BQ623088

Overview
NameBQ623088
Unique NameBQ623088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: COPA_STAAC (Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain COL) GN=copA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.145e-14
Identity = 61/195 (31.28%), Postives = 99/195 (50.77%), Query Frame = 1
Query:   10 HPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGR-GFVHAALSVNEKVT-LIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            HP+  A+V+++  K L       F+  PG G+ AT++       G ++L A     D   SL K   +        + + Y R G     ++VN  +T +I + D  +    D I +L D   + V MLTGD++++AQ +A  VGI+ V   + PE+K   + +  +  G  + MVG+G+NDAPAL  A +GI +
Sbjct:  529 HPLAEAIVNYAKEKQLILTETTTFKAVPGHGIEATIDHHHI-LVGNRKLMA-----DNDISLPKHISD--------DLTHYERDGKTAMLIAVNYSLTGIIAVADTVKDHAKDAIKQLHDMG-IEVAMLTGDNKNTAQAIAKQVGIDTVIADILPEEKAAQI-AKLQQQGKKVAMVGDGVNDAPALVKADIGIAI 707          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: COPA_STAAB (Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=copA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.145e-14
Identity = 61/195 (31.28%), Postives = 99/195 (50.77%), Query Frame = 1
Query:   10 HPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGR-GFVHAALSVNEKVT-LIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            HP+  A+V+++  K L       F+  PG G+ AT++       G ++L A     D   SL K   +        + + Y R G     ++VN  +T +I + D  +    D I +L D   + V MLTGD++++AQ +A  VGI+ V   + PE+K   + +  +  G  + MVG+G+NDAPAL  A +GI +
Sbjct:  529 HPLAEAIVNYAKEKQLTLTETTTFKAVPGHGIEATIDHHHI-LVGNRKLMA-----DNDISLPKHISD--------DLTHYERDGKTAMLIAVNYSLTGIIAVADTLKNHAKDAIKQLHDMG-IEVAMLTGDNKNTAQAIAKQVGIDTVIADILPEEKAAQI-AKLQQQGKKVAMVGDGVNDAPALVKADIGIAI 707          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: COPA_STAA8 (Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain NCTC 8325) GN=copA PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.145e-14
Identity = 61/195 (31.28%), Postives = 99/195 (50.77%), Query Frame = 1
Query:   10 HPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGR-GFVHAALSVNEKVT-LIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            HP+  A+V+++  K L       F+  PG G+ AT++       G ++L A     D   SL K   +        + + Y R G     ++VN  +T +I + D  +    D I +L D   + V MLTGD++++AQ +A  VGI+ V   + PE+K   + +  +  G  + MVG+G+NDAPAL  A +GI +
Sbjct:  529 HPLAEAIVNYAKEKQLILTETTTFKAVPGHGIEATIDHHHI-LVGNRKLMA-----DNDISLPKHISD--------DLTHYERDGKTAMLIAVNYSLTGIIAVADTVKDHAKDAIKQLHDMG-IEVAMLTGDNKNTAQAIAKQVGIDTVIADILPEEKAAQI-AKLQQQGKKVAMVGDGVNDAPALVKADIGIAI 707          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: COPA_ECOLI (Copper-exporting P-type ATPase A OS=Escherichia coli (strain K12) GN=copA PE=1 SV=4)

HSP 1 Score: 78.9518 bits (193), Expect = 2.145e-14
Identity = 68/199 (34.17%), Postives = 101/199 (50.75%), Query Frame = 1
Query:    1 GTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEK-VTLIHLEDRPRPGVSDVIAELK--DHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            G++HP+ RA++D +    LP V+  R      RGL     G+    EG   L   LG+     +L   +    K  EA   +   +G     L+V+ K V L+ + D  R   SD +A L+    A  R++MLTGD+ ++A  +A   GI+EV   + P+ K   +K    + G  + MVG+GINDAPALA A VGI +
