BQ623056

Overview
NameBQ623056
Unique NameBQ623056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623056_ssr384 microsatellite BQ623056_ssr384:384..395. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.282e-14
Identity = 52/152 (34.21%), Postives = 74/152 (48.68%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALS---SGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRG 544
            RA  AEFF+ + +VF G GS + +       A  P  ++  ++A   AL   V    +ISG HVNPAVTF   VG  ++ +R+  Y  AQLLG+V    +L   T        AL+   +GV    A   EI +T   V   +AT  + + G
Sbjct:    9 RAIFAEFFATLFYVFFGLGSSLRW-------APGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNG 153          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.898e-14
Identity = 58/169 (34.32%), Postives = 85/169 (50.30%), Query Frame = 2
Query:   47 PGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK-FSTG---GLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            P   +  P E+      RA +AEF +  +F++    + M  SK T   AT   G+   + +    +F  V   A ISGGH+NPAVTFG F+   ++  R++ Y I Q LG+V    ++K F  G   G    A  ++ G    + +  EIV TF LVYT + +A D KR
Sbjct:   38 PPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGVSKSTSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAVCGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKR 203          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.010e-14
Identity = 51/152 (33.55%), Postives = 74/152 (48.68%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALS---SGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRG 544
            RA  AEFF+ + +VF G G+ + +       A  P  ++  ++A   AL   V    +ISG HVNPAVTF   VG  ++ +R+  Y  AQLLG+V    +L   T        AL+   +GV    A   EI +T   V   +AT  + + G
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNG 155          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.010e-14
Identity = 55/154 (35.71%), Postives = 76/154 (49.35%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVGAWNAVVFEIVMTFGLVYTGYATAVDPKRG 544
            RA  AEFF+ + +VF G G+ + +         TP  L    +A AF L +A  V A  +ISG HVNPAVTF   VG  ++ +R+  Y  AQLLG+V    +L   T        AL++   GV    A   EI +T   V   +AT  + + G
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW---------TPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATTVEIFLTLQFVLCIFATYDERRNG 155          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: AQP2_SHEEP (Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.010e-14
Identity = 56/155 (36.13%), Postives = 81/155 (52.26%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSA-SIAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGL---ETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRG 544
            RA +AEF + ++FVF G GS + +          P  L S   IA AF L +   V A  ++SG H+NPAVT    VG H++F+R++ Y  AQLLG+V    LL   T      + +  AL++   A  AV  E+ +T  LV   +  + D +RG
Sbjct:   11 RAVLAEFLATLLFVFFGLGSALNW----------PQALPSVLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALLHEITPPAIRGDLAVNALNNNSTAGQAVTVELFLTLQLVLCIF-PSTDKRRG 154          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.177e-13
Identity = 53/152 (34.87%), Postives = 81/152 (53.29%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK-FSTG---GLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            RA +AEF +  +F++    + M  SK +   AT   G+   + +    +F  V   A ISGGH+NPAVTFG F+   ++  R++ Y + Q LG++    ++K F  G   G    A A++ G    + +  EIV TF LVYT + +A D KR
Sbjct:   54 RAGIAEFVATFLFLYISILTVMGVSKSSSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQEGLYMGAGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVF-SATDAKR 202          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.177e-13
Identity = 51/152 (33.55%), Postives = 74/152 (48.68%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALS---SGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRG 544
            RA  AEFF+ + +VF G G+ + +       A  P  ++  ++A   AL   V    +ISG HVNPAVTF   VG  ++ +R+  Y  AQLLG+V    +L   T        AL+   +GV    A   EI +T   V   +AT  + + G
