BQ623087

Overview
NameBQ623087
Unique NameBQ623087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8171 contig Csv1_Contig8171:173..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: VATA_METJA (V-type ATP synthase alpha chain OS=Methanocaldococcus jannaschii GN=atpA PE=3 SV=2)

HSP 1 Score: 298.516 bits (763), Expect = 2.337e-80
Identity = 150/239 (62.76%), Postives = 182/239 (76.15%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY-STALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMR 715
            +M RT L+ANTSNMPVAAREAS+YTGITIAEYFRDMGY V + ADSTSRWAEA+REISGRL EMP + GYPAYLA+RLA FYERAG+V  LG   R G V IVGAVSPPGGDFS+PVTS TL IV+VFW LD  LA+R+HFP++NWL SYS Y     E +     PD+  +R +A  +LQ+E +L EIVQLVG DAL + +++ LE A++LRED+L Q+AF   D +CP  K   M++
Sbjct:  287 LMDRTVLIANTSNMPVAAREASVYTGITIAEYFRDMGYGVLLTADSTSRWAEAMREISGRLEEMPGEEGYPAYLASRLAQFYERAGRVITLGKDNRQGFVCIVGAVSPPGGDFSEPVTSNTLRIVKVFWALDANLARRRHFPAINWLQSYSLYIDDVTEWWNTNTGPDWRQLRDEAMSLLQKEAELQEIVQLVGPDALPDRERVILEVARMLREDFLQQDAFDEVDTYCPPMKQYLMLK 525          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: VATA_METMA (V-type ATP synthase alpha chain OS=Methanosarcina mazei GN=atpA PE=1 SV=2)

HSP 1 Score: 298.13 bits (762), Expect = 3.052e-80
Identity = 148/239 (61.92%), Postives = 185/239 (77.41%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALES-FYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMR 715
            +M+RT LVANTSNMPVAAREAS+YTG+T+AEYFRDMGY+VS+MADSTSRWAEA+REIS RL EMP + GYPAYL+ARLA FYERAG  + L G +  GS+T +GAVSPPGGDFS+PVT  TL IV+VFW LD KL+Q++HFP++NWL SYS Y   L   F E   PD++ +R +A ++LQ E +L EIVQLVG DAL E  ++ LE  +++RE +L QNAF P D + PF K   +M+
Sbjct:  281 LMERTILVANTSNMPVAAREASVYTGMTLAEYFRDMGYDVSLMADSTSRWAEAMREISSRLEEMPGEEGYPAYLSARLAEFYERAGVAETLCGEK--GSITAIGAVSPPGGDFSEPVTQNTLRIVKVFWALDAKLSQKRHFPAINWLNSYSLYKEDLNDWFTENVAPDYVPMRERAMDMLQTESELQEIVQLVGSDALPEEQQLLLEITRMIREIFLQQNAFHPIDTYSPFEKQYKIMK 517          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: VATA_METTH (V-type ATP synthase alpha chain OS=Methanobacterium thermoautotrophicum GN=atpA PE=3 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 3.986e-80
Identity = 144/240 (60.00%), Postives = 186/240 (77.50%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRT 718
            +M RT L+ANTSNMPVAAREA +YTGITIAEYFRDMGY+V++MADSTSRWAEA+REISGRL EMP + GYPAYLA+RLA FYERAG+V  +G  ++  SV++VGAVSPPGGD S+PVT  TL I +VFW LD  LA ++HFPS++WL SYS Y  +++ ++    DP++   R +A  +LQ+E +L EIVQLVG DAL + ++ITLET +++RED+L QNA+   D +C   K   M+RT
Sbjct:  286 LMDRTVLIANTSNMPVAAREACVYTGITIAEYFRDMGYDVALMADSTSRWAEAMREISGRLEEMPGEEGYPAYLASRLAQFYERAGRVTTIGSEDKIASVSVVGAVSPPGGDLSEPVTQNTLRICKVFWALDASLADKRHFPSIDWLQSYSLYIDSVQEWWASNVDPEWRKFRDEAMALLQKEAELQEIVQLVGPDALPDRERITLETTRMIREDFLQQNAYHEVDTYCSPSKQFEMLRT 525          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: VATA_METS3 (V-type ATP synthase alpha chain OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=atpA PE=3 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 5.206e-80