Sbjct:  559 GSSHPLARAILDKAGDMQLPQVNGFRTL----RGL-----GVSGEAEGHALL---LGN----QALLNEQQVGTKAIEAEITAQASQGATPVLLAVDGKAVALLAVRDPLR---SDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGVLPDGKAEAIKHLQSE-GRQVAMVGDGINDAPALAQADVGIAM 737          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: ATCU2_RHIME (Copper-transporting ATPase 2 OS=Rhizobium meliloti GN=actP2 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.145e-14
Identity = 55/193 (28.50%), Postives = 95/193 (49.22%), Query Frame = 1
Query:   10 HPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            HPI  A+V  +  K + + +++ FE  PG G++ +V+G +      + L  +              D S    EA    + G+  ++AA+       ++ + D  +      I  L +   L+V M+TGD+  +A+ +A  +GI+EV   + PE K+  ++   R  G  +  +G+GINDAPALA A VGI +
Sbjct:  554 HPIAEAIVSAAKSKGIATAAVNGFEATPGFGVSGSVSGRQVLVGADRALATN------------GIDVSGFSTEAELLGASGKSPLYAAIE-GRLAAIVAVSDPVKETTPQAIRSLHELG-LKVAMITGDNRRTAEAIARKLGIDEVVAEVLPEGKVEAIRKL-RQGGRSVAFIGDGINDAPALAEADVGIAV 731          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: CTPA_MYCTU (Cation-transporting P-type ATPase A OS=Mycobacterium tuberculosis GN=ctpA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.802e-14
Identity = 62/196 (31.63%), Postives = 95/196 (48.47%), Query Frame = 1
Query:   25 AVVDHSIGKDLPSVSIDR-----FEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFI-TSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVLAQ 594
            A  +HS+   + + +  R     F   PGRG++ TV+G              +G   +I +S C     + +     +A S G   V   +   E   +I + D  +    D +A L D   LR M+LTGD+  SA  VA  VGI+EV   + PE K++ ++   RD G  + MVG+GIND PALA A +G+ + +
Sbjct:  478 AASEHSVALAIAAATTRRDAVTDFRAIPGRGVSGTVSG----------RAVRVGKPSWIGSSSCHPNMRAARR----HAESLGETAVFVEVD-GEPCGVIAVADAVKDSARDAVAALADRG-LRTMLLTGDNPESAAAVATRVGIDEVIADILPEGKVDVIEQL-RDRGHVVAMVGDGINDGPALARADLGMAIGR 656          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: COPA_STAAT (Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=copA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.802e-14
Identity = 61/195 (31.28%), Postives = 99/195 (50.77%), Query Frame = 1
Query:   10 HPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGR-GFVHAALSVNEKVT-LIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            HP+  A+V+++  K L       F+  PG G+ AT++       G ++L A     D   SL K   +        + + Y R G     ++VN  +T +I + D  +    D I +L D   + V MLTGD++++AQ +A  VGI+ V   + PE+K   + +  +  G  + MVG+G+NDAPAL  A +GI +
Sbjct:  529 HPLAEAIVNYAKEKQLILTETTTFKAVPGHGIEATIDH-HYILVGNRKLMA-----DNDISLPKHISD--------DLTHYERDGKTAMLIAVNYSLTGIIAVADTVKDHAKDAIKQLHDMG-IEVAMLTGDNKNTAQAIAKQVGIDTVIADILPEEKAAQI-AKLQQQGKKVAMVGDGVNDAPALVKADIGIAI 707          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: COPA_STAA3 (Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain USA300) GN=copA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.802e-14
Identity = 61/195 (31.28%), Postives = 99/195 (50.77%), Query Frame = 1
Query:   10 HPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGR-GFVHAALSVNEKVT-LIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            HP+  A+V+++  K L       F+  PG G+ AT++       G ++L A     D   SL K   +        + + Y R G     ++VN  +T +I + D  +    D I +L D   + V MLTGD++++AQ +A  VGI+ V   + PE+K   + +  +  G  + MVG+G+NDAPAL  A +GI +
Sbjct:  529 HPLAEAIVNYAKEKQLILTETTTFKAVPGHGIEATIDH-HYILVGNRKLMA-----DNDISLPKHISD--------DLTHYERDGKTAMLIAVNYSLTGIIAVADTVKDHAKDAIKQLHDMG-IEVAMLTGDNKNTAQAIAKQVGIDTVIADILPEEKAAQI-AKLQQQGKKVAMVGDGVNDAPALVKADIGIAI 707          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: ATKB_HALSA (Potassium-transporting ATPase B chain OS=Halobacterium salinarium GN=kdpB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.659e-14
