BQ623088

Overview
NameBQ623088
Unique NameBQ623088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: COPB_STAA3 (Probable copper-transporting P-type ATPase B OS=Staphylococcus aureus (strain USA300) GN=copB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.008e-12
Identity = 54/195 (27.69%), Postives = 93/195 (47.69%), Query Frame = 1
Query:    4 TTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            + HP+  ++VD +  K++   +       PG GL   ++         K  K +  S      L   +D   K+ +  N+ SY        +   + + +I   D+ +     ++A+L     +  +MLTGD+   A  VA  +GI++V+  L PEDK + +K    D G  ++MVG+GINDAP+L  A +GI +
Sbjct:  405 SNHPLAISIVDFAKSKNVSFTNPQDVNNIPGVGLEGLIDN--------KTYKITNVSYLDKHKLNYDDDLFTKLAQQGNSISY-------LIEDQQVIGMIAQGDQIKESSKQMVADLLSR-NITPVMLTGDNNEVAHAVAKELGISDVHAQLMPEDKESIIKDYQSD-GNKVMMVGDGINDAPSLIRADIGIAI 582          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: ATKB_BACC3 (Potassium-transporting ATPase B chain OS=Bacillus cereus (strain 03BB102) GN=kdpB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.622e-12
Identity = 61/208 (29.33%), Postives = 111/208 (53.37%), Query Frame = 1
Query:   13 PIGRAVVDHSIGKDLPSVSIDRF-----EYFPGRGLTATVNGIESGTEGGKELKASLGSV-DFITSLCKSEDESRKIKEAVNASS---YGRGFVHAALSVNEKVT-LIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASA 606
            P GR+V+++   K   S+S +R      E+ P +  T  ++G++   +G K  K ++GSV +++ S      +   I + VN  +      G     ++V+ ++  LI+L+D  +PG+ +   +L+    ++ +M TGD+  +A  +A   G++E     KPEDK+  +K+  +D G  + M G+G NDAPALA A VG+ +    +A
Sbjct:  359 PEGRSVIEYVKTK---SISYNREIAEQGEFVPFKAETR-MSGVDL-QDGTKVRKGAVGSVIEWVRS------QGGTIPKDVNQKADFISKEGGTPLVVAVDNRIYGLIYLKDTVKPGMRERFEQLRQMG-IKTVMCTGDNPLTAATIAKEAGVDEFVAECKPEDKIAVIKA-EQDKGKLVAMTGDGTNDAPALAQADVGLAMNSGTTA 553          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: AHM6_ARATH (Putative copper-transporting ATPase PAA1 OS=Arabidopsis thaliana GN=PAA1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.622e-12
Identity = 58/206 (28.16%), Postives = 102/206 (49.51%), Query Frame = 1
Query:    4 TTHPIGRAVVDHSIGKDLPSVSID--RFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKE-AVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINE--VYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASA 606
            TTHP+G+A+V  +  ++  ++  +   F   PG G  A VN            + ++G+++++     + +    ++E  +N  S     V+  +  N    +I  ED+ R   + V+  L     + V ML+GD  ++A  VA+ VGIN   V   +KP +K N +    ++    + MVG+GINDA ALA++ VG+ +   A A
Sbjct:  643 TTHPVGKAIVKAARARNCQTMKAEDGTFTEEPGSGAVAIVNN----------KRVTVGTLEWVKRHGATGNSLLALEEHEINNQSV----VYIGVD-NTLAAVIRFEDKVREDAAQVVENLTRQG-IDVYMLSGDKRNAANYVASVVGINHERVIAGVKPAEKKNFINELQKNKKI-VAMVGDGINDAAALASSNVGVAMGGGAGA 831          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: COPB_STAHJ (Probable copper-transporting P-type ATPase B OS=Staphylococcus haemolyticus (strain JCSC1435) GN=copB PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.473e-12
Identity = 53/195 (27.18%), Postives = 94/195 (48.21%), Query Frame = 1
Query:    4 TTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            + HP+  ++VD +  K++   +       PG GL   ++         K  K +  +V ++       D    IK A   +S     +   +   + + +I   D+ +     ++A+L     +  +MLTGD++  A  VA  +GI++V+  L PEDK + +K    D G  ++MVG+GINDAP+L  A +GI +