Identity = 146/240 (60.83%), Postives = 182/240 (75.83%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRT 718
            +M RT L+ANTSNMPVAAREA +YTGITIAEY+RD GY+V++MADSTSRWAEA+REISGRL EMP + GYPAYLA+RLA FYERAG+V  +G      S+T+VGAVSPPGGD S+PVT  TL I +VFW LD  LA ++HFPS++WL SYS Y  ++E ++ E    D+   R +A  +LQ+E +L EIVQLVG DAL E D+ TLET ++LRED+L QNAF   D +CP  K   M++T
Sbjct:  286 LMDRTVLIANTSNMPVAAREACVYTGITIAEYYRDQGYDVALMADSTSRWAEAMREISGRLEEMPGEEGYPAYLASRLAQFYERAGRVNTIGTTSDVASITVVGAVSPPGGDLSEPVTQNTLRICKVFWALDASLADKRHFPSIDWLQSYSLYVDSIEGWWAENVAADWRETRDQAMILLQKESELQEIVQLVGPDALPEADQATLETTRMLREDFLQQNAFDDIDTYCPPVKQYNMLKT 525          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: VATA_CLOBB (V-type ATP synthase alpha chain OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=atpA PE=3 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 6.799e-80
Identity = 147/238 (61.76%), Postives = 183/238 (76.89%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYE-QFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMM 712
            +MKRT L+ANTSNMPVAAREASIYTGITIAEYFRDMGY+VS+MADSTSRWAEALRE+SGRL EMP D GYPAYL +RLA +YERAGKV+CLG   R GS+T +GAVSPPGGD S+PV+ +TL IV+VFWGLD +LA ++HFP++NWL SYS Y+  ++ +       ++  +R +A  +LQ E  L EIV+LVG DAL+E D++ L+ AK +REDYL QN F   D +    K   M+
Sbjct:  285 LMKRTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYSVSIMADSTSRWAEALREMSGRLEEMPGDEGYPAYLGSRLADYYERAGKVECLGNDGRIGSITAIGAVSPPGGDISEPVSQSTLRIVKVFWGLDAQLAYQRHFPTINWLTSYSLYADTIDKWMNGNVAENWGALRLEAMTILQDEAQLQEIVRLVGIDALSEKDRLKLDVAKSIREDYLQQNGFHEIDTYTSLKKQYKML 522          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: VATA_CLOD6 (V-type ATP synthase alpha chain OS=Clostridium difficile (strain 630) GN=atpA PE=3 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 8.879e-80
Identity = 145/238 (60.92%), Postives = 187/238 (78.57%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMM 712
            +M+RT L+ANTS+MPVAAREASIYTGITIAEYFRDMGY+V++MADSTSRWAEALRE+SGRL EMP + GYPAYL +RLA FYERAGKV CLG  ER G++T +GAVSPPGGD S+PV+ ATL IV+VFWGLD  LA ++HFP++NWL SYS Y   ++ + ++  + +F   R +A ++LQ E +L EIVQLVG D+L++GD++ LE  + +RED+L QN+F   D +   +K   MM
Sbjct:  285 LMQRTVLIANTSDMPVAAREASIYTGITIAEYFRDMGYSVALMADSTSRWAEALREMSGRLEEMPGEEGYPAYLGSRLAQFYERAGKVNCLGMDEREGTLTAIGAVSPPGGDTSEPVSQATLRIVKVFWGLDASLAYKRHFPAINWLTSYSLYQEKVDVWADKNVNDNFSAQRAQAMKLLQVESELQEIVQLVGVDSLSDGDRLILEVTRSIREDFLHQNSFHEVDTYTSLHKQYRMM 522          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: VATA_UNCMA (V-type ATP synthase alpha chain OS=Uncultured methanogenic archaeon RC-I GN=atpA PE=3 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.160e-79
