BQ623092

Overview
NameBQ623092
Unique NameBQ623092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11919 contig Csv1_Contig11919:551..1184. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623092 vs. ExPASy Swiss-Prot
Match: S35E1_DROME (Solute carrier family 35 member E1 homolog OS=Drosophila melanogaster GN=CG14621 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.077e-19
Identity = 46/140 (32.86%), Postives = 88/140 (62.86%), Query Frame = 1
Query:   43 KLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAM--TDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKH 456
            +L++P+A+   L  VTS++S   V VS+ HT+KA  P F    ++   G++ P  ++LSL P++ GV +A++TE+SF+  G ISA+IS + F+ ++I+SKK +  T++    +   +  ++LF+ +P  + ++   + +H
Sbjct:   79 RLIVPLALGKLLASVTSHISLWKVPVSYAHTVKATMPLFTVVLTRVFFGEKQPTLVYLSLLPIITGVGIATVTEISFDMMGLISALISTMGFSMQNIFSKKVLKDTNIHHLRLLHLLGKLSLFIFLPLWLYMDSFAVFRH 218          
BLAST of BQ623092 vs. ExPASy Swiss-Prot
Match: S35E1_RAT (Solute carrier family 35 member E1 OS=Rattus norvegicus GN=Slc35e1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.236e-17
Identity = 41/133 (30.83%), Postives = 79/133 (59.40%), Query Frame = 1
Query:   43 KLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTD--MDSTNIYAYISIIALFVCIPPAIIVE 435
            + ++P+A       V+++VS   V VS+ HT+KA  P +    S+ I+ ++    ++LSL P++ GV +A++TELSF+  G +SA+ + + F+ ++I+SKK + D  +    +   +   A+F  IP  ++V+
Sbjct:  110 RYVLPLAFGKYFASVSAHVSIWKVPVSYAHTVKATMPIWVVLLSRIIMKEKQSTKVYLSLVPIISGVLLATVTELSFDVWGLVSALAATLCFSLQNIFSKKVLRDSRIHHLRLLNILGCHAVFFMIPTWVLVD 242          

HSP 2 Score: 29.261 bits (64), Expect = 3.236e-17
Identity = 16/52 (30.77%), Postives = 26/52 (50.00%), Query Frame = 2
Query:  479 KWAWASSFQIFFGWGMFYHLYNQLATNTLERGAPLTHAVGNGLKRVFVIGFS 634
            +W W     +  G+  F    N +A + L   +PL+++V N  KR+ VI  S
Sbjct:  257 QWPWTLLLLVVSGFCNFAQ--NVIAFSILNLISPLSYSVANATKRIMVIAVS 306          
BLAST of BQ623092 vs. ExPASy Swiss-Prot
Match: S35E1_HUMAN (Solute carrier family 35 member E1 OS=Homo sapiens GN=SLC35E1 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 9.240e-17
Identity = 41/133 (30.83%), Postives = 79/133 (59.40%), Query Frame = 1
Query:   43 KLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTD--MDSTNIYAYISIIALFVCIPPAIIVE 435
            + ++P+A       V+++VS   V VS+ HT+KA  P +    S+ I+ ++    ++LSL P++ GV +A++TELSF+  G +SA+ + + F+ ++I+SKK + D  +    +   +   A+F  IP  ++V+
Sbjct:  110 RYVLPLAFGKYFASVSAHVSIWKVPVSYAHTVKATMPIWVVLLSRIIMKEKQSTKVYLSLIPIISGVLLATVTELSFDMWGLVSALAATLCFSLQNIFSKKVLRDSRIHHLRLLNILGCHAVFFMIPTWVLVD 242          

