BQ623088

Overview
NameBQ623088
Unique NameBQ623088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: CADA_BACSU (Cadmium, zinc and cobalt-transporting ATPase OS=Bacillus subtilis GN=cadA PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.779e-14
Identity = 59/195 (30.26%), Postives = 92/195 (47.18%), Query Frame = 1
Query:   10 HPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDM--GGGLIMVGEGINDAPALAAATVGIVL 588
            HPI  +V   + GK L S  I+ +E   G G+ A VNG E    G K+L                  E  +I++  + ++     VH A+       +I + D  +   +  +A+LK     +  MLTGD + + + V   +GI EVY  L P+DK+  V++    +     LI VG+GIND P LA A +G+ +
Sbjct:  440 HPIAESV-RKAYGKMLSSDEIESYEEISGHGIFAKVNGTEI-LAGNKKLM-----------------EREQIEDVPDENA--GTIVHVAVDQRYAGAII-IADEIKEDAAQAVADLKSLGIKQTAMLTGDSKQTGEAVGKQLGIGEVYAELLPQDKVAQVEALEAKLLPSEKLIFVGDGINDTPVLARADIGVAM 612          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: CADA2_STAAU (Probable cadmium-transporting ATPase OS=Staphylococcus aureus GN=cadA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.779e-14
Identity = 55/196 (28.06%), Postives = 98/196 (50.00%), Query Frame = 1
Query:   10 HPIGRAVVDHSIGKDLP--SVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVT-LIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            HP+  A++  +   ++    V +  F    GRG+   ++G      G   L   L   DF      S +   K+K   N     +G     +  ++ +  +I + D  R    +VI +L      + +MLTGD++ +A+ +   VG++++   L P+DKL+++K    +  G + M+G+G+NDAPALAA+TVGI +
Sbjct:  532 HPLASAIMKKAEQDNITYSDVRVKDFTSITGRGIQGNIDGTTYYI-GSPRLFKELNVSDF------SLEFENKVKVLQN-----QGKTAMIIGTDQTILGVIAVADEVRETSKNVILKLHQLGIKQTIMLTGDNQGTAEAIGAHVGVSDIQSELLPQDKLDYIKKMKAE-HGNVAMIGDGVNDAPALAASTVGIAM 714          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: COPA_VIBCH (Copper-exporting P-type ATPase A OS=Vibrio cholerae GN=copA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 53/193 (27.46%), Postives = 96/193 (49.74%), Query Frame = 1
Query:   10 HPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            HP+ +A+ D++  +++  V I +F    GRGL A     ++   G        G +D   S+ +S  E    +     +   RG +   L++ + +         +P  +  + +L +   +  +MLTGDH S A  +A  +GI++V   + P+ K  H+++  +  G  + M+G+GINDAPALA A +GI +
Sbjct:  636 HPLAKAICDYAKQRNISPVEISQFTNQRGRGLLADYQN-QTVLVGSLAFMQEQG-IDL--SMAESTLEKFAAQAWTPVAVAYRGMLQGVLAIADPI---------KPTSAQAVRKLNELG-IHTVMLTGDHTSVANAIAKELGISQVIAQVLPDQKAQHIQAL-QQQGRKVAMIGDGINDAPALALADIGIAM 813          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: COPA_HELPY (Copper-transporting ATPase OS=Helicobacter pylori GN=copA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 57/197 (28.93%), Postives = 104/197 (52.79%), Query Frame = 1
Query:   10 HPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVTL--IHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVLAQ 594
            H I + +V+++   + P   +   +   G G++A     ++  +G KE+   +G+ +F   +   E +   I            FV  A+S  E   L    LED P+ GV + IA++K+   +   +L+GD+  + Q+ A  +GI+    + KP+DKLN +K   ++ G  ++MVG+G+NDAP+LA + V +V+A+
Sbjct:  472 HVIAKGIVEYAKEHNAPLKEMSGVKVKTGFGISA-----KTDYQGTKEI-IKVGNSEFFNPINTLEIKENGILV----------FVGRAISEKEDELLGAFVLEDLPKKGVKEHIAQIKNLG-INTFLLSGDNRENVQKCAFELGIDGYISNAKPQDKLNKIKEL-KEKGQIVMMVGDGLNDAPSLAMSDVAVVMAK 650          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: ATKB_BACCR (Potassium-transporting ATPase B chain OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=kdpB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.151e-14
