BQ623088

Overview
NameBQ623088
Unique NameBQ623088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: COPA3_HELPY (Copper-transporting ATPase OS=Helicobacter pylori GN=copA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.390e-13
Identity = 56/197 (28.43%), Postives = 104/197 (52.79%), Query Frame = 1
Query:   10 HPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVTL--IHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVLAQ 594
            H I + +V+++  ++ P   +   +   G G++A     ++  +G KE+   +G+ +F   +   E +   I            FV  A+S  E   L    LED P+ GV + IA++K+   +   +L+GD+  + ++ A  +GI+    + KP+DKLN +K   ++ G  ++MVG+G+NDAP+LA   V +V+A+
Sbjct:  472 HVIAKGIVEYAKERNAPLKEMSEVKVKTGFGISA-----KTDYQGIKEI-IKVGNSEFFNPINTLEIKENGILV----------FVGRAISEKEDELLGVFVLEDLPKKGVKEHIAQIKNLG-INTFLLSGDNRENVKKCALELGIDGYISNAKPQDKLNKIKEL-KEQGQIVMMVGDGLNDAPSLAMNDVAVVMAK 650          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: ATKB_RHIME (Potassium-transporting ATPase B chain OS=Rhizobium meliloti GN=kdpB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.390e-13
Identity = 57/198 (28.79%), Postives = 99/198 (50.00%), Query Frame = 1
Query:   13 PIGRAVV---DHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDES--RKIKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLI-MVGEGINDAPALAAATVGIVL 588
            P GR++V       G+      ID    F        ++G++     G+ L+   G+VD +       D    ++ ++AV+  +   G   A    N  + ++HL+D  +PG+ +  +EL+    +R +M+TGD+  +A  +A+  G+++      PEDKL +++      GG LI M G+G NDAPALA A VG+ +
Sbjct:  347 PEGRSIVALATGEFGRGASQTGIDAVVPFTAE---TRLSGVD---HRGRRLRK--GAVDSVLRFAGLSDSKIPQEFRQAVDKVARTGGTPLAVADGNRLLGVVHLKDVVKPGIKERFSELRAMG-IRTVMVTGDNPITAAAIASEAGVDDFLAEATPEDKLAYIRKEQN--GGRLIAMCGDGTNDAPALAQADVGVAM 533          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: ATKB_BACC4 (Potassium-transporting ATPase B chain OS=Bacillus cereus (strain B4264) GN=kdpB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.390e-13
Identity = 62/207 (29.95%), Postives = 110/207 (53.14%), Query Frame = 1
Query:   13 PIGRAVVDHSIGKDLPSVSIDRF-----EYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASS---YGRGFVHAALSVNEKVT-LIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASA 606
            P GR+V+++  GK   S+S +R      E+ P +  T  ++G++   +G K  K ++G+V     +   E +   I + VN  +      G     ++V+ ++  LI+L+D  +PG+ D   +L+    ++ +M TGD+  +A  +A   G++E     KPEDK+  +K+  +D G  + M G+G NDAPALA A VG+ +    +A
Sbjct:  364 PEGRSVIEYVQGK---SISYNRELAEQGEFVPFKAETR-MSGVDL-QDGTKVRKGAVGAV-----IEWVESQGGTIPKDVNQKADLISKEGGTPLVVAVDNRIYGLIYLKDTVKPGMRDRFEQLRQMG-IKTVMCTGDNPLTAATIAKEAGVDEFVAECKPEDKIAVIKA-EQDKGKLVAMTGDGTNDAPALAQADVGLAMNSGTTA 558          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: ATCU1_RHIME (Copper-transporting ATPase 1 OS=Rhizobium meliloti GN=actP1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.390e-13
Identity = 58/193 (30.05%), Postives = 92/193 (47.67%), Query Frame = 1
Query:   10 HPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            HPI  A+V  +  + +  V    FE  PG G+   V+G+     G     + +G            D S  + EA    + G+  ++AA+       +I + D  +      I  L D   L+V M+TGD+  +A  +A  +GI+EV   + P+ K++ VK   R+ G  +  +G+GINDAPAL  A VGI +
Sbjct:  553 HPIAEAIVSAAKSRGIALVPATDFEATPGFGVRGAVSGLPVQV-GADRAFSGVGI-----------DVSPFVVEAERLGNSGKSPLYAAID-GRLAAIIAVSDPIKDTTPQAIKALHDLG-LKVAMITGDNRRTADAIARQLGIDEVVAEVLPDGKVDAVKRL-REGGRKVAFIGDGINDAPALTEADVGIAV 730          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: AHM2_ARATH (Putative cadmium/zinc-transporting ATPase 2 OS=Arabidopsis thaliana GN=HMA4 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.390e-13