Sbjct:  405 SNHPLAISIVDFTKSKNVSFTNPQDVNNIPGVGLEGLIDN--------KTYKIT--NVSYLDQHGFEYDNDLFIKLAQQGNS-----ISYLIEDQQVIGMIAQGDQIKESSKQMVADLLSR-HITPVMLTGDNDEVAHAVAKELGISDVHAQLMPEDKESIIKDYQSD-GNKVMMVGDGINDAPSLIRADIGIAI 582          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: COPA_SALTY (Copper-exporting P-type ATPase A OS=Salmonella typhimurium GN=copA PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 4.473e-12
Identity = 63/199 (31.66%), Postives = 101/199 (50.75%), Query Frame = 1
Query:    1 GTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVT-LIHLEDRPRPGVSDVIAELK--DHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            G++HP+  A+++ +    LP V+  R      RGL     G+    EG + L   LG+   +     + D+      A   +   +G     L+++ K   L+ + D  R   SD IA L+   +A  R++MLTGD+ ++A  +A   GI+EV   + P+ K + +K   +  G  + MVG+GINDAPALA A VGI +
Sbjct:  558 GSSHPLAHAILEKAGDDKLPQVNGFRTL----RGL-----GVSGEAEGHQLL---LGNQALLNEQHVATDDMT----AEITAQASQGSTPVLLAIDGKAAALLAVRDPLR---SDSIAALERLHNAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGVLPDGKADAIKRL-QSQGRQVAMVGDGINDAPALAQADVGIAM 736          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: COPA_SALTI (Copper-exporting P-type ATPase A OS=Salmonella typhi GN=copA PE=3 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 4.473e-12
Identity = 63/199 (31.66%), Postives = 101/199 (50.75%), Query Frame = 1
Query:    1 GTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVT-LIHLEDRPRPGVSDVIAELK--DHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            G++HP+  A+++ +    LP V+  R      RGL     G+    EG + L   LG+   +     + D+      A   +   +G     L+++ K   L+ + D  R   SD IA L+   +A  R++MLTGD+ ++A  +A   GI+EV   + P+ K + +K   +  G  + MVG+GINDAPALA A VGI +
Sbjct:  558 GSSHPLAHAILEKAGDDKLPQVNGFRTL----RGL-----GVSGEAEGHQLL---LGNQALLNEQHVATDDMT----AEITAQASQGSTPVLLAIDGKAAALLAVRDPLR---SDSIAALERLHNAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGVLPDGKADAIKRL-QSQGRQVAMVGDGINDAPALAQADVGIAM 736          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: ATKB_THETN (Potassium-transporting ATPase B chain OS=Thermoanaerobacter tengcongensis GN=kdpB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.473e-12
Identity = 37/101 (36.63%), Postives = 63/101 (62.38%), Query Frame = 1
Query:  286 NEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            NE + +I+L+D  +PG+ +   +L+    ++ +M+TGD+  +A+ +A   G++E     KPEDK+N +K   +  G  + M G+G NDAPALA A VG+ +
Sbjct:  436 NEVLGVIYLKDTIKPGMKERFKQLRAMG-IKTIMITGDNPLTAKTIAEEAGVDEFIAESKPEDKINVIK-REQAQGRLVAMTGDGTNDAPALAQADVGLAM 534          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: ATKB_BACWK (Potassium-transporting ATPase B chain OS=Bacillus weihenstephanensis (strain KBAB4) GN=kdpB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.842e-12
Identity = 60/208 (28.85%), Postives = 111/208 (53.37%), Query Frame = 1
Query:   13 PIGRAVVDHSIGKDLPSVSIDRF-----EYFPGRGLTATVNGIESGTEGGKELKASLGSV-DFITSLCKSEDESRKIKEAVNASS---YGRGFVHAALSVNEKVT-LIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASA 606
            P GR+V+++   K   S+S +R      E+ P +  T  ++G++   +G K  K ++G+V +++ S      +   I + VN  +      G     ++V+ ++  LI+L+D  +PG+ +   +L+    ++ +M TGD+  +A  +A   G++E     KPEDK+  +K+  +D G  + M G+G NDAPALA A VG+ +    +A
Sbjct:  364 PEGRSVIEYVQTK---SISYNREIAEQGEFVPFKAETR-MSGVDL-QDGTKVRKGAVGAVIEWVQS------QGGMIPKDVNQKADLISKEGGTPLVVAVDNRIYGLIYLKDTVKPGMRERFEQLRQMG-IKTVMCTGDNPLTAATIAKEAGVDEFVAECKPEDKIAVIKA-EQDKGKLVAMTGDGTNDAPALAQADVGLAMNSGTTA 558          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: COPB_STAES (Probable copper-transporting P-type ATPase B OS=Staphylococcus epidermidis (strain ATCC 12228) GN=copB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.630e-12