Identity = 63/208 (30.29%), Postives = 112/208 (53.85%), Query Frame = 1
Query:   13 PIGRAVVDHSIGKDLPSVSIDRF-----EYFPGRGLTATVNGIESGTEGGKELKASLGSV-DFITSLCKSEDESRKIKEAVNASS---YGRGFVHAALSVNEKVT-LIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASA 606
            P GR+V+++  GK   S+S +R      E+ P +  T  ++G++   +G K  K ++GSV +++ S      +   I + VN  +      G     ++VN ++  LI+L+D  +PG+ +   +L+    ++ +M TGD+  +A  +A   G++E     KPEDK+  +K+  +D G  + M G+G NDAPALA A VG+ +    +A
Sbjct:  364 PEGRSVIEYVQGK---SISYNRELAEQGEFVPFKAETR-MSGVDL-QDGTKVRKGAVGSVIEWVQS------QGGTIPKDVNQKADFISKEGGTPLVVAVNNRIYGLIYLKDTVKPGMRERFEQLRQMG-IKTVMCTGDNPLTAATIAKEAGVDEFVAECKPEDKIAVIKA-EQDKGKLVAMTGDGTNDAPALAQADVGLAMNSGTTA 558          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: AHM3_ARATH (Putative cadmium/zinc-transporting ATPase 3 OS=Arabidopsis thaliana GN=HMA2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.151e-14
Identity = 60/205 (29.27%), Postives = 102/205 (49.76%), Query Frame = 1
Query:    4 TTHPIGRAVVDH--SIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVG--INEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASA 606
            ++HP+  AVVD+  S+  +    +++ ++ FPG G+   ++G E    G K + +  G +          D   K  + +       G+V+   ++     + +L D  R GV+  + ELK    +++ MLTGD+ ++A      +G  ++ V   L PEDK   +K   R+ G    MVG+G+NDAPALA A +GI +    SA
Sbjct:  429 SSHPMAAAVVDYARSVSVEPKPEAVEDYQNFPGEGIYGKIDGKEVYI-GNKRIASRAGCLSV-----PDIDVDTKGGKTI-------GYVYVGETL---AGVFNLSDACRSGVAQAMKELKSLG-IKIAMLTGDNHAAAMHAQEQLGNAMDIVRAELLPEDKSEIIKQLKREEGP-TAMVGDGLNDAPALATADIGISMGVSGSA 615          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: COPB_STAAU (Probable copper-transporting P-type ATPase B OS=Staphylococcus aureus GN=copB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 54/195 (27.69%), Postives = 100/195 (51.28%), Query Frame = 1
Query:    4 TTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            + HP+   +VD + GK++   +       PG GL  TV+         K+LK     +  ++ L KS  +  K ++  N +  G    +  +   + + +I   D+ +     ++++L     +  +MLTGD++  AQ VA  +GI++V+  L PEDK + ++    + G  ++MVG+GINDAP+L  A +G+ +
Sbjct:  403 SNHPLATGIVDFAKGKNISYATPQEVNNIPGVGLEGTVDN--------KKLK-----IVNVSYLDKSNFDYNK-EQFTNLAQQGNSISYL-IHDRQVIGIIAQGDKIKESSKQMVSDLLSR-NITPVMLTGDNKEVAQTVAEELGISDVHAQLMPEDKESIIQDYQSN-GSKIMMVGDGINDAPSLIRADIGMAI 580          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: COPB_STAAR (Probable copper-transporting P-type ATPase B OS=Staphylococcus aureus (strain MRSA252) GN=copB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 54/195 (27.69%), Postives = 100/195 (51.28%), Query Frame = 1
Query:    4 TTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            + HP+   +VD + GK++   +       PG GL  TV+         K+LK     +  ++ L KS  +  K ++  N +  G    +  +   + + +I   D+ +     ++++L     +  +MLTGD++  AQ VA  +GI++V+  L PEDK + ++    + G  ++MVG+GINDAP+L  A +G+ +
Sbjct:  412 SNHPLATGIVDFAKGKNISYATPQEVNNIPGVGLEGTVDN--------KKLK-----IVNVSYLDKSNFDYNK-EQFTNLAQQGNSISYL-IHDRQVIGIIAQGDKIKESSKQMVSDLLSR-NITPVMLTGDNKEVAQTVAEELGISDVHAQLMPEDKESIIQDYQSN-GSKIMMVGDGINDAPSLIRADIGMAI 589          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: COPA_ENTHR (Probable copper-importing P-type ATPase A OS=Enterococcus hirae GN=copA PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 56/196 (28.57%), Postives = 100/196 (51.02%), Query Frame = 1