Identity = 60/206 (29.13%), Postives = 103/206 (50.00%), Query Frame = 1
Query:    4 TTHPIGRAVVDH--SIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVT-LIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVG--INEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASA 606
            ++HP+   +VD+  S+  +     ++ ++ FPG G+   ++G +    G K++ +  G        C +  E     E         G+V+    V E++    +L D  R GVS  +AELK    ++  MLTGD++++A      +G  ++ V+  L PEDK   ++   ++  G   MVG+G+NDAPALA A +GI +    SA
Sbjct:  439 SSHPMAATIVDYAKSVSVEPRPEEVEDYQNFPGEGIYGKIDGNDIFI-GNKKIASRAG--------CSTVPEI----EVDTKGGKTVGYVY----VGERLAGFFNLSDACRSGVSQAMAELKSLG-IKTAMLTGDNQAAAMHAQEQLGNVLDVVHGDLLPEDKSRIIQEFKKE--GPTAMVGDGVNDAPALATADIGISMGISGSA 624          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: SILP_SALTY (Putative cation-transporting P-type ATPase OS=Salmonella typhimurium GN=silP PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.816e-13
Identity = 58/196 (29.59%), Postives = 95/196 (48.47%), Query Frame = 1
Query:    1 GTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            G+ HP+G AVV  +  K +   ++  F    G+G++  V G       G EL     S+          D  + + + +     G   ++ A        LI + D  +    D +  L+  A +R++MLTGD++ +A+ VA  +GI+EV   + P+ K   V +  +  G  + M G+G+NDAPALAAA VGI +
Sbjct:  547 GSQHPLGMAVVKAAQEKGIAIPAVTHFNAPSGKGVSGDVEG--QRVVIGNELAMQENSIVI--------DNQKAVADTLRME--GTTVIYVATD-GHLAGLIAISDPVKATTPDALKALRQ-AGIRIVMLTGDNQLTAEAVARKLGIDEVEAGILPDGK-KAVITRLKASGHVVAMAGDGVNDAPALAAADVGIAM 727          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: COPA_STAHJ (Copper-exporting P-type ATPase A OS=Staphylococcus haemolyticus (strain JCSC1435) GN=copA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 50/193 (25.91%), Postives = 90/193 (46.63%), Query Frame = 1
Query:   10 HPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            HP+  A+V+++    +  V++  ++  PG G+ A ++         K +     ++  I    K  +        +      RG +  A             D  +    + I +L     +R +MLTGD+E +A+ +A  VGI++V   + PEDK +H+ +  ++    + MVG+GINDAPAL  A +GI +
Sbjct:  530 HPLATAIVNYAKQHKVNLVNVTNYQTLPGHGIQAIIDDSMLFVGNQKLMLDHQINIQSIKQKMKQMEAEGHTVMLIAYDGKLRGMIAVA-------------DTVKASAKEAIQQLSS-MNIRTVMLTGDNERTAKAIAKEVGIDQVIAGVLPEDKAHHI-TQLQEQKHNVAMVGDGINDAPALVKADIGIAM 707          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: COPA1_HELPY (Copper-transporting ATPase OS=Helicobacter pylori GN=copA PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 55/199 (27.64%), Postives = 106/199 (53.27%), Query Frame = 1
Query:   10 HPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEK----VTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVLAQ 594
            H I + +V+++   + P   +   +   G G++A     ++  +G KE+   +G+ +F   +   E +   I   V     GR       ++NEK    +    LED P+ GV + +A++K+   +   +L+GD+  + ++ A  +GI+    + KP+DKLN +K   ++ G  ++MVG+G+NDAP+LA + V +V+A+
Sbjct:  472 HVIAKGIVEYAKEHNAPLKEMSEVKVKTGFGISA-----KTDYQGTKEI-IKVGNSEFFNPINTLEIQENGILVLV-----GR-------AINEKEDELLGAFVLEDLPKKGVKEHVAQIKNLG-INTFLLSGDNRENVKKCALELGIDGYISNAKPQDKLNKIKEL-KEKGRIVMMVGDGLNDAPSLAMSDVAVVMAK 650          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: ATKB_BACC0 (Potassium-transporting ATPase B chain OS=Bacillus cereus (strain AH820) GN=kdpB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 58/202 (28.71%), Postives = 103/202 (50.99%), Query Frame = 1