Identity = 53/195 (27.18%), Postives = 93/195 (47.69%), Query Frame = 1
Query:    4 TTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            + HP+  ++VD +  K++   +       PG GL   ++         K  K +  S      L   +D   K+ +  N+ SY        +   + + +I   D+ +     ++A+L     +  +MLTGD+   A  VA  +GI++V+  L PEDK + +K    + G  ++MVG+GINDAP+L  A +GI +
Sbjct:  405 SNHPLAISIVDFAKSKNVSFTNPQDVNNIPGVGLEGLIDN--------KTYKITNVSYLDKHKLNYDDDLFTKLAQQGNSISY-------LIEDQQVIGMIAQGDQIKESSKQMVADLLSR-NITPVMLTGDNNEVAHAVAKELGISDVHAQLMPEDKESIIKDYQSN-GNKVMMVGDGINDAPSLIRADIGIAI 582          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: ATKB2_LISIN (Potassium-transporting ATPase B chain 2 OS=Listeria innocua GN=kdpB2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 53/200 (26.50%), Postives = 96/200 (48.00%), Query Frame = 1
Query:   13 PIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKS--EDESRKIKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASA 606
            P G+++V  ++GKDL    +D  +    + +  T     SG +     +   G+ D I    K+   +    +++ VN  S   G      +  +   +I+L+D  +PG+ +    L+    ++ +M TGD+  +A  +A+  G++      KPEDK+  +K  ++     + M G+G NDAPALA A VGI +    +A
Sbjct:  346 PEGKSIV--TLGKDLLKEDLDTNDIRENQFIEFTAQTRMSGVDLADGTRIRKGAYDAIIKYIKNIGGEIPHDLEDKVNNISKLGGTPLVVCAEEKIYGVIYLKDTIKPGLVERFERLRSIG-IKTIMCTGDNPLTAATIAHEAGVDSFIAECKPEDKIKVIKD-AQSKSKVVAMTGDGTNDAPALAQADVGIAMNSGTTA 541          
The following BLAST results are available for this feature:
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
COPB_STAA32.008e-1227.69Probable copper-transporting P-type ATPase B OS=St... [more]
ATKB_BACC32.622e-1229.33Potassium-transporting ATPase B chain OS=Bacillus ... [more]
AHM6_ARATH2.622e-1228.16Putative copper-transporting ATPase PAA1 OS=Arabid... [more]
COPB_STAHJ4.473e-1227.18Probable copper-transporting P-type ATPase B OS=St... [more]
COPA_SALTY4.473e-1231.66Copper-exporting P-type ATPase A OS=Salmonella typ... [more]
COPA_SALTI4.473e-1231.66Copper-exporting P-type ATPase A OS=Salmonella typ... [more]
ATKB_THETN4.473e-1236.63Potassium-transporting ATPase B chain OS=Thermoana... [more]
ATKB_BACWK5.842e-1228.85Potassium-transporting ATPase B chain OS=Bacillus ... [more]
COPB_STAES7.630e-1227.18Probable copper-transporting P-type ATPase B OS=St... [more]
ATKB2_LISIN9.965e-1226.50Potassium-transporting ATPase B chain 2 OS=Listeri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00179 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00179 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623088 ID=BQ623088; Name=BQ623088; organism=Citrus sinensis; type=EST; length=608bp
GGTACTACCCACCCTATTGGAAGAGCTGTGGTTGACCATAGTATAGGCAA
GGACCTTCCTTCTGTATCAATTGACCGTTTTGAGTATTTTCCTGGTCGAG
GTCTCACAGCAACTGTAAATGGCATTGAGTCAGGAACTGAAGGGGGTAAA
GAATTGAAAGCATCTCTGGGTTCTGTAGATTTTATAACTTCTCTCTGTAA
ATCTGAAGATGAATCAAGAAAGATCAAGGAAGCTGTGAATGCTTCTTCTT
ATGGAAGGGGCTTTGTTCATGCTGCTCTTTCTGTTAATGAAAAGGTAACA
TTGATTCACCTCGAGGATAGGCCTCGCCCAGGAGTTTCAGATGTTATAGC
AGAATTAAAAGATCATGCAAGATTACGTGTGATGATGTTAACTGGTGACC
ATGAGTCTAGTGCGCAGAGAGTAGCAAATGCTGTTGGCATCAATGAAGTT
TACTGCAGCCTGAAGCCTGAGGATAAGCTCAATCATGTGAAGAGTACCTC
CAGGGATATGGGAGGAGGTTTGATCATGGTTGGTGAAGGCATTAATGATG
CGCCAGCACTCGCAGCTGCAACTGTGGGAATTGTTCTTGCTCAACGGGCT
AGTGCAAC
back to top