HSP 2 Score: 27.335 bits (59), Expect = 9.240e-17
Identity = 16/52 (30.77%), Postives = 25/52 (48.08%), Query Frame = 2
Query:  479 KWAWASSFQIFFGWGMFYHLYNQLATNTLERGAPLTHAVGNGLKRVFVIGFS 634
            +W W        G+  F    N +A + L   +PL+++V N  KR+ VI  S
Sbjct:  257 QWPWTLLLLAVSGFCNFAQ--NVIAFSILNLVSPLSYSVANATKRIMVITVS 306          
BLAST of BQ623092 vs. ExPASy Swiss-Prot
Match: S35E1_MOUSE (Solute carrier family 35 member E1 OS=Mus musculus GN=Slc35e1 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.562e-16
Identity = 41/133 (30.83%), Postives = 79/133 (59.40%), Query Frame = 1
Query:   43 KLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTD--MDSTNIYAYISIIALFVCIPPAIIVE 435
            + ++P+A       V+++VS   V VS+ HT+KA  P +    S+ I+ ++    ++LSL P++ GV +A++TELSF+  G +SA+ + + F+ ++I+SKK + D  +    +   +   A+F  IP  ++V+
Sbjct:  110 RYVLPLAFGKYFASVSAHVSIWKVPVSYAHTVKATMPIWVVLLSRIIMKEKQSTKVYLSLVPIISGVLLATVTELSFDVWGLVSALAATLCFSLQNIFSKKVLRDSRIHHLRLLNILGCHAVFFMIPTWVLVD 242          

HSP 2 Score: 26.9498 bits (58), Expect = 1.562e-16
Identity = 16/52 (30.77%), Postives = 25/52 (48.08%), Query Frame = 2
Query:  479 KWAWASSFQIFFGWGMFYHLYNQLATNTLERGAPLTHAVGNGLKRVFVIGFS 634
            +W W        G+  F    N +A + L   +PL+++V N  KR+ VI  S
Sbjct:  257 QWPWTLLLLAVSGFCNFAQ--NVIAFSILNLISPLSYSVANATKRIMVITVS 306          
BLAST of BQ623092 vs. ExPASy Swiss-Prot
Match: YG1B_SCHPO (Putative transporter C83.11 OS=Schizosaccharomyces pombe GN=SPBC83.11 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.816e-13
Identity = 42/145 (28.97%), Postives = 68/145 (46.90%), Query Frame = 1
Query:   37 LLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDS-----------TNIYAYISIIALFVCIPPAIIVEG 438
            +L   +P+++    GHV  +++   + VS  HT+KAL P F   A +F+         + SL P+  GV++A   ELS +  G + A+IS   F  ++I+  K   +  S            N+  Y S +A  V IP  +  EG
Sbjct:   69 VLYTTLPLSIFQIGGHVFGSLATTKIPVSTVHTVKALSPLFTVLAYRFMFRHVYSAMTYFSLVPLTFGVTLACSFELSADIVGLLYALISTCIFVSQNIFGSKIFMEAKSHSTHTKKHYNKLNLLLYSSGVAFIVMIPVWLYQEG 213          

HSP 2 Score: 24.6386 bits (52), Expect = 8.816e-13
Identity = 11/35 (31.43%), Postives = 21/35 (60.00%), Query Frame = 2
Query:  521 GMFYHLYNQLATNTLERGAPLTHAVGNGLKRVFVI 625
            G+ +   N LA   L   +P+ +++ + +KR+FVI
Sbjct:  232 GLSHFFQNILAFTLLSIISPVAYSIASLIKRIFVI 266          
BLAST of BQ623092 vs. ExPASy Swiss-Prot
Match: S35E2_HUMAN (Solute carrier family 35 member E2 OS=Homo sapiens GN=SLC35E2 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.262e-12
Identity = 39/114 (34.21%), Postives = 65/114 (57.02%), Query Frame = 1
Query:   97 VSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTD----MDSTNIYAYISIIALFVCIPPAI 426
            VS   VAVSF  T+K+  P F    S+ ILG+   L + LSL PV+ G+++ + TE+SFN  GF +A+ +NI    ++++SKK ++       +  +  Y S  A+ + +P  +
Sbjct:  162 VSLKNVAVSFAETVKSSAPIFTVIMSRMILGEYTGLLVNLSLIPVMGGLALCTATEISFNVLGFSAALSTNIMDCLQNVFSKKLLSGDKYRFSAPELQFYTSAAAVAMLVPARV 275          