Identity = 147/240 (61.25%), Postives = 187/240 (77.92%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRT 718
            +M RT L+ANTSNMPVAAREAS YTGITIAEY+RDMGY VS+MADSTSRWAEA+REIS RL EMP + GYPAYLAARL+ FYERAG+V    G E  GSVT++GAVSP GGD S+PVT  TL IV+VFW LD KLAQR+HFPS+NWL SYS Y  +L+ +Y++   P++  ++ ++ E+LQRE +L EIVQLVG DAL E  ++T+E A+++RE +L QNA+   D +C   K + M+++
Sbjct:  282 LMDRTVLIANTSNMPVAAREASCYTGITIAEYYRDMGYGVSLMADSTSRWAEAMREISSRLEEMPGEEGYPAYLAARLSEFYERAGRVITPIGKE--GSVTVIGAVSPAGGDISEPVTQNTLRIVKVFWALDAKLAQRRHFPSINWLNSYSLYQDSLKDWYDKNISPEWNQLKAESMELLQRESELQEIVQLVGSDALPEDQQLTIEIARMIREIFLQQNAYHEVDTYCSLDKQLKMLKS 519          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: VATA_HYPBU (V-type ATP synthase alpha chain OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=atpA PE=3 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.160e-79
Identity = 142/228 (62.28%), Postives = 182/228 (79.82%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY-STALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKF 682
            +M+RT L+ANTSNMPVAAREASIYTGIT+AEY+RDMGY+V ++ADSTSRWAEALREI+GRL EMPA+ GYP+YLA+RLA FY RAG+VK  G PER GSVTIVGAVSPPGGDF++PVT+ T   ++VFW LD +LA  +H+P++NWL+SYS Y  T  + ++E   P ++  R +A E+L RED+L EIV+LVG + L+E DK+ LE A +++  +L QNAF P D F
Sbjct:  289 MMERTILIANTSNMPVAAREASIYTGITLAEYYRDMGYDVLLVADSTSRWAEALREIAGRLEEMPAEEGYPSYLASRLAEFYARAGRVKVPGRPERLGSVTIVGAVSPPGGDFTEPVTANTKRFIRVFWALDARLAYSRHYPAINWLVSYSAYVETVAKWWHENISPKWLEYRNEAYEILLREDELREIVRLVGTEGLSEKDKLILEIANIIKTGFLQQNAFDPVDAF 516          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: VATA_CLOBA (V-type ATP synthase alpha chain OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=atpA PE=3 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.515e-79
Identity = 147/238 (61.76%), Postives = 182/238 (76.47%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYE-QFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMM 712
            +MKRT L+ANTSNMPVAAREASIYTGITIAEYFRDMGY VS+MADSTSRWAEALRE+SGRL EMP D GYPAYL +RLA +YERAGKV+CLG   R GS+T +GAVSPPGGD S+PV+ +TL IV+VFWGLD +LA ++HFP++NWL SYS Y+  ++ +       ++  +R +A  +LQ E  L EIV+LVG DAL+E D++ L+ AK +REDYL QN F   D +    K   M+
Sbjct:  285 LMKRTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYAVSIMADSTSRWAEALREMSGRLEEMPGDEGYPAYLGSRLADYYERAGKVECLGNDGRIGSITAIGAVSPPGGDISEPVSQSTLRIVKVFWGLDAQLAYQRHFPTINWLTSYSLYADTIDKWMNGNVAENWGALRLEAMTILQDEAQLQEIVRLVGIDALSEKDRLKLDVAKSIREDYLQQNGFHEIDTYTSLKKQYKML 522          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: VATA_STAMF (V-type ATP synthase alpha chain OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=atpA PE=3 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 1.978e-79