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNG 155          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.537e-13
Identity = 57/175 (32.57%), Postives = 87/175 (49.71%), Query Frame = 2
Query:   47 PGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK------FST--GGLETSA--FALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            P   +  P E+      RA +AEF +  +F++    + M   +  +  A+   G+   + A    +F  V   A ISGGH+NPAVTFG F+   ++  R++ Y I Q LG++    ++K      + T  GG  T A  +   SG+GA      EI+ TF LVYT + +A D KR
Sbjct:   36 PPAPLFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKRAPNMCASV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPTPYQTLGGGANTVAHGYTKGSGLGA------EIIGTFVLVYTVF-SATDAKR 201          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: AQP2_HUMAN (Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.007e-13
Identity = 60/157 (38.22%), Postives = 80/157 (50.96%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSA-SIAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKRG 544
            RA  AEF + ++FVF G GS + +          P  L S   IA AF L +   V A  +ISG H+NPAVT    VG H++ +R+  Y  AQLLG+V    LL   T     G L  +  ALS+   A  AV  E+ +T  LV   +A + D +RG
Sbjct:   11 RAVFAEFLATLLFVFFGLGSALNW----------PQALPSVLQIAMAFGLGIGTLVQALGHISGAHINPAVTVACLVGCHVSVLRAAFYVAAQLLGAVAGAALLHEITPADIRGDLAVN--ALSNSTTAGQAVTVELFLTLQLVLCIFA-STDERRG 154          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.621e-13
Identity = 49/152 (32.24%), Postives = 73/152 (48.03%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVGAWNAVVFEIVMTFGLVYTGYATAVDPKRG 544
            RA  AEFF  + +VF G G+ + +       A  PA ++  ++A    L   V    ++SG H+NPAVTF   +G  ++  R+I Y  AQLLG+V    +L   T        AL++   GV    A   EI +T   V   +AT  + + G
Sbjct:   11 RAVFAEFFGTMFYVFFGLGASLKW-------AAGPANVLVIALAFGLVLATMVQSIGHVSGAHINPAVTFAFLIGSQMSLFRAIFYIAAQLLGAVAGAAVLYGVTPAAIRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNG 155          
The following BLAST results are available for this feature:
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
MIP_RAT5.282e-1434.21Lens fiber major intrinsic protein (Fragment) OS=R... [more]
PIP12_MAIZE6.898e-1434.32Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
MIP_CAVPO9.010e-1433.55Lens fiber major intrinsic protein OS=Cavia porcel... [more]
MIP_CANFA9.010e-1435.71Lens fiber major intrinsic protein OS=Canis famili... [more]
AQP2_SHEEP9.010e-1436.13Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1[more]
PIP15_MAIZE1.177e-1334.87Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
MIP_MOUSE1.177e-1333.55Lens fiber major intrinsic protein OS=Mus musculus... [more]
PIP14_ARATH1.537e-1332.57Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
AQP2_HUMAN2.007e-1338.22Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1[more]
MIP_RANPI2.621e-1332.24Lens fiber major intrinsic protein OS=Rana pipiens... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00147 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00147 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623056 ID=BQ623056; Name=BQ623056; organism=Citrus sinensis; type=EST; length=642bp
AGAGCTCGAAGCTAAAACTAAAACTTGCCAAGAAAATTAAAAAATGCCCG
GAATTGCTATCGGAAACCCGGCTGAGATCGGCCAGCCCGATGCCCTTAGG
GCGGCTGTCGCTGAGTTTTTCTCCATGGTCATTTTTGTTTTTGCCGGCCA
AGGGTCTGGCATGGCTTACAGCAAGCTCACGGACAATGGAGCAACAACAC
CAGCAGGTCTAGTGTCAGCATCAATAGCTCATGCATTTGCCCTCTTCGTG
GCAGTTTCTGTTGGCGCCAACATCTCCGGTGGACACGTGAACCCCGCTGT
TACTTTCGGTGCCTTTGTTGGCGGCCACATTACATTTGTCAGGAGTATTT
TGTACTGGATTGCCCAGTTACTCGGATCTGTTGTTGCTTGCTTGCTTCTC
AAGTTCTCCACTGGTGGATTGGAAACATCTGCTTTTGCCCTGTCATCTGG
AGTTGGTGCATGGAATGCAGTTGTGTTTGAGATTGTGATGACCTTTGGAC
TGGTCTACACGGGGTATGCCACAGCTGTTGACCCAAAGAGGGGAAACATT
GGCATCATTGCACCAATTGCAATTGGGTTATTGGTGGGGCCCACATCTTG
GCTGGGGGGGCCTTTGATGGGGCATCGATGACCCCTGAGTTT
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