HSP 2 Score: 21.1718 bits (43), Expect = 3.262e-12
Identity = 10/38 (26.32%), Postives = 20/38 (52.63%), Query Frame = 2
Query:  521 GMFYHLYNQLATNTLERGAPLTHAVGNGLKRVFVIGFS 634
            G+ +HL +  A   + + +P+T +V + +K    I  S
Sbjct:  304 GVLFHLQSVTAYALMGKISPVTFSVASTVKHALSIWLS 341          
BLAST of BQ623092 vs. ExPASy Swiss-Prot
Match: S35E2_MOUSE (Solute carrier family 35 member E2 OS=Mus musculus GN=Slc35e2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.500e-12
Identity = 40/111 (36.04%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   97 VSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTD----MDSTNIYAYISIIALFVCIP 417
            VS   VAVSF  T+K+  P F    S+ ILG+   L + LSL PV+ G+++ + TE+SFN  GF +A+ +NI    ++++SKK ++       +  +  Y S  A+ + IP
Sbjct:  162 VSLKNVAVSFAETVKSSAPIFTVIMSRMILGEYTGLLVNLSLIPVMGGLALCTATEISFNILGFSAALSTNIMDCLQNVFSKKLLSGDKYRFSAPELQFYTSAAAVALLIP 272          

HSP 2 Score: 20.4014 bits (41), Expect = 5.500e-12
Identity = 10/38 (26.32%), Postives = 19/38 (50.00%), Query Frame = 2
Query:  521 GMFYHLYNQLATNTLERGAPLTHAVGNGLKRVFVIGFS 634
            G  +HL +  A   + + +P+T +V + +K    I  S
Sbjct:  304 GALFHLQSVTAYALMGKISPVTFSVASTVKHALSIWLS 341          
The following BLAST results are available for this feature:
BLAST of BQ623092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
S35E1_DROME1.077e-1932.86Solute carrier family 35 member E1 homolog OS=Dros... [more]
S35E1_RAT3.236e-1730.83Solute carrier family 35 member E1 OS=Rattus norve... [more]
S35E1_HUMAN9.240e-1730.83Solute carrier family 35 member E1 OS=Homo sapiens... [more]
S35E1_MOUSE1.562e-1630.83Solute carrier family 35 member E1 OS=Mus musculus... [more]
YG1B_SCHPO8.816e-1328.97Putative transporter C83.11 OS=Schizosaccharomyces... [more]
S35E2_HUMAN3.262e-1234.21Solute carrier family 35 member E2 OS=Homo sapiens... [more]
S35E2_MOUSE5.500e-1236.04Solute carrier family 35 member E2 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00183 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00183 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623092 ID=BQ623092; Name=BQ623092; organism=Citrus sinensis; type=EST; length=635bp
GTGGGCCTTCCCAAGCGAGCTCCTATTGATTCAAAACTCCTGAAGCTCTT
AATCCCTGTTGCTGTGTGTCATGCATTGGGCCATGTTACCAGCAACGTGT
CTTTTGCAGCAGTTGCTGTCTCCTTTACCCATACCATCAAAGCTCTTGAG
CCCTTCTTCAACGCTGCTGCTTCACAATTCATTCTAGGCCAACAGTTACC
TCTGACTCTGTGGCTGTCTCTTGCTCCTGTGGTTATTGGAGTGTCAATGG
CATCATTGACTGAGCTGTCGTTCAATTGGACGGGCTTCATTAGTGCTATG
ATTTCCAACATATCGTTTACTTACAGGAGTATCTACTCCAAGAAAGCCAT
GACTGATATGGACAGTACTAATATTTATGCCTATATTTCCATCATTGCGC
TCTTTGTCTGTATTCCACCAGCCATCATTGTTGAGGGACCTCAACTGATT
AAGCATGGCTTAAGTGATGCAATTTCCAAAGTGGGCATGGGCAAGTTCAT
TTCAGATCTTTTTTGGGTGGGGGATGTTTTACCACCTCTACAATCAGTTG
GCTACCAACACCTTGGAGAGGGGTGCACCTCTTACTCATGCAGTTGGCAA
TGGACTGAAACGTGTGTTTGTGATTGGGTTCTCAA
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