Identity = 143/239 (59.83%), Postives = 186/239 (77.82%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY-STALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMR 715
            +++R+  +ANTSNMPVAARE SI+ G TI EYFRDMGY+V M+ADSTSRWAEA+REISGRL E+P + GYPAYL +RLASFYER+G VK LG P+RTGS+TI+GAVSPPG DFS+PVT ATL IV+  + LD  LA R+H+P++NWLISYS Y     + +++  DP +  +R KA  +LQ+E +L E+V+LVG +AL E DK+ LE A+++RED+L QNAF   D +CP  K+V MM+
Sbjct:  284 LVERSVFIANTSNMPVAARETSIFLGATIGEYFRDMGYHVLMVADSTSRWAEAMREISGRLEELPGEEGYPAYLGSRLASFYERSGYVKTLGRPDRTGSLTIMGAVSPPGADFSEPVTQATLRIVRALYALDVNLAYRRHYPAINWLISYSLYVDNVTDWWHKNIDPSWRELREKALAILQKEAELEELVRLVGAEALPEEDKLLLEVARMIREDFLQQNAFHEIDTYCPPRKAVLMMK 522          
The following BLAST results are available for this feature:
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
VATA_METJA2.337e-8062.76V-type ATP synthase alpha chain OS=Methanocaldococ... [more]
VATA_METMA3.052e-8061.92V-type ATP synthase alpha chain OS=Methanosarcina ... [more]
VATA_METTH3.986e-8060.00V-type ATP synthase alpha chain OS=Methanobacteriu... [more]
VATA_METS35.206e-8060.83V-type ATP synthase alpha chain OS=Methanobrevibac... [more]
VATA_CLOBB6.799e-8061.76V-type ATP synthase alpha chain OS=Clostridium bot... [more]
VATA_CLOD68.879e-8060.92V-type ATP synthase alpha chain OS=Clostridium dif... [more]
VATA_UNCMA1.160e-7961.25V-type ATP synthase alpha chain OS=Uncultured meth... [more]
VATA_HYPBU1.160e-7962.28V-type ATP synthase alpha chain OS=Hyperthermus bu... [more]
VATA_CLOBA1.515e-7961.76V-type ATP synthase alpha chain OS=Clostridium bot... [more]
VATA_STAMF1.978e-7959.83V-type ATP synthase alpha chain OS=Staphylothermus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00178 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00178 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623087 ID=BQ623087; Name=BQ623087; organism=Citrus sinensis; type=EST; length=719bp
TGTCATGAAGCGTACAACACTTGTGGCCAACACTTCTAACATGCCTGTGG
CTGCTCGTGAGGCTTCGATTTATACAGGAATCACCATAGCTGAATATTTC
AGAGATATGGGGTACAATGTTAGCATGATGGCAGATTCAACTTCTCGTTG
GGCAGAAGCGTTGCGTGAAATTTCAGGACGGCTGGCAGAAATGCCTGCAG
ATAGTGGATATCCTGCTTACCTGGCTGCACGTTTGGCCTCATTTTATGAA
CGTGCTGGGAAAGTTAAATGTCTTGGTGGACCAGAACGTACTGGTAGTGT
CACAATTGTTGGTGCAGTTTCTCCTCCTGGAGGAGATTTCTCAGATCCTG
TAACATCTGCCACCCTCAGCATTGTGCAGGTCTTCTGGGGTCTGGATAAG
AAACTTGCGCAGAGAAAGCATTTTCCTTCTGTAAACTGGCTTATTTCTTA
CTCGAAGTATTCAACAGCATTAGAGTCTTTCTATGAGCAATTTGATCCGG
ATTTTATTAACATCAGGACAAAGGCTAGAGAGGTGCTGCAGAGAGAAGAT
GACCTGAATGAAATTGTGCAACTTGTCGGAAAGGATGCTTTGGCTGAAGG
AGATAAGATTACGCTAGAGACTGCTAAGCTTTTGAGGGAGGACTATCTTG
CTCAAAACGCATTTACTCCATATGACAAGTTCTGCCCTTTCTACAAGTCT
GTTTGGATGATGCGTACAT
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