BQ623056

Overview
NameBQ623056
Unique NameBQ623056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623056_ssr384 microsatellite BQ623056_ssr384:384..395. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.424e-13
Identity = 51/152 (33.55%), Postives = 73/152 (48.03%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVGAWNAVVFEIVMTFGLVYTGYATAVDPKRG 544
            RA  AEFF+ + +VF G GS + +       A  P  ++  ++A   AL   V    +ISG HVNPAVTF   VG  ++ +R+  Y  AQLLG+V    +L   T        AL++    V    A   EI +T   V   +AT  + + G
Sbjct:   11 RAIFAEFFATLFYVFFGLGSSLRW-------APGPLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNG 155          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.840e-13
Identity = 55/168 (32.74%), Postives = 85/168 (50.60%), Query Frame = 2
Query:   68 PAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK------FST--GGLETSA--FALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            P E+      RA +AEF +  +F++    + M   +  +  A+   G+   + A    +F  V   A ISGGH+NPAVTFG F+   ++  R++ Y + Q LG++    ++K      + T  GG  T A  +   SG+GA      EI+ TF LVYT + +A D KR
Sbjct:   42 PGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKRAPNMCASV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVKGFQPNPYQTLGGGANTVAHGYTKGSGLGA------EIIGTFVLVYTVF-SATDAKR 200          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.627e-13
Identity = 53/169 (31.36%), Postives = 82/169 (48.52%), Query Frame = 2
Query:   47 PGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETS----AFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            P   +   +E+      RA +AEF +  +F++    + M  SK      T   G+   + A    +F  V   A +SGGH+NPAVTFG  +   ++  R++ Y + Q LG+V    ++K     L  S    A A+S G    + +  E+V TF LVYT + +A D KR
Sbjct:   43 PAAPLFEASELSSWSFYRAGIAEFVATFLFLYVTVLTVMGVSKSPSKCGTV--GIQGIAWAFGGMIFALVYCTAGVSGGHINPAVTFGLLLARKLSLTRAVYYVVMQCLGAVCGAGVVKAFGSALYESAGGGANAVSPGYTKGDGLGAEVVGTFVLVYTVF-SATDAKR 208          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.961e-13
Identity = 53/170 (31.18%), Postives = 84/170 (49.41%), Query Frame = 2
Query:   47 PGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLL-----KFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            P   +  P+E+      RA +AEF +  +F++    + M   + +    T   G+   + A    +F  V   A ISGGH+NPAVTFG F+   ++  R+I Y + Q+LG++    ++     K   G L   A  ++ G    + +  EIV TF LVYT + +A D KR
Sbjct:   38 PPAPLFEPSELTSWSFYRAGIAEFIATFLFLYITVLTVMGVVRESSKCKTV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQVLGAICGAGVVKGFEGKQRFGDLNGGANFVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKR 204          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.961e-13
Identity = 51/169 (30.18%), Postives = 83/169 (49.11%), Query Frame = 2
Query:   47 PGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK-FSTG---GLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            P   +  P E+      RA +AEF +  +F++    + M   +   +   +  G+   + A    +F  V   A ISGGH+NPAVTFG F+   ++  R++ Y + Q LG++    ++K F  G    L   A  ++ G    + +  EI+ TF LVYT + +A D KR
Sbjct:   36 PPAPLFEPGELSSWSFYRAGIAEFMATFLFLYITILTVMGLKR--SDSLCSSVGIQGVAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQCLGAICGAGVVKGFMVGPYQRLGGGANVVNPGYTKGDGLGAEIIGTFVLVYTVF-SATDAKR 201          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.961e-13
Identity = 52/162 (32.10%), Postives = 84/162 (51.85%), Query Frame = 2
Query:   68 PAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK-FSTGGLETS---AFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            P E+      RA +AEF +  +F++    + M   +  +  A+   G+   + A    +F  V   A ISGGH+NPAVTFG F+   ++  R++ Y + Q LG++    ++K F  G  +T+   A  ++ G    + +  EIV TF LVYT + +A D KR
Sbjct:   43 PGELKSWSFYRAGIAEFIATFLFLYVTVLTVMGVKRAPNMCASV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQCLGAICGAGVVKGFQPGLYQTNGGGANVVAHGYTKGSGLGAEIVGTFVLVYTVF-SATDAKR 201          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.961e-13