Query:   13 PIGRAVVDHSIGKDLP--SVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDES--RKIKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASA 606
            P GR+V++H   K +       ++ E+ P +  T  ++G++   +G K  K ++GSV       KS+  +  + + +  +  S   G        N    LI+L+D  +PG+ +   +L+    ++ +M TGD+  +A  +A   G++E     KPEDK+  +K+  +D G  + M G+G NDAPALA A VG+ +    +A
Sbjct:  364 PEGRSVIEHVQAKSISYNKELAEQGEFIPFKAETR-MSGVDL-QDGTKVRKGAVGSV---IEWVKSQGGTIPKDVNQKADFISKEGGTPLVVAVDNRIYGLIYLKDTVKPGMRERFEQLRQMG-IKTVMCTGDNPLTAATIAKEAGVDEFVAECKPEDKIAVIKA-EQDKGKLVAMTGDGTNDAPALAQADVGLAMNSGTTA 558          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: COPA2_HELPY (Copper-transporting ATPase OS=Helicobacter pylori GN=copA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.098e-13
Identity = 55/197 (27.92%), Postives = 102/197 (51.78%), Query Frame = 1
Query:   10 HPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVTL--IHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVLAQ 594
            H I + +V+++   + P   +   +   G G++A     ++  +G KE+   +G+ +F   +   E +   I            FV   +S  E   L    LED P+ GV + IA++K    +   +L+GD+  + ++ A  +GI+    + KP+DKLN +K   ++ G  ++MVG+G+NDAP+LA + V +V+A+
Sbjct:  468 HVIAKGIVEYAKEHNAPLKEMSEVKVKTGFGISA-----KTDYQGAKEV-IKVGNSEFFNPINALEIQENGILV----------FVGRVISEKEDELLGAFVLEDLPKKGVKEHIAQIKKLG-INTFLLSGDNRENVKKCALELGIDGYISNAKPQDKLNKIKEL-KEKGQIVMMVGDGLNDAPSLAMSDVAVVMAK 646          
The following BLAST results are available for this feature:
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
COPA3_HELPY1.390e-1328.43Copper-transporting ATPase OS=Helicobacter pylori ... [more]
ATKB_RHIME1.390e-1328.79Potassium-transporting ATPase B chain OS=Rhizobium... [more]
ATKB_BACC41.390e-1329.95Potassium-transporting ATPase B chain OS=Bacillus ... [more]
ATCU1_RHIME1.390e-1330.05Copper-transporting ATPase 1 OS=Rhizobium meliloti... [more]
AHM2_ARATH1.390e-1329.13Putative cadmium/zinc-transporting ATPase 2 OS=Ara... [more]
SILP_SALTY1.816e-1329.59Putative cation-transporting P-type ATPase OS=Salm... [more]
COPA_STAHJ2.372e-1325.91Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA1_HELPY2.372e-1327.64Copper-transporting ATPase OS=Helicobacter pylori ... [more]
ATKB_BACC02.372e-1328.71Potassium-transporting ATPase B chain OS=Bacillus ... [more]
COPA2_HELPY3.098e-1327.92Copper-transporting ATPase OS=Helicobacter pylori ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00179 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00179 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623088 ID=BQ623088; Name=BQ623088; organism=Citrus sinensis; type=EST; length=608bp
GGTACTACCCACCCTATTGGAAGAGCTGTGGTTGACCATAGTATAGGCAA
GGACCTTCCTTCTGTATCAATTGACCGTTTTGAGTATTTTCCTGGTCGAG
GTCTCACAGCAACTGTAAATGGCATTGAGTCAGGAACTGAAGGGGGTAAA
GAATTGAAAGCATCTCTGGGTTCTGTAGATTTTATAACTTCTCTCTGTAA
ATCTGAAGATGAATCAAGAAAGATCAAGGAAGCTGTGAATGCTTCTTCTT
ATGGAAGGGGCTTTGTTCATGCTGCTCTTTCTGTTAATGAAAAGGTAACA
TTGATTCACCTCGAGGATAGGCCTCGCCCAGGAGTTTCAGATGTTATAGC
AGAATTAAAAGATCATGCAAGATTACGTGTGATGATGTTAACTGGTGACC
ATGAGTCTAGTGCGCAGAGAGTAGCAAATGCTGTTGGCATCAATGAAGTT
TACTGCAGCCTGAAGCCTGAGGATAAGCTCAATCATGTGAAGAGTACCTC
CAGGGATATGGGAGGAGGTTTGATCATGGTTGGTGAAGGCATTAATGATG
CGCCAGCACTCGCAGCTGCAACTGTGGGAATTGTTCTTGCTCAACGGGCT
AGTGCAAC
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