Identity = 60/186 (32.26%), Postives = 96/186 (51.61%), Query Frame = 1
Query:   34 DHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLI-MVGEGINDAPALAAATVGIVL 588
            D S+  D   +S   F  F      + ++ +  GTE  K      G+VD +     +     K+++  NA S   G   A     + V +I L+D  +PG++D IAE++    +  +M TGD++ +A+ VA+ VGI+E +    PE+K+  V+    D  G L+ M G+G NDAPALA A VG+ +
Sbjct:  398 DVSVTLDAEGLSESNFVPFSAETRMSGID-LSDGTEIRK------GAVDAVEEYATTVPG--KLRQKSNAISESGGTPLAIAVDGQVVGIIELQDELKPGIADRIAEIQKMG-VETIMATGDNQRTARWVADQVGIDEFHAEFDPEEKIELVEDIQDD--GKLVGMTGDGTNDAPALAKADVGLAM 571          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: COPB_ENTHR (Copper-exporting P-type ATPase B OS=Enterococcus hirae GN=copB PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.779e-14
Identity = 66/194 (34.02%), Postives = 96/194 (49.48%), Query Frame = 1
Query:   10 HPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEK-VTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            HP+   ++++   K +        +   G GL ATV   +      KE K  LG         K + E  K  EA       +G   + L V++K V +I L D  +P   + I  +K+   + VM LTGD+  +AQ VA  +GINE Y  L P+DK   +     D G  +IMVG+GINDAP+LA AT+G+ +
Sbjct:  480 HPLAIGIMNYLKEKKITPYQAQEQKNLAGVGLEATVEDKDVKIINEKEAKR-LG--------LKIDPERLKNYEA-------QGNTVSFLVVSDKLVAVIALGDVIKPEAKEFIQAIKEKNIIPVM-LTGDNPKAAQAVAEYLGINEYYGGLLPDDK-EAIVQRYLDQGKKVIMVGDGINDAPSLARATIGMAI 655          
The following BLAST results are available for this feature:
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
COPA_STAAC2.145e-1431.28Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA_STAAB2.145e-1431.28Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA_STAA82.145e-1431.28Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA_ECOLI2.145e-1434.17Copper-exporting P-type ATPase A OS=Escherichia co... [more]
ATCU2_RHIME2.145e-1428.50Copper-transporting ATPase 2 OS=Rhizobium meliloti... [more]
CTPA_MYCTU2.802e-1431.63Cation-transporting P-type ATPase A OS=Mycobacteri... [more]
COPA_STAAT2.802e-1431.28Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA_STAA32.802e-1431.28Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
ATKB_HALSA3.659e-1432.26Potassium-transporting ATPase B chain OS=Halobacte... [more]
COPB_ENTHR4.779e-1434.02Copper-exporting P-type ATPase B OS=Enterococcus h... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00179 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00179 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623088 ID=BQ623088; Name=BQ623088; organism=Citrus sinensis; type=EST; length=608bp
GGTACTACCCACCCTATTGGAAGAGCTGTGGTTGACCATAGTATAGGCAA
GGACCTTCCTTCTGTATCAATTGACCGTTTTGAGTATTTTCCTGGTCGAG
GTCTCACAGCAACTGTAAATGGCATTGAGTCAGGAACTGAAGGGGGTAAA
GAATTGAAAGCATCTCTGGGTTCTGTAGATTTTATAACTTCTCTCTGTAA
ATCTGAAGATGAATCAAGAAAGATCAAGGAAGCTGTGAATGCTTCTTCTT
ATGGAAGGGGCTTTGTTCATGCTGCTCTTTCTGTTAATGAAAAGGTAACA
TTGATTCACCTCGAGGATAGGCCTCGCCCAGGAGTTTCAGATGTTATAGC
AGAATTAAAAGATCATGCAAGATTACGTGTGATGATGTTAACTGGTGACC
ATGAGTCTAGTGCGCAGAGAGTAGCAAATGCTGTTGGCATCAATGAAGTT
TACTGCAGCCTGAAGCCTGAGGATAAGCTCAATCATGTGAAGAGTACCTC
CAGGGATATGGGAGGAGGTTTGATCATGGTTGGTGAAGGCATTAATGATG
CGCCAGCACTCGCAGCTGCAACTGTGGGAATTGTTCTTGCTCAACGGGCT
AGTGCAAC
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