Identity = 52/152 (34.21%), Postives = 79/152 (51.97%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK-FSTG---GLETSAFALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            RA +AEF +  +F++    + M  +K     AT   G+   + +    +F  V   A ISGGH+NPAVTFG F+   ++  R++ Y   Q LG++    ++K F  G   G    A A++ G    + +  EIV TF LVYT + +A D KR
Sbjct:   54 RAGIAEFVATFLFLYISILTVMGVNKSASKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMAMQCLGAICGAGVVKGFQRGLYMGSGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVF-SATDAKR 202          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.699e-12
Identity = 55/175 (31.43%), Postives = 85/175 (48.57%), Query Frame = 2
Query:   47 PGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK--------FSTGGLETSA--FALSSGVGAWNAVVFEIVMTFGLVYTGYATAVDPKR 541
            P   +  P E+      RA +AEF +  +F++    + M   +  +  A+   G+   + A    +F  V   A ISGGH+NPAVTFG F+   ++  R++ Y + Q LG++    ++K           GG  T A  +   SG+GA      EI+ TF LVYT + +A D KR
Sbjct:   35 PPAPLFEPGELASWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTIAHGYTKGSGLGA------EIIGTFVLVYTVF-SATDAKR 200          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.219e-12
Identity = 44/138 (31.88%), Postives = 69/138 (50.00%), Query Frame = 2
Query:   98 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGL---ETSAFALSSGVGAWNAVVFEIVMTFGL 502
            +A  AEF + +IFVF G GS + +             ++  SIA   A+         +SGGH+NPA+T    +G  I+ +R+I Y  AQL+G++    +L +   G      +  ALS+      AVV E+++TF L
Sbjct:   12 KAVFAEFLATLIFVFFGLGSALKWPSALPT-------ILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAIFYVAAQLVGAIAGAGILYWLAPGNARGNLAVNALSNNTTPGKAVVVELILTFQL 142          
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Match: AQP5_SHEEP (Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.898e-12
Identity = 43/139 (30.94%), Postives = 71/139 (51.08%), Query Frame = 2
Query:   95 LRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLL---LKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGL 502
            L+A  AEF + +IFVF G GS + +     +       ++  S+A   A+         +SGGH+NPA+T    VG  I+ +R++ Y +AQL+G++    +   L         +  AL++   A  AVV E+++TF L
Sbjct:   11 LKAVFAEFLATLIFVFFGLGSALKWPSAMPS-------VLQISLAFGLAIGTMAQALGPVSGGHMNPAITLALLVGNQISLLRAVFYLVAQLVGAIAGAAILYGLAPYNARSNLAVNALNNNTTAGQAVVAEMILTFQL 142          
The following BLAST results are available for this feature:
BLAST of BQ623056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
MIP_HUMAN3.424e-1333.55Lens fiber major intrinsic protein OS=Homo sapiens... [more]
PIP13_ARATH5.840e-1332.74Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP16_MAIZE7.627e-1331.36Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
PIP2_PEA9.961e-1331.18Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP1_SOLLC9.961e-1330.18Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP15_ARATH9.961e-1332.10Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP13_ORYSJ9.961e-1334.21Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP12_ARATH1.699e-1231.43Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
AQP5_MOUSE2.219e-1231.88Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]
AQP5_SHEEP2.898e-1230.94Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00147 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00147 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623056 ID=BQ623056; Name=BQ623056; organism=Citrus sinensis; type=EST; length=642bp
AGAGCTCGAAGCTAAAACTAAAACTTGCCAAGAAAATTAAAAAATGCCCG
GAATTGCTATCGGAAACCCGGCTGAGATCGGCCAGCCCGATGCCCTTAGG
GCGGCTGTCGCTGAGTTTTTCTCCATGGTCATTTTTGTTTTTGCCGGCCA
AGGGTCTGGCATGGCTTACAGCAAGCTCACGGACAATGGAGCAACAACAC
CAGCAGGTCTAGTGTCAGCATCAATAGCTCATGCATTTGCCCTCTTCGTG
GCAGTTTCTGTTGGCGCCAACATCTCCGGTGGACACGTGAACCCCGCTGT
TACTTTCGGTGCCTTTGTTGGCGGCCACATTACATTTGTCAGGAGTATTT
TGTACTGGATTGCCCAGTTACTCGGATCTGTTGTTGCTTGCTTGCTTCTC
AAGTTCTCCACTGGTGGATTGGAAACATCTGCTTTTGCCCTGTCATCTGG
AGTTGGTGCATGGAATGCAGTTGTGTTTGAGATTGTGATGACCTTTGGAC
TGGTCTACACGGGGTATGCCACAGCTGTTGACCCAAAGAGGGGAAACATT
GGCATCATTGCACCAATTGCAATTGGGTTATTGGTGGGGCCCACATCTTG
GCTGGGGGGGCCTTTGATGGGGCATCGATGACCCCTGAGTTT
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