVTFG F+   ++ VR++ Y IAQ LG++     +K      ++T  GG  T A   S G     A+  EI+ TF LVYT + +A DPKR
Sbjct:    8 EGKTHHGKDYVDPPPAPLLDMGELKSWSFYRALIAEFIATLLFLYVTVATVIGHKKQT--GPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALGYMIAQCLGAICGVGFVKAFMKTPYNTLGGGANTVADGYSKG----TALGAEIIGTFVLVYTVF-SATDPKR 186          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.533e-16
Identity = 59/165 (35.76%), Postives = 87/165 (52.73%), Query Frame = 2
Query:   71 AEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYS--KLTDNGATTPAGLVSASIAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            AE+ +    RA +AEF + ++F++    + + Y     TD G     G+    IA AF   +F+ V   A ISGGH+NPAVTFG F+   ++  R++LY IAQ LG++     +K       T     A +L+ G      +  EI+ TF LVYT + +A DPKR
Sbjct:   30 AELKKWSFYRAVIAEFVATLLFLYITVLTVIGYKIQSDTDAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLPRALLYIIAQCLGAICGVGFVKAFQSSYYTRYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVF-SATDPKR 193          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 2.533e-16
Identity = 55/148 (37.16%), Postives = 84/148 (56.76%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAV---SVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAF---ALSSGVGAWNAVVFEIVMTFGLVYTGYAT 523
            RA VAEF +M++F+F   GS + +     +  TT A   +  ++ AF L +A    SVG +ISG H+NPAVT G  +   I+ +R+I+Y IAQ +G++VA ++L   T  L  ++    AL+ GV +   +  EI+ T  LV    AT
Sbjct:   12 RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVG-HISGAHLNPAVTLGLLLSCQISILRAIMYIIAQCVGAIVATVILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLAT 158          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.308e-16
Identity = 54/148 (36.49%), Postives = 82/148 (55.41%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAV---SVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA---LSSGVGAWNAVVFEIVMTFGLVYTGYAT 523
            RA VAEF +M++FVF   GS + ++    N  T  A   +  ++ AF L +A    SVG +ISG H+NPAVT G  +   I+ +R+++Y IAQ +G++VA  +L   T  L  ++     L+ GV +   +  EI+ T  LV    AT
Sbjct:   12 RAVVAEFLAMILFVFISIGSALGFNYPVRNNQTAGAAQDNVKVSLAFGLSIATLAQSVG-HISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLPDNSLGRNELAPGVNSGQGLGIEIIGTLQLVLCVLAT 158          
The following BLAST results are available for this feature:
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
PIP22_ORYSJ2.992e-1734.57Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP26_ARATH3.908e-1738.36Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP23_ORYSJ3.908e-1736.08Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
AQPA_RANES5.104e-1734.97Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
PIP24_ARATH8.706e-1737.18Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP1_ATRCA1.137e-1636.18Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP27_ARATH1.940e-1634.41Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP21_ARATH2.533e-1635.76Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
AQP1_SHEEP2.533e-1637.16Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3[more]
AQP1_CANFA3.308e-1636.49Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00147 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00147 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623056 ID=BQ623056; Name=BQ623056; organism=Citrus sinensis; type=EST; length=642bp
AGAGCTCGAAGCTAAAACTAAAACTTGCCAAGAAAATTAAAAAATGCCCG
GAATTGCTATCGGAAACCCGGCTGAGATCGGCCAGCCCGATGCCCTTAGG
GCGGCTGTCGCTGAGTTTTTCTCCATGGTCATTTTTGTTTTTGCCGGCCA
AGGGTCTGGCATGGCTTACAGCAAGCTCACGGACAATGGAGCAACAACAC
CAGCAGGTCTAGTGTCAGCATCAATAGCTCATGCATTTGCCCTCTTCGTG
GCAGTTTCTGTTGGCGCCAACATCTCCGGTGGACACGTGAACCCCGCTGT
TACTTTCGGTGCCTTTGTTGGCGGCCACATTACATTTGTCAGGAGTATTT
TGTACTGGATTGCCCAGTTACTCGGATCTGTTGTTGCTTGCTTGCTTCTC
AAGTTCTCCACTGGTGGATTGGAAACATCTGCTTTTGCCCTGTCATCTGG
AGTTGGTGCATGGAATGCAGTTGTGTTTGAGATTGTGATGACCTTTGGAC
TGGTCTACACGGGGTATGCCACAGCTGTTGACCCAAAGAGGGGAAACATT
GGCATCATTGCACCAATTGCAATTGGGTTATTGGTGGGGCCCACATCTTG
GCTGGGGGGGCCTTTGATGGGGCATCGATGACCCCTGAGTTT
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