Query:   10 HPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVT-LIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINE--VYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            HP+G+A+V +       +  I  F   PG G++ T+NG+       K L     S D      + ++++ ++++A     +        L+  E+V  +I + D+ +      I +L+    + V M+TGD++ +AQ +   VGI+   ++  + PE+K N+V+   +  G  + MVG+GINDAPAL  A VGI +
Sbjct:  459 HPLGKAIVAYGAKVGAKTQPITDFVAHPGAGISGTINGVHYFAGTRKRLAEMNLSFD------EFQEQALELEQAGKTVMF--------LANEEQVLGMIAVADQIKEDAKQAIEQLQQKG-VDVFMVTGDNQRAAQAIGKQVGIDSDHIFAEVLPEEKANYVEKLQK-AGKKVGMVGDGINDAPALRLADVGIAM 638          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: CTPV_MYCTU (Probable cation-transporting ATPase V OS=Mycobacterium tuberculosis GN=ctpV PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.390e-13
Identity = 63/203 (31.03%), Postives = 95/203 (46.80%), Query Frame = 1
Query:    1 GTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKI------KEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHAR-LRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            G+ HPIG A+V  +  + L   + + F    G G+ A VNG               G V  +    K  DE   +        AV     GR  V       + V ++ + D  +   +DV+  L  HA  L+V M+TGD+  +A  +A  VGI +V   + P+DK+  V+   +D G  + MVG+G+NDAPAL  A +GI +
Sbjct:  496 GSEHPIGAAIVAAAHERGLAIPAANAFTAVAGHGVRAQVNG---------------GPV--VVGRRKLVDEQHLVLPDHLAAAAVEQEERGRTAVFVGQD-GQVVGVLAVADTVKDDAADVVGRL--HAMGLQVAMITGDNARTAAAIAKQVGIEKVLAEVLPQDKVAEVRRL-QDQGRVVAMVGDGVNDAPALVQADLGIAI 677          
The following BLAST results are available for this feature:
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
CADA_BACSU4.779e-1430.26Cadmium, zinc and cobalt-transporting ATPase OS=Ba... [more]
CADA2_STAAU4.779e-1428.06Probable cadmium-transporting ATPase OS=Staphyloco... [more]
COPA_VIBCH6.241e-1427.46Copper-exporting P-type ATPase A OS=Vibrio cholera... [more]
COPA_HELPY6.241e-1428.93Copper-transporting ATPase OS=Helicobacter pylori ... [more]
ATKB_BACCR8.151e-1430.29Potassium-transporting ATPase B chain OS=Bacillus ... [more]
AHM3_ARATH8.151e-1429.27Putative cadmium/zinc-transporting ATPase 3 OS=Ara... [more]
COPB_STAAU1.065e-1327.69Probable copper-transporting P-type ATPase B OS=St... [more]
COPB_STAAR1.065e-1327.69Probable copper-transporting P-type ATPase B OS=St... [more]
COPA_ENTHR1.065e-1328.57Probable copper-importing P-type ATPase A OS=Enter... [more]
CTPV_MYCTU1.390e-1331.03Probable cation-transporting ATPase V OS=Mycobacte... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00179 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00179 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623088 ID=BQ623088; Name=BQ623088; organism=Citrus sinensis; type=EST; length=608bp
GGTACTACCCACCCTATTGGAAGAGCTGTGGTTGACCATAGTATAGGCAA
GGACCTTCCTTCTGTATCAATTGACCGTTTTGAGTATTTTCCTGGTCGAG
GTCTCACAGCAACTGTAAATGGCATTGAGTCAGGAACTGAAGGGGGTAAA
GAATTGAAAGCATCTCTGGGTTCTGTAGATTTTATAACTTCTCTCTGTAA
ATCTGAAGATGAATCAAGAAAGATCAAGGAAGCTGTGAATGCTTCTTCTT
ATGGAAGGGGCTTTGTTCATGCTGCTCTTTCTGTTAATGAAAAGGTAACA
TTGATTCACCTCGAGGATAGGCCTCGCCCAGGAGTTTCAGATGTTATAGC
AGAATTAAAAGATCATGCAAGATTACGTGTGATGATGTTAACTGGTGACC
ATGAGTCTAGTGCGCAGAGAGTAGCAAATGCTGTTGGCATCAATGAAGTT
TACTGCAGCCTGAAGCCTGAGGATAAGCTCAATCATGTGAAGAGTACCTC
CAGGGATATGGGAGGAGGTTTGATCATGGTTGGTGAAGGCATTAATGATG
CGCCAGCACTCGCAGCTGCAACTGTGGGAATTGTTCTTGCTCAACGGGCT
AGTGCAAC
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